NO11G03300.1, NO11G03300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03300.1
Unique NameNO11G03300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1269
Alignment locationchr11:1042074..1043342 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1042074..1043342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO11G03300.1 vs.
Match: EWM24868.1 (P60-like protein [Nannochloropsis gaditana])

HSP 1 Score: 430.6 bits (1106), Expect = 5.500e-117
Identity = 269/433 (62.12%), Postives = 315/433 (72.75%), Query Frame = 0 
Query:    1 MGRLDSSRKGNIARKRRLQELSEEFEADRALRVEESLDAAKPDEELFFVDTSAATSLPPTKSKAEKRRRFFSEKVSCVAMPSVHLVKAVERIVKGQQSGKVGGEVKTGTGPNDKPTKATLRSKSVTKKDEEEIYDIWGTETGGKKGGKGKGKKGKKAGPVLVPKSKLRVLKAPLASLVPLIAKPLGGQSYHPSAEEHQEALSVAVAVEEKRDAALAKMKAPLAVMSEATKALLLRDSEEEDEGEEGQDEEEEKEGAEEEKGE----VLTKRMLRRKGKMTKAERNKQRRRKAMEHQAVLDKEQNALSQQASRAREHAKALRREDKAVKKEKKKGSGSSRNRP-------FAPLDLPTVPVPLPQDKDPLRTRSLAVPLSDELKGSLRALRTKGSLASETLEGLQRRGQYEVVPQRKSARPRQRVKYVEKFRGE 423
            MGRLDS+RKGNIARKRRLQ ++EEFEADRAL+VEESLDAAKPDE+LFFVDTSA T+LPPT+SKAEKRRRFFSEKVS VAMPS HLVKAV+RIVK QQ  K       G G      K ++  +S  K +++ +YD+W     G  GGKGK KKGKK     VPKSK R LK PLAS + LI +PLGGQSY+P AE+HQ+AL  AV+VEEKR  AL K+KAPL+VMSE TKAL+L DSE           + E+EGA EE+ +    V TKRMLRRKGK TKAERNKQRRRK  EH+A L++E+  L Q+ASRA+E+AKALRR +      K+K     +N P       F P DLP   V LP DK+P++  S  VPLSDEL GSLR +RTKG+LASETL  LQRRGQYEVVPQRKSARP+ RVK+VEK RGE
Sbjct:    1 MGRLDSARKGNIARKRRLQAVAEEFEADRALQVEESLDAAKPDEDLFFVDTSADTTLPPTRSKAEKRRRFFSEKVSSVAMPSEHLVKAVQRIVKSQQKEKKAKPDDDGAG------KTSIHRQSKGKVEQQGLYDMWDAGK-GSTGGKGKSKKGKKCEAPPVPKSKKRPLKPPLASTLSLIERPLGGQSYNPLAEDHQQALVAAVSVEEKRKKALEKLKAPLSVMSEETKALILSDSE----------SDAEEEGALEERSDGDAGVATKRMLRRKGKQTKAERNKQRRRKIQEHEAALERERKHLLQEASRAQEYAKALRRREAEAGGAKRKRQTDDQNVPKNHRSQHFVPRDLPREKVLLPMDKNPMQAPSFPVPLSDELGGSLRTVRTKGNLASETLVSLQRRGQYEVVPQRKSARPKPRVKFVEKIRGE 416
The following BLAST results are available for this feature:
BLAST of NO11G03300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24868.15.500e-11762.12P60-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03300NO11G03300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03300.1NO11G03300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03300.1.cds1NO11G03300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03300.1 ID=NO11G03300.1|Name=NO11G03300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp
ATGGGACGGCTTGACAGTTCCCGAAAGGGCAACATTGCCCGAAAGCGGCG
CCTGCAGGAGTTGTCGGAGGAGTTTGAGGCAGACCGGGCCTTGCGAGTGG
AGGAGTCCTTGGACGCGGCCAAGCCCGATGAGGAGCTCTTTTTTGTGGAC
ACCAGCGCCGCTACATCCCTTCCCCCAACAAAGAGCAAGGCCGAAAAGCG
TCGACGCTTCTTCAGCGAGAAAGTGAGCTGCGTAGCCATGCCCTCAGTGC
ATTTGGTGAAGGCGGTGGAGCGCATCGTCAAGGGCCAGCAGAGCGGCAAG
GTGGGCGGGGAGGTCAAGACGGGGACAGGCCCGAACGACAAGCCCACCAA
GGCCACTTTACGATCAAAGTCTGTGACCAAAAAGGACGAAGAAGAAATTT
ACGACATTTGGGGCACAGAGACAGGTGGGAAGAAGGGAGGGAAGGGCAAG
GGGAAAAAGGGGAAGAAGGCGGGGCCGGTACTAGTGCCCAAGTCGAAGCT
TCGAGTCCTAAAGGCGCCCTTGGCCTCGCTCGTGCCTTTGATTGCCAAGC
CATTAGGGGGACAATCTTATCACCCTTCTGCCGAGGAACACCAGGAGGCC
TTGTCAGTGGCGGTGGCAGTGGAGGAGAAGAGGGACGCGGCGCTGGCCAA
GATGAAGGCGCCGCTTGCGGTCATGAGCGAAGCGACCAAGGCATTGCTAT
TGAGAGATTCTGAGGAGGAGGACGAAGGAGAGGAAGGACAAGATGAGGAA
GAGGAAAAGGAGGGGGCGGAAGAGGAGAAAGGAGAAGTGTTGACGAAACG
GATGTTGAGGCGGAAAGGGAAGATGACCAAGGCCGAGCGGAATAAGCAGC
GGCGACGCAAGGCCATGGAACACCAAGCTGTATTGGACAAAGAACAAAAT
GCCCTGTCCCAGCAAGCATCCCGCGCTCGGGAGCACGCCAAGGCCCTCCG
TCGTGAGGACAAAGCGGTGAAGAAGGAGAAGAAGAAGGGCAGTGGCAGCA
GTCGAAACAGGCCATTTGCCCCTCTTGATCTCCCAACGGTCCCTGTGCCG
TTACCCCAAGACAAGGACCCTCTGCGCACTCGTTCTTTGGCCGTCCCCTT
GTCTGATGAGCTGAAGGGAAGCCTTCGCGCGCTGCGGACGAAGGGTAGCT
TGGCATCCGAGACATTGGAAGGGTTGCAGCGACGAGGGCAGTATGAGGTA
GTACCGCAACGAAAGAGCGCCCGACCCAGACAGCGTGTTAAATACGTGGA
AAAGTTCCGCGGGGAGTAG
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protein sequence of NO11G03300.1

>NO11G03300.1-protein ID=NO11G03300.1-protein|Name=NO11G03300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MGRLDSSRKGNIARKRRLQELSEEFEADRALRVEESLDAAKPDEELFFVD
TSAATSLPPTKSKAEKRRRFFSEKVSCVAMPSVHLVKAVERIVKGQQSGK
VGGEVKTGTGPNDKPTKATLRSKSVTKKDEEEIYDIWGTETGGKKGGKGK
GKKGKKAGPVLVPKSKLRVLKAPLASLVPLIAKPLGGQSYHPSAEEHQEA
LSVAVAVEEKRDAALAKMKAPLAVMSEATKALLLRDSEEEDEGEEGQDEE
EEKEGAEEEKGEVLTKRMLRRKGKMTKAERNKQRRRKAMEHQAVLDKEQN
ALSQQASRAREHAKALRREDKAVKKEKKKGSGSSRNRPFAPLDLPTVPVP
LPQDKDPLRTRSLAVPLSDELKGSLRALRTKGSLASETLEGLQRRGQYEV
VPQRKSARPRQRVKYVEKFRGE*
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mRNA from alignment at chr11:1042074..1043342-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03300.1 ID=NO11G03300.1|Name=NO11G03300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp|location=Sequence derived from alignment at chr11:1042074..1043342- (Nannochloropsis oceanica)
ATGGGACGGCTTGACAGTTCCCGAAAGGGCAACATTGCCCGAAAGCGGCG
CCTGCAGGAGTTGTCGGAGGAGTTTGAGGCAGACCGGGCCTTGCGAGTGG
AGGAGTCCTTGGACGCGGCCAAGCCCGATGAGGAGCTCTTTTTTGTGGAC
ACCAGCGCCGCTACATCCCTTCCCCCAACAAAGAGCAAGGCCGAAAAGCG
TCGACGCTTCTTCAGCGAGAAAGTGAGCTGCGTAGCCATGCCCTCAGTGC
ATTTGGTGAAGGCGGTGGAGCGCATCGTCAAGGGCCAGCAGAGCGGCAAG
GTGGGCGGGGAGGTCAAGACGGGGACAGGCCCGAACGACAAGCCCACCAA
GGCCACTTTACGATCAAAGTCTGTGACCAAAAAGGACGAAGAAGAAATTT
ACGACATTTGGGGCACAGAGACAGGTGGGAAGAAGGGAGGGAAGGGCAAG
GGGAAAAAGGGGAAGAAGGCGGGGCCGGTACTAGTGCCCAAGTCGAAGCT
TCGAGTCCTAAAGGCGCCCTTGGCCTCGCTCGTGCCTTTGATTGCCAAGC
CATTAGGGGGACAATCTTATCACCCTTCTGCCGAGGAACACCAGGAGGCC
TTGTCAGTGGCGGTGGCAGTGGAGGAGAAGAGGGACGCGGCGCTGGCCAA
GATGAAGGCGCCGCTTGCGGTCATGAGCGAAGCGACCAAGGCATTGCTAT
TGAGAGATTCTGAGGAGGAGGACGAAGGAGAGGAAGGACAAGATGAGGAA
GAGGAAAAGGAGGGGGCGGAAGAGGAGAAAGGAGAAGTGTTGACGAAACG
GATGTTGAGGCGGAAAGGGAAGATGACCAAGGCCGAGCGGAATAAGCAGC
GGCGACGCAAGGCCATGGAACACCAAGCTGTATTGGACAAAGAACAAAAT
GCCCTGTCCCAGCAAGCATCCCGCGCTCGGGAGCACGCCAAGGCCCTCCG
TCGTGAGGACAAAGCGGTGAAGAAGGAGAAGAAGAAGGGCAGTGGCAGCA
GTCGAAACAGGCCATTTGCCCCTCTTGATCTCCCAACGGTCCCTGTGCCG
TTACCCCAAGACAAGGACCCTCTGCGCACTCGTTCTTTGGCCGTCCCCTT
GTCTGATGAGCTGAAGGGAAGCCTTCGCGCGCTGCGGACGAAGGGTAGCT
TGGCATCCGAGACATTGGAAGGGTTGCAGCGACGAGGGCAGTATGAGGTA
GTACCGCAACGAAAGAGCGCCCGACCCAGACAGCGTGTTAAATACGTGGA
AAAGTTCCGCGGGGAGTAG
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Coding sequence (CDS) from alignment at chr11:1042074..1043342-

>NO11G03300.1 ID=NO11G03300.1|Name=NO11G03300.1|organism=Nannochloropsis oceanica|type=CDS|length=1269bp|location=Sequence derived from alignment at chr11:1042074..1043342- (Nannochloropsis oceanica)
ATGGGACGGCTTGACAGTTCCCGAAAGGGCAACATTGCCCGAAAGCGGCG
CCTGCAGGAGTTGTCGGAGGAGTTTGAGGCAGACCGGGCCTTGCGAGTGG
AGGAGTCCTTGGACGCGGCCAAGCCCGATGAGGAGCTCTTTTTTGTGGAC
ACCAGCGCCGCTACATCCCTTCCCCCAACAAAGAGCAAGGCCGAAAAGCG
TCGACGCTTCTTCAGCGAGAAAGTGAGCTGCGTAGCCATGCCCTCAGTGC
ATTTGGTGAAGGCGGTGGAGCGCATCGTCAAGGGCCAGCAGAGCGGCAAG
GTGGGCGGGGAGGTCAAGACGGGGACAGGCCCGAACGACAAGCCCACCAA
GGCCACTTTACGATCAAAGTCTGTGACCAAAAAGGACGAAGAAGAAATTT
ACGACATTTGGGGCACAGAGACAGGTGGGAAGAAGGGAGGGAAGGGCAAG
GGGAAAAAGGGGAAGAAGGCGGGGCCGGTACTAGTGCCCAAGTCGAAGCT
TCGAGTCCTAAAGGCGCCCTTGGCCTCGCTCGTGCCTTTGATTGCCAAGC
CATTAGGGGGACAATCTTATCACCCTTCTGCCGAGGAACACCAGGAGGCC
TTGTCAGTGGCGGTGGCAGTGGAGGAGAAGAGGGACGCGGCGCTGGCCAA
GATGAAGGCGCCGCTTGCGGTCATGAGCGAAGCGACCAAGGCATTGCTAT
TGAGAGATTCTGAGGAGGAGGACGAAGGAGAGGAAGGACAAGATGAGGAA
GAGGAAAAGGAGGGGGCGGAAGAGGAGAAAGGAGAAGTGTTGACGAAACG
GATGTTGAGGCGGAAAGGGAAGATGACCAAGGCCGAGCGGAATAAGCAGC
GGCGACGCAAGGCCATGGAACACCAAGCTGTATTGGACAAAGAACAAAAT
GCCCTGTCCCAGCAAGCATCCCGCGCTCGGGAGCACGCCAAGGCCCTCCG
TCGTGAGGACAAAGCGGTGAAGAAGGAGAAGAAGAAGGGCAGTGGCAGCA
GTCGAAACAGGCCATTTGCCCCTCTTGATCTCCCAACGGTCCCTGTGCCG
TTACCCCAAGACAAGGACCCTCTGCGCACTCGTTCTTTGGCCGTCCCCTT
GTCTGATGAGCTGAAGGGAAGCCTTCGCGCGCTGCGGACGAAGGGTAGCT
TGGCATCCGAGACATTGGAAGGGTTGCAGCGACGAGGGCAGTATGAGGTA
GTACCGCAACGAAAGAGCGCCCGACCCAGACAGCGTGTTAAATACGTGGA
AAAGTTCCGCGGGGAGTAG
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Synonyms
Publications