NO11G03300, NO11G03300 (gene) Nannochloropsis oceanica

Overview
NameNO11G03300
Unique NameNO11G03300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1269
Alignment locationchr11:1042074..1043342 -

Link to JBrowse

Properties
Property NameValue
Descriptionp60-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1042074..1043342 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011687Nop53/GLTSCR2
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
GO:0000027ribosomal large subunit assembly
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
GO:0005654nucleoplasm
GO:0005634nucleus
Homology
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BLAST of NO11G03300 vs. NCBI_GenBank
Match: EWM24868.1 (P60-like protein [Nannochloropsis gaditana])

HSP 1 Score: 294.7 bits (753), Expect = 4.700e-76
Identity = 233/423 (55.08%), Postives = 265/423 (62.65%), Query Frame = 0 
Query:    1 MGRLDSSRKGNIARKRRLQELSEEFEADRALRVEESLDAAKPDEELFFVDTSAATSLPPTKSKAEKRRRFFSEKVSCVAMPSVHLVKAVERIVKGQQSGKVGGEVKTGTGPNDKPTKATLRSKSVTKKDEEEIYDIWGTETGGKKXXXXXXXXXXXAGPVLVPKSKLRVLKAPLASLVPLIAKPLGGQSYHPSAEEHQEALSVAVAVEEKRDAALAKMKAPLAVMSEATKALLLRDSE-EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQAVLDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRTRSLAVPLSDELKGSLRALRTKGSLASETLEGLQRRGQYEVVPQRKSARPRQRVKYVEKFRGE 423
            MGRLDS+RKGNIARKRRLQ ++EEFEADRAL+VEESLDAAKPDE+LFFVDTSA T+LPPT+SKAEKRRRFFSEKVS VAMPS HLVKAV+RIVK QQ  K       G G      K ++  +S  K +++ +YD+W    G    XXXXXXXXX   P  VPKSK R LK PLAS + LI +PLGGQSY+P AE+HQ+AL  AV+VEEKR  AL K+KAPL+VMSE TKAL+L DSE +                                  XXXXXXXXXXXXXXXXX       XXXXXXXXX                                                   ++  S  VPLSDEL GSLR +RTKG+LASETL  LQRRGQYEVVPQRKSARP+ RVK+VEK RGE
Sbjct:    1 MGRLDSARKGNIARKRRLQAVAEEFEADRALQVEESLDAAKPDEDLFFVDTSADTTLPPTRSKAEKRRRFFSEKVSSVAMPSEHLVKAVQRIVKSQQKEKKAKPDDDGAG------KTSIHRQSKGKVEQQGLYDMWDAGKGSTGGXXXXXXXXXCEAPP-VPKSKKRPLKPPLASTLSLIERPLGGQSYNPLAEDHQQALVAAVSVEEKRKKALEKLKAPLSVMSEETKALILSDSESDAEEEGALEERSDGDAGVATKRMLRRKGKQTKAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKALRRREAEAGGAKRKRQTDDQNVPKNHRSQHFVPRDLPREKVLLPMDKNPMQAPSFPVPLSDELGGSLRTVRTKGNLASETLVSLQRRGQYEVVPQRKSARPKPRVKFVEKIRGE 416
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BLAST of NO11G03300 vs. NCBI_GenBank
Match: XP_005854215.1 (hypothetical protein NGA_2111100, partial [Nannochloropsis gaditana CCMP526] >EKU22145.1 hypothetical protein NGA_2111100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 292.0 bits (746), Expect = 3.000e-75
Identity = 232/423 (54.85%), Postives = 264/423 (62.41%), Query Frame = 0 
Query:    1 MGRLDSSRKGNIARKRRLQELSEEFEADRALRVEESLDAAKPDEELFFVDTSAATSLPPTKSKAEKRRRFFSEKVSCVAMPSVHLVKAVERIVKGQQSGKVGGEVKTGTGPNDKPTKATLRSKSVTKKDEEEIYDIWGTETGGKKXXXXXXXXXXXAGPVLVPKSKLRVLKAPLASLVPLIAKPLGGQSYHPSAEEHQEALSVAVAVEEKRDAALAKMKAPLAVMSEATKALLLRDSE-EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQAVLDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRTRSLAVPLSDELKGSLRALRTKGSLASETLEGLQRRGQYEVVPQRKSARPRQRVKYVEKFRGE 423
            MGRLDS+RKGNIARKRRLQ ++EEFEADRAL+VEESLDAAKPDE+LFFVDTSA T+LPPT+SKAEKRRRFFSEKVS VAMPS HLVKAV+RIVK QQ  K       G G      K ++  +S  K +++ +YD+W    G    XXXXXXXXX   P  VPKSK R LK PLAS + LI +PLGGQSY+P AE+HQ+AL  AV+VEEKR  AL K+KAPL+VMSE TKAL+L DSE +                                  XXXXXXXXXXXXXXXXX       XXXXXXXXX                                                   ++  S  VPLSDEL GSLR +RTKG+LASETL  LQRRGQYEVVPQRKSARP+ RVK+V K RGE
Sbjct:   11 MGRLDSARKGNIARKRRLQAVAEEFEADRALQVEESLDAAKPDEDLFFVDTSADTTLPPTRSKAEKRRRFFSEKVSSVAMPSEHLVKAVQRIVKSQQKEKKAKPDDDGAG------KTSIHRQSKGKVEQQGLYDMWDAGKGSTGGXXXXXXXXXCEAPP-VPKSKKRPLKPPLASTLSLIERPLGGQSYNPLAEDHQQALVAAVSVEEKRKKALEKLKAPLSVMSEETKALILSDSESDAEEEGALEERSDGDAGVATKRMLRRKGKQTKAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKALRRREAEAGGAKRKRQTDDQNVPKNHRSQHFVPRDLPREKVLLPMDKNPMQAPSFPVPLSDELGGSLRTVRTKGNLASETLVSLQRRGQYEVVPQRKSARPKPRVKFVGKIRGE 426
The following BLAST results are available for this feature:
BLAST of NO11G03300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24868.14.700e-7655.08P60-like protein [Nannochloropsis gaditana][more]
XP_005854215.13.000e-7554.85hypothetical protein NGA_2111100, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G03300.1NO11G03300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591869gene_5245Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100709g1gene5619Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G03300.1NO11G03300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G03300 ID=NO11G03300|Name=NO11G03300|organism=Nannochloropsis oceanica|type=gene|length=1269bp
ATGGGACGGCTTGACAGTTCCCGAAAGGGCAACATTGCCCGAAAGCGGCG
CCTGCAGGAGTTGTCGGAGGAGTTTGAGGCAGACCGGGCCTTGCGAGTGG
AGGAGTCCTTGGACGCGGCCAAGCCCGATGAGGAGCTCTTTTTTGTGGAC
ACCAGCGCCGCTACATCCCTTCCCCCAACAAAGAGCAAGGCCGAAAAGCG
TCGACGCTTCTTCAGCGAGAAAGTGAGCTGCGTAGCCATGCCCTCAGTGC
ATTTGGTGAAGGCGGTGGAGCGCATCGTCAAGGGCCAGCAGAGCGGCAAG
GTGGGCGGGGAGGTCAAGACGGGGACAGGCCCGAACGACAAGCCCACCAA
GGCCACTTTACGATCAAAGTCTGTGACCAAAAAGGACGAAGAAGAAATTT
ACGACATTTGGGGCACAGAGACAGGTGGGAAGAAGGGAGGGAAGGGCAAG
GGGAAAAAGGGGAAGAAGGCGGGGCCGGTACTAGTGCCCAAGTCGAAGCT
TCGAGTCCTAAAGGCGCCCTTGGCCTCGCTCGTGCCTTTGATTGCCAAGC
CATTAGGGGGACAATCTTATCACCCTTCTGCCGAGGAACACCAGGAGGCC
TTGTCAGTGGCGGTGGCAGTGGAGGAGAAGAGGGACGCGGCGCTGGCCAA
GATGAAGGCGCCGCTTGCGGTCATGAGCGAAGCGACCAAGGCATTGCTAT
TGAGAGATTCTGAGGAGGAGGACGAAGGAGAGGAAGGACAAGATGAGGAA
GAGGAAAAGGAGGGGGCGGAAGAGGAGAAAGGAGAAGTGTTGACGAAACG
GATGTTGAGGCGGAAAGGGAAGATGACCAAGGCCGAGCGGAATAAGCAGC
GGCGACGCAAGGCCATGGAACACCAAGCTGTATTGGACAAAGAACAAAAT
GCCCTGTCCCAGCAAGCATCCCGCGCTCGGGAGCACGCCAAGGCCCTCCG
TCGTGAGGACAAAGCGGTGAAGAAGGAGAAGAAGAAGGGCAGTGGCAGCA
GTCGAAACAGGCCATTTGCCCCTCTTGATCTCCCAACGGTCCCTGTGCCG
TTACCCCAAGACAAGGACCCTCTGCGCACTCGTTCTTTGGCCGTCCCCTT
GTCTGATGAGCTGAAGGGAAGCCTTCGCGCGCTGCGGACGAAGGGTAGCT
TGGCATCCGAGACATTGGAAGGGTTGCAGCGACGAGGGCAGTATGAGGTA
GTACCGCAACGAAAGAGCGCCCGACCCAGACAGCGTGTTAAATACGTGGA
AAAGTTCCGCGGGGAGTAG
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protein sequence of NO11G03300.1

>NO11G03300.1-protein ID=NO11G03300.1-protein|Name=NO11G03300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MGRLDSSRKGNIARKRRLQELSEEFEADRALRVEESLDAAKPDEELFFVD
TSAATSLPPTKSKAEKRRRFFSEKVSCVAMPSVHLVKAVERIVKGQQSGK
VGGEVKTGTGPNDKPTKATLRSKSVTKKDEEEIYDIWGTETGGKKGGKGK
GKKGKKAGPVLVPKSKLRVLKAPLASLVPLIAKPLGGQSYHPSAEEHQEA
LSVAVAVEEKRDAALAKMKAPLAVMSEATKALLLRDSEEEDEGEEGQDEE
EEKEGAEEEKGEVLTKRMLRRKGKMTKAERNKQRRRKAMEHQAVLDKEQN
ALSQQASRAREHAKALRREDKAVKKEKKKGSGSSRNRPFAPLDLPTVPVP
LPQDKDPLRTRSLAVPLSDELKGSLRALRTKGSLASETLEGLQRRGQYEV
VPQRKSARPRQRVKYVEKFRGE*
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Synonyms
Publications