NO11G03250, NO11G03250 (gene) Nannochloropsis oceanica

Overview
NameNO11G03250
Unique NameNO11G03250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length630
Alignment locationchr11:1009553..1010182 -

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Properties
Property NameValue
DescriptionDCC family protein At1g52590, chloroplastic
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1009553..1010182 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007263DUF393
Homology
BLAST of NO11G03250 vs. NCBI_GenBank
Match: XP_005853346.1 (hypothetical protein NGA_0723100 [Nannochloropsis gaditana CCMP526] >EKU23017.1 hypothetical protein NGA_0723100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 283.9 bits (725), Expect = 4.100e-73
Identity = 138/156 (88.46%), Postives = 148/156 (94.87%), Query Frame = 0
Query:   54 MDEALATFNRVFPIGTAGADLRPVVLFDGVCMFCNRGIDTLLALDINRKIRVAPLQSELGRSLMTVCGRDPDDLSSMLVVESDKRLSVKSDAAIRIAEVAAPHPLLGGALEKAAKMLLPQTMRDGAYDQVAENRYSIMGKRDECRLPDPGDDRFIA 210
            MDEA  TFN+VFP+ TAGADLRPVVLFDGVCMFCNRGIDTLLALD+NRKIRVAPLQSELGR+LMTVCGRDPDDLSSMLVVE+DK L  KSDAAIRIAEVAAPHPLLGGALE+AA++LLPQ MRDGAYD VAENRYSI+GKR+ECRLPDPGDDRFIA
Sbjct:    1 MDEAQKTFNKVFPVNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGRALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPDPGDDRFIA 156          
BLAST of NO11G03250 vs. NCBI_GenBank
Match: EWM24881.1 (Putative thiol-disulfide oxidoreductase DCC [Nannochloropsis gaditana])

HSP 1 Score: 283.5 bits (724), Expect = 5.400e-73
Identity = 154/215 (71.63%), Postives = 171/215 (79.53%), Query Frame = 0
Query:    1 MRAFVYRAGPATWMRRAATTAGKI---TTAQFST---ASTSSTGASVDATAIPPPPRPTMDEALATFNRVFPIGTAGADLRPVVLFDGVCMFCNRGIDTLLALDINRKIRVAPLQSELGRSLMTVCGRDPDDLSSMLVVESDKRLSVKSDAAIRIAEVAAPHPLLGGALEKAAKMLLPQTMRDGAYDQVAENRYSIMGKRDECRLPDPGDDRFIA 210
            MRAFV+R+  +T +    T    I   +TA+FST                     PRP+MDEA  TFN+VFP+ TAGADLRPVVLFDGVCMFCNRGIDTLLALD+NRKIRVAPLQSELG +LMTVCGRDPDDLSSMLVVE+DK L  KSDAAIRIAEVAAPHPLLGGALE+AA++LLPQ MRDGAYD VAENRYSI+GKR+ECRLPDPGDDRFIA
Sbjct:   23 MRAFVFRSQVSTKLVSRCTRHRWIPQGSTARFSTXXXXXXXXXXXXXXXXXXXXSPRPSMDEAQKTFNKVFPVNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPDPGDDRFIA 237          
BLAST of NO11G03250 vs. NCBI_GenBank
Match: GAX79384.1 (hypothetical protein CEUSTIGMA_g6826.t1 [Chlamydomonas eustigma])

HSP 1 Score: 124.8 bits (312), Expect = 3.200e-25
Identity = 68/147 (46.26%), Postives = 92/147 (62.59%), Query Frame = 0
Query:   65 FPIGTAGADLRPVVLFDGVCMFCNRGIDTLLALDINRKIRVAPLQSELGRSLMTVCGRDPDDLSSMLVVESDKRLSVKSDAAIRIAE-VAAPHPLLGGALEKAAKMLLPQTMRDGAYDQVAENRYSIMGKRDECRLPDPG-DDRFIA 210
            +P      D RPV+L+DGVC  CN  ++ +L LD   + R+A LQS  GR L+  CGR PDD+SS++VVE   +  +KSDA +RIA+ ++ P PL          + +P  +RD  YD VA+NRYSI+GKRD CRL D    +RFIA
Sbjct:   80 YPADDFANDRRPVILYDGVCNLCNGAVNLMLDLDPRGEFRMAALQSPAGRRLLQTCGRQPDDISSIVVVERGGKHHIKSDAILRIAQGLSNPFPLFA-----LFGVPVPPFLRDSLYDLVADNRYSILGKRDVCRLKDDRFSERFIA 221          
BLAST of NO11G03250 vs. NCBI_GenBank
Match: OLP91065.1 (DCC family protein, chloroplastic [Symbiodinium microadriaticum])

HSP 1 Score: 122.5 bits (306), Expect = 1.600e-24
Identity = 65/138 (47.10%), Postives = 92/138 (66.67%), Query Frame = 0
Query:   73 DLRPVVLFDGVCMFCNRGIDTLLALDIN-RKIRVAPLQSELGRSLMTVCGRDPDDLSSMLVVESDKRLSVKSDAAIRIAEVAAPHPLLGGALEKAAKMLLPQTMRDGAYDQVAENRYSIMGKRDECRLPDPG-DDRFI 209
            D RP+VL+DGVC  CN  +D  L  D + R++R + LQSE+GR L+  CGR  +DLSSMLVV+ D     +SDA + + +      +L G L KAA+ L+P+ +RDGAY+ VA+NRY ++G+R E RL   G +DRF+
Sbjct:   57 DDRPIVLYDGVCNMCNSAVDVALQKDPDGRRLRFSALQSEVGRQLLVFCGRRAEDLSSMLVVKPDGECLSQSDAVVFVGQQLEGSSVLQG-LSKAAQALVPKPLRDGAYNVVAKNRYRVLGRRTELRLKQDGMEDRFV 193          
BLAST of NO11G03250 vs. NCBI_GenBank
Match: XP_024399173.1 (DCC family protein At1g52590, chloroplastic-like [Physcomitrella patens] >PNR62289.1 hypothetical protein PHYPA_000713 [Physcomitrella patens])

HSP 1 Score: 119.8 bits (299), Expect = 1.000e-23
Identity = 66/139 (47.48%), Postives = 89/139 (64.03%), Query Frame = 0
Query:   73 DLRPVVLFDGVCMFCNRGIDTLLALDINRKIRVAPLQSELGRSLMTVCGRDPDDLSSMLVVESDKRLSVKSDAAIRIAEVAAPHPLLGGALEKAAK--MLLPQTMRDGAYDQVAENRYSIMGKRDECRLPDPG-DDRFI 209
            D RP+VLFDGVC FCN G++ +L  D   ++R+A LQSE GR+L+   GR  DDLSS++++E D R  +KS+  +R A+       LG  L       +L P   RD  YD VA NRYSI+GKRD+CR+ DP  +DRF+
Sbjct:  118 DSRPIVLFDGVCNFCNAGVNFVLDNDPEGRVRMAALQSEAGRALLLRAGRLSDDLSSLVLIEKD-RSYIKSEGVLRTAQ------YLGNLLPPVGSLGLLFPLFFRDFVYDNVANNRYSILGKRDQCRVSDPRFNDRFV 249          
BLAST of NO11G03250 vs. NCBI_GenBank
Match: GAX15700.1 (hypothetical protein FisN_3Hh174 [Fistulifera solaris])

HSP 1 Score: 117.9 bits (294), Expect = 3.900e-23
Identity = 68/160 (42.50%), Postives = 92/160 (57.50%), Query Frame = 0
Query:   52 PTMDEALATFNRVFPIGTAGADLRPVVLFDGVCMFCNRGIDTLLALDINRKIRVAPLQSELGRSLMTVCGRDPDDLSSMLVVESDKRLSVKSDAAIRIAEVAAPHPLLGGALEKAAKMLLPQTMRDGAYDQVAENRYSIMGKRDECRLPDPGD--DRFIA 210
            PTM        RVF       D RPVVLFDGVC  CN  ++  L  D   ++R A LQS +GRSL+   GR  DD+SS+++V +D    +KSDA ++I E  +P  L    +    + L+P  +RD  YDQVA+NRY +MGKRD CR     +  DRF++
Sbjct:   48 PTMLPPRVVSRRVFQ-----NDQRPVVLFDGVCNLCNNAVNLALDWDPQGRLRFAALQSAVGRSLLQTHGRQADDISSIVLVNADGAY-IKSDAILKITEALSPPFLPAREVALLGRFLVPAVVRDLIYDQVADNRYQLMGKRDVCRFDADNEFADRFVS 201          
BLAST of NO11G03250 vs. NCBI_GenBank
Match: EJK44712.1 (hypothetical protein THAOC_36727, partial [Thalassiosira oceanica])

HSP 1 Score: 117.5 bits (293), Expect = 5.100e-23
Identity = 67/139 (48.20%), Postives = 89/139 (64.03%), Query Frame = 0
Query:   73 DLRPVVLFDGVCMFCNRGIDTLLALDINRKIRVAPLQSELGRSLMTVCGRDPDDLSSMLVVESDKRLSVKSDAAIRIAEVAAPHPLLG-GALEKAAKMLLPQTMRDGAYDQVAENRYSIMGKRDECRLPDPG--DDRFI 209
            D RPV+LFDGVC  CN  ++  L  D   K+R + LQS++GRSL+   GR  DD+SS+++V +D   + KSDA + I+E   P P +    L + A  L+PQ +RD  YD VA+NRYSIMG RDECR    G  DDRF+
Sbjct:  103 DDRPVILFDGVCNLCNNAVNLALDWDPKGKLRFSALQSDVGRSLLQAHGRAADDISSIVLVRTDGAYT-KSDAILGISEELNPLPFVPMKPLSRLASGLVPQFLRDLIYDGVADNRYSIMGIRDECRFDADGEFDDRFV 240          
BLAST of NO11G03250 vs. NCBI_GenBank
Match: XP_002503125.1 (predicted protein, partial [Micromonas commoda] >ACO64383.1 predicted protein, partial [Micromonas commoda])

HSP 1 Score: 115.9 bits (289), Expect = 1.500e-22
Identity = 61/127 (48.03%), Postives = 83/127 (65.35%), Query Frame = 0
Query:   73 DLRPVVLFDGVCMFCNRGIDTLLALDINRKIRVAPLQSELGRSLMTVCGRDPDDLSSMLVVESDKRLSVKSDAAIRIAEVAAPHPLLGGALEKAAKMLLPQTMRDGAYDQVAENRYSIMGKRDECRL 200
            D RPV+LFDGVC  CN G++  L +D   K+R A LQS  GR+L+   GRDPDD+SS+++VE D    VKSDA +RIA   + +PL   A       ++P  +RD  YD +A+NRY ++G +DECRL
Sbjct:   19 DKRPVILFDGVCNLCNGGVNFALDMDPPGKLRFAALQSTAGRALLRRAGRDPDDISSIVLVEEDAAF-VKSDAVLRIATYFSANPLFPFA--GTLGPVVPTFIRDAFYDAIADNRYDLLGMKDECRL 142          
BLAST of NO11G03250 vs. NCBI_GenBank
Match: CBJ26278.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 114.4 bits (285), Expect = 4.300e-22
Identity = 62/139 (44.60%), Postives = 88/139 (63.31%), Query Frame = 0
Query:   73 DLRPVVLFDGVCMFCNRGIDTLLALDINRKIRVAPLQSELGRSLMTVCGRDPDDLSSMLVVESDKRLSVKSDAAIRIAEVAAPHPLLGG--ALEKAAKMLLPQTMRDGAYDQVAENRYSIMGKRDECRLPDPG-DDRFI 209
            D RPV+L+DGVC  CN  ++  L +D + K R + LQS+ GR+L+ + GR PDD+SS+++VE      ++SDA +R+        LLGG   L     +L+P+ +R+  YD VA+NRYS+MGKRD CR  D    DRFI
Sbjct:   61 DARPVLLYDGVCNMCNGFVNLFLDVDTDEKFRFSALQSQTGRALLALSGRSPDDISSIVLVEQSGAAHIQSDALLRMGR------LLGGPVGLVLLPGVLVPKFVRNKMYDTVADNRYSVMGKRDVCRCSDERYADRFI 193          
BLAST of NO11G03250 vs. NCBI_GenBank
Match: GAX15736.1 (hypothetical protein FisN_3Lh174 [Fistulifera solaris])

HSP 1 Score: 113.2 bits (282), Expect = 9.600e-22
Identity = 60/138 (43.48%), Postives = 85/138 (61.59%), Query Frame = 0
Query:   73 DLRPVVLFDGVCMFCNRGIDTLLALDINRKIRVAPLQSELGRSLMTVCGRDPDDLSSMLVVESDKRLSVKSDAAIRIAEVAAPHPLLGGALEKAAKMLLPQTMRDGAYDQVAENRYSIMGKRDECRLPDPGD--DRFI 209
            D RPV+LFDGVC  CN  ++  L  D + ++R A LQS +GRSL+   GR  DD+SS+++V +D    +KSDA ++I E  +P  L    +    +  +P  +RD  YDQVA+NRY +MGKRD CR     +  DRF+
Sbjct:   23 DQRPVILFDGVCNLCNNAVNLALDWDPHGRLRFAALQSAVGRSLLQTHGRRADDISSIVLVNNDGAY-IKSDAILKITEALSPPFLPTREVAMLGRFFVPAILRDLIYDQVADNRYQLMGKRDVCRFDADNEFADRFV 159          
The following BLAST results are available for this feature:
BLAST of NO11G03250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853346.14.100e-7388.46hypothetical protein NGA_0723100 [Nannochloropsis ... [more]
EWM24881.15.400e-7371.63Putative thiol-disulfide oxidoreductase DCC [Nanno... [more]
GAX79384.13.200e-2546.26hypothetical protein CEUSTIGMA_g6826.t1 [Chlamydom... [more]
OLP91065.11.600e-2447.10DCC family protein, chloroplastic [Symbiodinium mi... [more]
XP_024399173.11.000e-2347.48DCC family protein At1g52590, chloroplastic-like [... [more]
GAX15700.13.900e-2342.50hypothetical protein FisN_3Hh174 [Fistulifera sola... [more]
EJK44712.15.100e-2348.20hypothetical protein THAOC_36727, partial [Thalass... [more]
XP_002503125.11.500e-2248.03predicted protein, partial [Micromonas commoda] >A... [more]
CBJ26278.14.300e-2244.60conserved unknown protein [Ectocarpus siliculosus][more]
GAX15736.19.600e-2243.48hypothetical protein FisN_3Lh174 [Fistulifera sola... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001921NSK001921Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G03250.1NO11G03250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100265g1gene5610Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G03250.1NO11G03250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G03250 ID=NO11G03250|Name=NO11G03250|organism=Nannochloropsis oceanica|type=gene|length=630bp
ATGCGAGCCTTCGTGTACCGTGCTGGCCCGGCGACCTGGATGCGTCGCGC
GGCCACCACTGCAGGCAAGATTACCACTGCGCAATTTAGCACGGCGTCTA
CCTCATCTACAGGCGCTAGTGTGGATGCCACCGCGATACCGCCGCCTCCC
AGGCCAACGATGGACGAGGCCCTGGCTACTTTTAATCGCGTCTTTCCTAT
CGGCACTGCCGGTGCGGACTTGCGGCCCGTCGTCCTGTTTGACGGCGTTT
GTATGTTCTGCAATCGGGGCATCGACACTCTGCTAGCCCTAGATATCAAC
AGGAAGATCCGCGTGGCGCCTTTGCAGAGTGAGCTGGGGCGATCGCTTAT
GACGGTGTGCGGCCGCGATCCTGATGACCTGTCGTCGATGCTGGTGGTGG
AGTCAGACAAGCGCCTTTCGGTCAAATCGGACGCGGCCATTCGCATTGCC
GAGGTCGCGGCACCACATCCTTTGTTGGGTGGGGCGTTGGAGAAGGCAGC
TAAAATGTTATTGCCGCAAACCATGCGCGATGGGGCTTATGACCAAGTGG
CGGAGAATCGGTACTCAATCATGGGCAAACGCGACGAGTGCCGTTTGCCG
GATCCAGGAGATGATCGGTTTATCGCATGA
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protein sequence of NO11G03250.1

>NO11G03250.1-protein ID=NO11G03250.1-protein|Name=NO11G03250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MRAFVYRAGPATWMRRAATTAGKITTAQFSTASTSSTGASVDATAIPPPP
RPTMDEALATFNRVFPIGTAGADLRPVVLFDGVCMFCNRGIDTLLALDIN
RKIRVAPLQSELGRSLMTVCGRDPDDLSSMLVVESDKRLSVKSDAAIRIA
EVAAPHPLLGGALEKAAKMLLPQTMRDGAYDQVAENRYSIMGKRDECRLP
DPGDDRFIA*
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Synonyms
Publications