NO11G03540, NO11G03540 (gene) Nannochloropsis oceanica

Overview
NameNO11G03540
Unique NameNO11G03540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1915
Alignment locationchr11:1138408..1140322 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1138408..1140322 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO11G03540 vs. NCBI_GenBank
Match: EWM24830.1 (hypothetical protein Naga_100234g2 [Nannochloropsis gaditana])

HSP 1 Score: 69.3 bits (168), Expect = 3.700e-8
Identity = 84/220 (38.18%), Postives = 101/220 (45.91%), Query Frame = 0 
Query:  169 AAPNAKKSEDE--VSES-----EEDWTTAIEKAVVEVIEQEEKEAAAGWTGLRGSKRVYDGSYEEGEGVGGSPFFFLP----SLFSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNGFAVMNDLVNNILSSLPSPSSLPALPFGVPTPPEGSRVIVETTHDGSTGKTTETFYVVDSESGEKKMVGEEVEDDEEDGGRASVFGEGQGIMKSIVSYVV 378
            +AP+ K   D+  VSE+     EE+W  A+   V +VIE+EEKEA AGW GLRGS R    SY++ +    S FF LP    SLF P                    XXXXXXXXXXX                                           T  D  TGKTTE+FYVVD+ESGE++ VGE V   EE  G  +  G   G MKS+ SYVV
Sbjct:  312 SAPDVKADGDQLPVSEAPEDAKEEEWLDALASTVEDVIEEEEKEANAGWQGLRGSHR----SYDDTDDQDSSLFFPLPGLLSSLFPPAAPGSMDMEDGTEPTLVVLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLRD-ETGKTTESFYVVDAESGEREKVGETVAPAEEASGTETPEG---GFMKSVYSYVV 523
The following BLAST results are available for this feature:
BLAST of NO11G03540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24830.13.700e-838.18hypothetical protein Naga_100234g2 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL111nonsL111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR080ncniR080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G03540.1NO11G03540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|634687gene_11269Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100234g2gene5651Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G03540.1NO11G03540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G03540 ID=NO11G03540|Name=NO11G03540|organism=Nannochloropsis oceanica|type=gene|length=1915bp
GTTTCTCTGGGGGGCTGGATCCTTTGTCCCTGCCATATGGGATGGCTTGG
GCCGTCTTTCAACCCCATACGTTGTGCACGGCCATATCCTGTCCGATTTT
TTGTAATCTAAGTCACTTATTGCTTGCTCATTGCTCATGCGTGCACCCTG
TCCTCCATCTAATATGTCCGCTAAAGCGTTCTCGAAACAAAACACGATCT
GCCCGCCGGACTCAATCTTTCTTCTATTTTCCACGCACCTCGTACATATA
TACTATTTCAGACTTGGCCAGTACAATAAAAAAAGATGAAGCTTTACAGC
AAGCGCACGCTGACACTGGTGCTGCTTGCCCTCCTATGCGTGGCGCTCGC
CGTGAGGGCGCAGGACGTGCAGCAGGAGCAGGAGCACCAGCAGGAGGACG
GAGCAGAGGCCGCACAAGCGCTGGAGGCGTCGATTACCGACCACGAGCAG
CAGCACATGGTAGACCAGCGAGCTACTGAACAGGAGgtgagtgagtggga
agagcgggaaggaagtgcgacgggagatttcaggactatgcgtgtgtttc
tgcttccggcgatctgatttcttttcctttccgtttgtgccatcgcacag
GTGGCGGAGGAAGAACCAGCTACAGCCACGATGCAGGAGGAGATGAAAAA
GGAAGAGAAGGAACCCGTTGCAGCTGTGGAAAATGCGAAGGATGAAGAAA
AGAAGGAGGAAGAATATGTCCCTACCCAGCCGGAGGTCCAAAAGGAAAAG
GAAGAACCCGTGGAAACTAAGGTGGTGAAGGAGGAAGATTCGGTGCCCGT
GGCTACGGAAGAAGAGAAGATCAACGTGGCGGTCAACCATGGAACATATC
CTGCTGATCCTATCGAGCTCCCTGTGGCCGGTACGGAAACCGAGGGCGAG
ACTGCCGCGCCTAATGCTAAGAAGTCTGAGGATGAAGTGTCCGAGAGTGA
AGAGGATTGGACCACAGCCATCGAAAAGGCCGTTGTGGAAGTAATCGAGC
AGGAAGAAAAGGAGGCAGCAGCGGGGTGGACGGGCTTGCGCGGGTCGAAA
CGTGTATACGATGGCAGCTACGAGGAGGGAGAGGGAGTGGGAGGATCGCC
CTTCTTCTTCCTCCCCAGCCTCTTCTCTCCCTTCTTTTCCTCCTCCGCCG
CACCTTTAATGGTTGAGGATGAAAATGGCAATGGTGCTCTCCTCGTTCCT
CCTCGTTCCTCCTCCTCCTCCTTCTCCAATGGCTTCGCCGTCATGAACGA
CCTGGTCAATAACATCCTTTCTTCGCTCCCCAGCCCTTCCTCCCTCCCTG
CCCTCCCCTTTGGGGTGCCAACCCCTCCAGAAGGCTCAAGGGTGATTGTG
GAGACCACACACGATGGCTCAACGGGCAAGACGACAGAAACCTTTTACGT
GGTGGACTCCGAGAGTGGTGAAAAGAAAATGGTGGGGGAGGAGGTGGAGG
ACGACGAGGAGGACGGGGGGCGGGCATCGGTGTTTGGGGAAGGACAAGGC
ATCATGAAGAGCATTGTCAGTTACGTTGTGCGGGGTGGACCCCTTGTTCC
TGCTGAAGAGAAAGGAATGCAACAGGAAGAGGACGCGGAGGGATCGAGCA
TTCGCTTGGAGGCAGCTGCTGCTCCTGCGGCTGAGGTTGTCGCTCCTGCT
TCAGGCAAGCAGCAGGAAGCGGAAAAGAAGCAGCACCTACTGTTTGCCGT
GTTGGGAGCGATGATGGGGGCTGCCTTGGTGGTGCTTGCCATAGTGGGTG
CCATGCTGCTCGTGCATCGACGGGGAGAAGATAACGCGGTGGAGGGAGGC
AGCCAGCAGCAACAGCAGCATCAGGAGCCCTTGCTCTACGCTCCTCCGGA
GGGAAGGGCGGAGGCCGGAGGGATGCAGGCATAAATGGAGGCTTGAATAT
ATATGAAATGCGTAT
back to top

protein sequence of NO11G03540.1

>NO11G03540.1-protein ID=NO11G03540.1-protein|Name=NO11G03540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MKLYSKRTLTLVLLALLCVALAVRAQDVQQEQEHQQEDGAEAAQALEASI
TDHEQQHMVDQRATEQEVAEEEPATATMQEEMKKEEKEPVAAVENAKDEE
KKEEEYVPTQPEVQKEKEEPVETKVVKEEDSVPVATEEEKINVAVNHGTY
PADPIELPVAGTETEGETAAPNAKKSEDEVSESEEDWTTAIEKAVVEVIE
QEEKEAAAGWTGLRGSKRVYDGSYEEGEGVGGSPFFFLPSLFSPFFSSSA
APLMVEDENGNGALLVPPRSSSSSFSNGFAVMNDLVNNILSSLPSPSSLP
ALPFGVPTPPEGSRVIVETTHDGSTGKTTETFYVVDSESGEKKMVGEEVE
DDEEDGGRASVFGEGQGIMKSIVSYVVRGGPLVPAEEKGMQQEEDAEGSS
IRLEAAAAPAAEVVAPASGKQQEAEKKQHLLFAVLGAMMGAALVVLAIVG
AMLLVHRRGEDNAVEGGSQQQQQHQEPLLYAPPEGRAEAGGMQA*
back to top
Synonyms
Publications