NO11G03540.1, NO11G03540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03540.1
Unique NameNO11G03540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1801
Alignment locationchr11:1138408..1140322 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1138408..1140322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G03540.1 vs.
Match: EWM24830.1 (hypothetical protein Naga_100234g2 [Nannochloropsis gaditana])

HSP 1 Score: 164.9 bits (416), Expect = 6.600e-37
Identity = 169/488 (34.63%), Postives = 255/488 (52.25%), Query Frame = 0 
Query:   26 QDVQQEQEHQQEDGAEAAQALEASITDHEQQH----MVDQRATEQ-EVAEEEPATATMQEEMKKEEKEPVAAVENAKDEEKKEEEYVPTQPEVQKEKEEPVETKVVKEEDSVPVATEEEKINVAVNHGTYPADPIELPVAGTETEG-----ETAAPNAKKSEDE--VSES-----EEDWTTAIEKAVVEVIEQEEKEAAAGWTGLRGSKRVYDGSYEEGEGVGGSPFFFLPSLFSPFFSSSAAPLMVEDENGNGALLV---PPRSS--SSSFSNGFAVMNDLVNNILSSLPSPSSLPALPFGVPTPPEGSRVIVETTHDGSTGKTTETFYVVDSESGEKKMVGEEVEDDEEDGGRASVFGEGQGIMKSIVSYVVRGGPLVPAEEKGMQQEEDAEGSSIRLEAAAAPAAEVVAPASGKQQ--EAEKKQHLLFAVLGAMMGAALVVLAIV-GAMLLVHRRGEDNAVEGGSQQQQQHQEPLLYAPPEGRAE 489
            + +++E++ ++    +   A E  I + ++ H    + D++  E+ E  EE+   A  + E +K+E+E     E  ++E ++EE+       + +E EE VET+  ++E+      EE+K               E+  +G + +      + +AP+ K   D+  VSE+     EE+W  A+   V +VIE+EEKEA AGW GLRGS R YD + ++   +    FF LP L S  F   AAP  ++ E+G    LV   PP SS  +++ ++ FA MN LVN+  +S P+P   P+ P GVP PP G+ V+VET  D  TGKTTE+FYVVD+ESGE++ VGE V   EE  G  +  G   G MKS+ SYVV                E+ E ++  L+  +AP     AP++G  Q    +   H+L  ++G  +GAA V LA+   AM      GED    G   +++Q QEPLLY PP G  E
Sbjct:  174 EGIEKEEDEEEVVEMKGEVAKEGKIEEEDKDHGEGIVEDEKEEEKGEEGEEDELIAGEKGEEEKDEEEEEEEEEEEEEEGEEEEDNGEEDEGIDEEVEEEVETEGEEDEEDEEDEGEEDK---------------EIAASGEKKKSNGSSMDASAPDVKADGDQLPVSEAPEDAKEEEWLDALASTVEDVIEEEEKEANAGWQGLRGSHRSYDDTDDQDSSL----FFPLPGLLSSLFPP-AAPGSMDMEDGTEPTLVVLSPPSSSDPTTASTSPFAAMNALVNSFFNSFPAPPPPPSFPPGVPPPPPGTTVVVETLRD-ETGKTTESFYVVDAESGEREKVGETVAPAEEASGTETPEG---GFMKSVYSYVV---------------PEEGEDAAQPLQLKSAPP----APSAGGSQTGRGDGTHHVLLVLVGVGVGAAFVALALAFFAMRRGRMEGEDETA-GSLGRRRQQQEPLLYLPPGGEEE 617
The following BLAST results are available for this feature:
BLAST of NO11G03540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24830.16.600e-3734.63hypothetical protein Naga_100234g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03540NO11G03540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03540.1NO11G03540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03540.1.cds1NO11G03540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03540.1.cds2NO11G03540.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03540.1 ID=NO11G03540.1|Name=NO11G03540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1801bp
GTTTCTCTGGGGGGCTGGATCCTTTGTCCCTGCCATATGGGATGGCTTGG
GCCGTCTTTCAACCCCATACGTTGTGCACGGCCATATCCTGTCCGATTTT
TTGTAATCTAAGTCACTTATTGCTTGCTCATTGCTCATGCGTGCACCCTG
TCCTCCATCTAATATGTCCGCTAAAGCGTTCTCGAAACAAAACACGATCT
GCCCGCCGGACTCAATCTTTCTTCTATTTTCCACGCACCTCGTACATATA
TACTATTTCAGACTTGGCCAGTACAATAAAAAAAGATGAAGCTTTACAGC
AAGCGCACGCTGACACTGGTGCTGCTTGCCCTCCTATGCGTGGCGCTCGC
CGTGAGGGCGCAGGACGTGCAGCAGGAGCAGGAGCACCAGCAGGAGGACG
GAGCAGAGGCCGCACAAGCGCTGGAGGCGTCGATTACCGACCACGAGCAG
CAGCACATGGTAGACCAGCGAGCTACTGAACAGGAGGTGGCGGAGGAAGA
ACCAGCTACAGCCACGATGCAGGAGGAGATGAAAAAGGAAGAGAAGGAAC
CCGTTGCAGCTGTGGAAAATGCGAAGGATGAAGAAAAGAAGGAGGAAGAA
TATGTCCCTACCCAGCCGGAGGTCCAAAAGGAAAAGGAAGAACCCGTGGA
AACTAAGGTGGTGAAGGAGGAAGATTCGGTGCCCGTGGCTACGGAAGAAG
AGAAGATCAACGTGGCGGTCAACCATGGAACATATCCTGCTGATCCTATC
GAGCTCCCTGTGGCCGGTACGGAAACCGAGGGCGAGACTGCCGCGCCTAA
TGCTAAGAAGTCTGAGGATGAAGTGTCCGAGAGTGAAGAGGATTGGACCA
CAGCCATCGAAAAGGCCGTTGTGGAAGTAATCGAGCAGGAAGAAAAGGAG
GCAGCAGCGGGGTGGACGGGCTTGCGCGGGTCGAAACGTGTATACGATGG
CAGCTACGAGGAGGGAGAGGGAGTGGGAGGATCGCCCTTCTTCTTCCTCC
CCAGCCTCTTCTCTCCCTTCTTTTCCTCCTCCGCCGCACCTTTAATGGTT
GAGGATGAAAATGGCAATGGTGCTCTCCTCGTTCCTCCTCGTTCCTCCTC
CTCCTCCTTCTCCAATGGCTTCGCCGTCATGAACGACCTGGTCAATAACA
TCCTTTCTTCGCTCCCCAGCCCTTCCTCCCTCCCTGCCCTCCCCTTTGGG
GTGCCAACCCCTCCAGAAGGCTCAAGGGTGATTGTGGAGACCACACACGA
TGGCTCAACGGGCAAGACGACAGAAACCTTTTACGTGGTGGACTCCGAGA
GTGGTGAAAAGAAAATGGTGGGGGAGGAGGTGGAGGACGACGAGGAGGAC
GGGGGGCGGGCATCGGTGTTTGGGGAAGGACAAGGCATCATGAAGAGCAT
TGTCAGTTACGTTGTGCGGGGTGGACCCCTTGTTCCTGCTGAAGAGAAAG
GAATGCAACAGGAAGAGGACGCGGAGGGATCGAGCATTCGCTTGGAGGCA
GCTGCTGCTCCTGCGGCTGAGGTTGTCGCTCCTGCTTCAGGCAAGCAGCA
GGAAGCGGAAAAGAAGCAGCACCTACTGTTTGCCGTGTTGGGAGCGATGA
TGGGGGCTGCCTTGGTGGTGCTTGCCATAGTGGGTGCCATGCTGCTCGTG
CATCGACGGGGAGAAGATAACGCGGTGGAGGGAGGCAGCCAGCAGCAACA
GCAGCATCAGGAGCCCTTGCTCTACGCTCCTCCGGAGGGAAGGGCGGAGG
CCGGAGGGATGCAGGCATAAATGGAGGCTTGAATATATATGAAATGCGTA
T
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protein sequence of NO11G03540.1

>NO11G03540.1-protein ID=NO11G03540.1-protein|Name=NO11G03540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MKLYSKRTLTLVLLALLCVALAVRAQDVQQEQEHQQEDGAEAAQALEASI
TDHEQQHMVDQRATEQEVAEEEPATATMQEEMKKEEKEPVAAVENAKDEE
KKEEEYVPTQPEVQKEKEEPVETKVVKEEDSVPVATEEEKINVAVNHGTY
PADPIELPVAGTETEGETAAPNAKKSEDEVSESEEDWTTAIEKAVVEVIE
QEEKEAAAGWTGLRGSKRVYDGSYEEGEGVGGSPFFFLPSLFSPFFSSSA
APLMVEDENGNGALLVPPRSSSSSFSNGFAVMNDLVNNILSSLPSPSSLP
ALPFGVPTPPEGSRVIVETTHDGSTGKTTETFYVVDSESGEKKMVGEEVE
DDEEDGGRASVFGEGQGIMKSIVSYVVRGGPLVPAEEKGMQQEEDAEGSS
IRLEAAAAPAAEVVAPASGKQQEAEKKQHLLFAVLGAMMGAALVVLAIVG
AMLLVHRRGEDNAVEGGSQQQQQHQEPLLYAPPEGRAEAGGMQA*
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mRNA from alignment at chr11:1138408..1140322+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03540.1 ID=NO11G03540.1|Name=NO11G03540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1915bp|location=Sequence derived from alignment at chr11:1138408..1140322+ (Nannochloropsis oceanica)
GTTTCTCTGGGGGGCTGGATCCTTTGTCCCTGCCATATGGGATGGCTTGG
GCCGTCTTTCAACCCCATACGTTGTGCACGGCCATATCCTGTCCGATTTT
TTGTAATCTAAGTCACTTATTGCTTGCTCATTGCTCATGCGTGCACCCTG
TCCTCCATCTAATATGTCCGCTAAAGCGTTCTCGAAACAAAACACGATCT
GCCCGCCGGACTCAATCTTTCTTCTATTTTCCACGCACCTCGTACATATA
TACTATTTCAGACTTGGCCAGTACAATAAAAAAAGATGAAGCTTTACAGC
AAGCGCACGCTGACACTGGTGCTGCTTGCCCTCCTATGCGTGGCGCTCGC
CGTGAGGGCGCAGGACGTGCAGCAGGAGCAGGAGCACCAGCAGGAGGACG
GAGCAGAGGCCGCACAAGCGCTGGAGGCGTCGATTACCGACCACGAGCAG
CAGCACATGGTAGACCAGCGAGCTACTGAACAGGAGGTGAGTGAGTGGGA
AGAGCGGGAAGGAAGTGCGACGGGAGATTTCAGGACTATGCGTGTGTTTC
TGCTTCCGGCGATCTGATTTCTTTTCCTTTCCGTTTGTGCCATCGCACAG
GTGGCGGAGGAAGAACCAGCTACAGCCACGATGCAGGAGGAGATGAAAAA
GGAAGAGAAGGAACCCGTTGCAGCTGTGGAAAATGCGAAGGATGAAGAAA
AGAAGGAGGAAGAATATGTCCCTACCCAGCCGGAGGTCCAAAAGGAAAAG
GAAGAACCCGTGGAAACTAAGGTGGTGAAGGAGGAAGATTCGGTGCCCGT
GGCTACGGAAGAAGAGAAGATCAACGTGGCGGTCAACCATGGAACATATC
CTGCTGATCCTATCGAGCTCCCTGTGGCCGGTACGGAAACCGAGGGCGAG
ACTGCCGCGCCTAATGCTAAGAAGTCTGAGGATGAAGTGTCCGAGAGTGA
AGAGGATTGGACCACAGCCATCGAAAAGGCCGTTGTGGAAGTAATCGAGC
AGGAAGAAAAGGAGGCAGCAGCGGGGTGGACGGGCTTGCGCGGGTCGAAA
CGTGTATACGATGGCAGCTACGAGGAGGGAGAGGGAGTGGGAGGATCGCC
CTTCTTCTTCCTCCCCAGCCTCTTCTCTCCCTTCTTTTCCTCCTCCGCCG
CACCTTTAATGGTTGAGGATGAAAATGGCAATGGTGCTCTCCTCGTTCCT
CCTCGTTCCTCCTCCTCCTCCTTCTCCAATGGCTTCGCCGTCATGAACGA
CCTGGTCAATAACATCCTTTCTTCGCTCCCCAGCCCTTCCTCCCTCCCTG
CCCTCCCCTTTGGGGTGCCAACCCCTCCAGAAGGCTCAAGGGTGATTGTG
GAGACCACACACGATGGCTCAACGGGCAAGACGACAGAAACCTTTTACGT
GGTGGACTCCGAGAGTGGTGAAAAGAAAATGGTGGGGGAGGAGGTGGAGG
ACGACGAGGAGGACGGGGGGCGGGCATCGGTGTTTGGGGAAGGACAAGGC
ATCATGAAGAGCATTGTCAGTTACGTTGTGCGGGGTGGACCCCTTGTTCC
TGCTGAAGAGAAAGGAATGCAACAGGAAGAGGACGCGGAGGGATCGAGCA
TTCGCTTGGAGGCAGCTGCTGCTCCTGCGGCTGAGGTTGTCGCTCCTGCT
TCAGGCAAGCAGCAGGAAGCGGAAAAGAAGCAGCACCTACTGTTTGCCGT
GTTGGGAGCGATGATGGGGGCTGCCTTGGTGGTGCTTGCCATAGTGGGTG
CCATGCTGCTCGTGCATCGACGGGGAGAAGATAACGCGGTGGAGGGAGGC
AGCCAGCAGCAACAGCAGCATCAGGAGCCCTTGCTCTACGCTCCTCCGGA
GGGAAGGGCGGAGGCCGGAGGGATGCAGGCATAAATGGAGGCTTGAATAT
ATATGAAATGCGTAT
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Coding sequence (CDS) from alignment at chr11:1138408..1140322+

>NO11G03540.1 ID=NO11G03540.1|Name=NO11G03540.1|organism=Nannochloropsis oceanica|type=CDS|length=1485bp|location=Sequence derived from alignment at chr11:1138408..1140322+ (Nannochloropsis oceanica)
ATGAAGCTTTACAGCAAGCGCACGCTGACACTGGTGCTGCTTGCCCTCCT
ATGCGTGGCGCTCGCCGTGAGGGCGCAGGACGTGCAGCAGGAGCAGGAGC
ACCAGCAGGAGGACGGAGCAGAGGCCGCACAAGCGCTGGAGGCGTCGATT
ACCGACCACGAGCAGCAGCACATGGTAGACCAGCGAGCTACTGAACAGGA
GGTGGCGGAGGAAGAACCAGCTACAGCCACGATGCAGGAGGAGATGAAAA
AGGAAGAGAAGGAACCCGTTGCAGCTGTGGAAAATGCGAAGGATGAAGAA
AAGAAGGAGGAAGAATATGTCCCTACCCAGCCGGAGGTCCAAAAGGAAAA
GGAAGAACCCGTGGAAACTAAGGTGGTGAAGGAGGAAGATTCGGTGCCCG
TGGCTACGGAAGAAGAGAAGATCAACGTGGCGGTCAACCATGGAACATAT
CCTGCTGATCCTATCGAGCTCCCTGTGGCCGGTACGGAAACCGAGGGCGA
GACTGCCGCGCCTAATGCTAAGAAGTCTGAGGATGAAGTGTCCGAGAGTG
AAGAGGATTGGACCACAGCCATCGAAAAGGCCGTTGTGGAAGTAATCGAG
CAGGAAGAAAAGGAGGCAGCAGCGGGGTGGACGGGCTTGCGCGGGTCGAA
ACGTGTATACGATGGCAGCTACGAGGAGGGAGAGGGAGTGGGAGGATCGC
CCTTCTTCTTCCTCCCCAGCCTCTTCTCTCCCTTCTTTTCCTCCTCCGCC
GCACCTTTAATGGTTGAGGATGAAAATGGCAATGGTGCTCTCCTCGTTCC
TCCTCGTTCCTCCTCCTCCTCCTTCTCCAATGGCTTCGCCGTCATGAACG
ACCTGGTCAATAACATCCTTTCTTCGCTCCCCAGCCCTTCCTCCCTCCCT
GCCCTCCCCTTTGGGGTGCCAACCCCTCCAGAAGGCTCAAGGGTGATTGT
GGAGACCACACACGATGGCTCAACGGGCAAGACGACAGAAACCTTTTACG
TGGTGGACTCCGAGAGTGGTGAAAAGAAAATGGTGGGGGAGGAGGTGGAG
GACGACGAGGAGGACGGGGGGCGGGCATCGGTGTTTGGGGAAGGACAAGG
CATCATGAAGAGCATTGTCAGTTACGTTGTGCGGGGTGGACCCCTTGTTC
CTGCTGAAGAGAAAGGAATGCAACAGGAAGAGGACGCGGAGGGATCGAGC
ATTCGCTTGGAGGCAGCTGCTGCTCCTGCGGCTGAGGTTGTCGCTCCTGC
TTCAGGCAAGCAGCAGGAAGCGGAAAAGAAGCAGCACCTACTGTTTGCCG
TGTTGGGAGCGATGATGGGGGCTGCCTTGGTGGTGCTTGCCATAGTGGGT
GCCATGCTGCTCGTGCATCGACGGGGAGAAGATAACGCGGTGGAGGGAGG
CAGCCAGCAGCAACAGCAGCATCAGGAGCCCTTGCTCTACGCTCCTCCGG
AGGGAAGGGCGGAGGCCGGAGGGATGCAGGCATAA
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Synonyms
Publications