NO11G03250.1, NO11G03250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03250.1
Unique NameNO11G03250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length630
Alignment locationchr11:1009553..1010182 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1009553..1010182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G03250.1 vs.
Match: EWM24881.1 (Putative thiol-disulfide oxidoreductase DCC [Nannochloropsis gaditana])

HSP 1 Score: 299.7 bits (766), Expect = 7.200e-78
Identity = 161/215 (74.88%), Postives = 180/215 (83.72%), Query Frame = 0 
Query:    1 MRAFVYRAGPATWMRRAATTAGKI---TTAQFSTAS---TSSTGASVDATAIPPPPRPTMDEALATFNRVFPIGTAGADLRPVVLFDGVCMFCNRGIDTLLALDINRKIRVAPLQSELGRSLMTVCGRDPDDLSSMLVVESDKRLSVKSDAAIRIAEVAAPHPLLGGALEKAAKMLLPQTMRDGAYDQVAENRYSIMGKRDECRLPDPGDDRFIA 210
            MRAFV+R+  +T +    T    I   +TA+FSTAS   +SS   S  A + P  PRP+MDEA  TFN+VFP+ TAGADLRPVVLFDGVCMFCNRGIDTLLALD+NRKIRVAPLQSELG +LMTVCGRDPDDLSSMLVVE+DK L  KSDAAIRIAEVAAPHPLLGGALE+AA++LLPQ MRDGAYD VAENRYSI+GKR+ECRLPDPGDDRFIA
Sbjct:   23 MRAFVFRSQVSTKLVSRCTRHRWIPQGSTARFSTASAPSSSSGSGSTGAKSQPESPRPSMDEAQKTFNKVFPVNTAGADLRPVVLFDGVCMFCNRGIDTLLALDVNRKIRVAPLQSELGCALMTVCGRDPDDLSSMLVVEADKSLFSKSDAAIRIAEVAAPHPLLGGALERAARLLLPQEMRDGAYDTVAENRYSILGKREECRLPDPGDDRFIA 237
The following BLAST results are available for this feature:
BLAST of NO11G03250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24881.17.200e-7874.88Putative thiol-disulfide oxidoreductase DCC [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03250NO11G03250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03250.1NO11G03250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03250.1.cds1NO11G03250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03250.1 ID=NO11G03250.1|Name=NO11G03250.1|organism=Nannochloropsis oceanica|type=mRNA|length=630bp
ATGCGAGCCTTCGTGTACCGTGCTGGCCCGGCGACCTGGATGCGTCGCGC
GGCCACCACTGCAGGCAAGATTACCACTGCGCAATTTAGCACGGCGTCTA
CCTCATCTACAGGCGCTAGTGTGGATGCCACCGCGATACCGCCGCCTCCC
AGGCCAACGATGGACGAGGCCCTGGCTACTTTTAATCGCGTCTTTCCTAT
CGGCACTGCCGGTGCGGACTTGCGGCCCGTCGTCCTGTTTGACGGCGTTT
GTATGTTCTGCAATCGGGGCATCGACACTCTGCTAGCCCTAGATATCAAC
AGGAAGATCCGCGTGGCGCCTTTGCAGAGTGAGCTGGGGCGATCGCTTAT
GACGGTGTGCGGCCGCGATCCTGATGACCTGTCGTCGATGCTGGTGGTGG
AGTCAGACAAGCGCCTTTCGGTCAAATCGGACGCGGCCATTCGCATTGCC
GAGGTCGCGGCACCACATCCTTTGTTGGGTGGGGCGTTGGAGAAGGCAGC
TAAAATGTTATTGCCGCAAACCATGCGCGATGGGGCTTATGACCAAGTGG
CGGAGAATCGGTACTCAATCATGGGCAAACGCGACGAGTGCCGTTTGCCG
GATCCAGGAGATGATCGGTTTATCGCATGA
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protein sequence of NO11G03250.1

>NO11G03250.1-protein ID=NO11G03250.1-protein|Name=NO11G03250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MRAFVYRAGPATWMRRAATTAGKITTAQFSTASTSSTGASVDATAIPPPP
RPTMDEALATFNRVFPIGTAGADLRPVVLFDGVCMFCNRGIDTLLALDIN
RKIRVAPLQSELGRSLMTVCGRDPDDLSSMLVVESDKRLSVKSDAAIRIA
EVAAPHPLLGGALEKAAKMLLPQTMRDGAYDQVAENRYSIMGKRDECRLP
DPGDDRFIA*
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mRNA from alignment at chr11:1009553..1010182-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03250.1 ID=NO11G03250.1|Name=NO11G03250.1|organism=Nannochloropsis oceanica|type=mRNA|length=630bp|location=Sequence derived from alignment at chr11:1009553..1010182- (Nannochloropsis oceanica)
ATGCGAGCCTTCGTGTACCGTGCTGGCCCGGCGACCTGGATGCGTCGCGC
GGCCACCACTGCAGGCAAGATTACCACTGCGCAATTTAGCACGGCGTCTA
CCTCATCTACAGGCGCTAGTGTGGATGCCACCGCGATACCGCCGCCTCCC
AGGCCAACGATGGACGAGGCCCTGGCTACTTTTAATCGCGTCTTTCCTAT
CGGCACTGCCGGTGCGGACTTGCGGCCCGTCGTCCTGTTTGACGGCGTTT
GTATGTTCTGCAATCGGGGCATCGACACTCTGCTAGCCCTAGATATCAAC
AGGAAGATCCGCGTGGCGCCTTTGCAGAGTGAGCTGGGGCGATCGCTTAT
GACGGTGTGCGGCCGCGATCCTGATGACCTGTCGTCGATGCTGGTGGTGG
AGTCAGACAAGCGCCTTTCGGTCAAATCGGACGCGGCCATTCGCATTGCC
GAGGTCGCGGCACCACATCCTTTGTTGGGTGGGGCGTTGGAGAAGGCAGC
TAAAATGTTATTGCCGCAAACCATGCGCGATGGGGCTTATGACCAAGTGG
CGGAGAATCGGTACTCAATCATGGGCAAACGCGACGAGTGCCGTTTGCCG
GATCCAGGAGATGATCGGTTTATCGCATGA
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Coding sequence (CDS) from alignment at chr11:1009553..1010182-

>NO11G03250.1 ID=NO11G03250.1|Name=NO11G03250.1|organism=Nannochloropsis oceanica|type=CDS|length=630bp|location=Sequence derived from alignment at chr11:1009553..1010182- (Nannochloropsis oceanica)
ATGCGAGCCTTCGTGTACCGTGCTGGCCCGGCGACCTGGATGCGTCGCGC
GGCCACCACTGCAGGCAAGATTACCACTGCGCAATTTAGCACGGCGTCTA
CCTCATCTACAGGCGCTAGTGTGGATGCCACCGCGATACCGCCGCCTCCC
AGGCCAACGATGGACGAGGCCCTGGCTACTTTTAATCGCGTCTTTCCTAT
CGGCACTGCCGGTGCGGACTTGCGGCCCGTCGTCCTGTTTGACGGCGTTT
GTATGTTCTGCAATCGGGGCATCGACACTCTGCTAGCCCTAGATATCAAC
AGGAAGATCCGCGTGGCGCCTTTGCAGAGTGAGCTGGGGCGATCGCTTAT
GACGGTGTGCGGCCGCGATCCTGATGACCTGTCGTCGATGCTGGTGGTGG
AGTCAGACAAGCGCCTTTCGGTCAAATCGGACGCGGCCATTCGCATTGCC
GAGGTCGCGGCACCACATCCTTTGTTGGGTGGGGCGTTGGAGAAGGCAGC
TAAAATGTTATTGCCGCAAACCATGCGCGATGGGGCTTATGACCAAGTGG
CGGAGAATCGGTACTCAATCATGGGCAAACGCGACGAGTGCCGTTTGCCG
GATCCAGGAGATGATCGGTTTATCGCATGA
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Synonyms
Publications