NO11G03220, NO11G03220 (gene) Nannochloropsis oceanica

Overview
NameNO11G03220
Unique NameNO11G03220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length777
Alignment locationchr11:1004652..1005428 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1004652..1005428 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO11G03220 vs. NCBI_GenBank
Match: EWM24878.1 (hypothetical protein Naga_100265g5 [Nannochloropsis gaditana])

HSP 1 Score: 290.4 bits (742), Expect = 4.300e-75
Identity = 150/207 (72.46%), Postives = 172/207 (83.09%), Query Frame = 0 
Query:    1 MVGLTKRKVQAGSRDSEGGGRTERSLGQSAEDLQKKLYKHYNETSYLNAQWRHSLTRVSLALSAILVFRLYKLRGEELTKTALSSSSYFTFLQANLVEALGVLSGLLIAHYISNPLPLTGGTYVLPWSFYAALLLALLEVGVFYQYVSSNPAYVLHIDATLPVGALFFIFVWGADLMMGRSQRRARQGLEASQRLGQTVAPRQTKVE 208
            MVGLTKRKVQ G RD EGGG TERSLGQ+ E LQK+LY+HYNETS+LN QWRHSLTR+SL LSAIL +R+Y+  G+  T  A +SSS+ +FLQ + VE LGV+SGL IAHYI +PLPLTGG+YVLPWSFYAA L A LE+  FY++V SNP Y LHIDATLPVGALFF+FVWGADLMMGRSQR AR GLEASQRLG+TVAP + K E
Sbjct:    1 MVGLTKRKVQLGRRDFEGGGGTERSLGQNTETLQKQLYRHYNETSHLNVQWRHSLTRISLGLSAILTYRMYRQWGDTSTTNANTSSSWPSFLQMHGVEFLGVISGLAIAHYIHSPLPLTGGSYVLPWSFYAAFLCACLEIFAFYRHVVSNPEYTLHIDATLPVGALFFLFVWGADLMMGRSQREARLGLEASQRLGETVAPHRMKRE 207
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BLAST of NO11G03220 vs. NCBI_GenBank
Match: XP_005853345.1 (hypothetical protein NGA_0723000, partial [Nannochloropsis gaditana CCMP526] >EKU23016.1 hypothetical protein NGA_0723000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 289.3 bits (739), Expect = 9.700e-75
Identity = 149/207 (71.98%), Postives = 172/207 (83.09%), Query Frame = 0 
Query:    1 MVGLTKRKVQAGSRDSEGGGRTERSLGQSAEDLQKKLYKHYNETSYLNAQWRHSLTRVSLALSAILVFRLYKLRGEELTKTALSSSSYFTFLQANLVEALGVLSGLLIAHYISNPLPLTGGTYVLPWSFYAALLLALLEVGVFYQYVSSNPAYVLHIDATLPVGALFFIFVWGADLMMGRSQRRARQGLEASQRLGQTVAPRQTKVE 208
            MVGLTKRKVQ G RD EGGG TERSLGQ+ E LQK+LY+HYNETS+LN QWRHSLTR+SL LSAIL +R+Y+  G+  T  A +SSS+ +FLQ + VE LGV+SGL IAHYI +PLPLTGG+YVLPWSFYAA L A LE+  FY++V SNP Y LHIDATLP+GALFF+FVWGADLMMGRSQR AR GLEASQRLG+TVAP + K E
Sbjct:   41 MVGLTKRKVQLGRRDFEGGGGTERSLGQNTETLQKQLYRHYNETSHLNVQWRHSLTRISLGLSAILTYRMYRQWGDTSTTNANTSSSWPSFLQMHGVEFLGVISGLAIAHYIHSPLPLTGGSYVLPWSFYAAFLCACLEIFAFYRHVVSNPEYTLHIDATLPMGALFFLFVWGADLMMGRSQREARLGLEASQRLGETVAPHRMKRE 247
The following BLAST results are available for this feature:
BLAST of NO11G03220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24878.14.300e-7572.46hypothetical protein Naga_100265g5 [Nannochloropsi... [more]
XP_005853345.19.700e-7571.98hypothetical protein NGA_0723000, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001924NSK001924Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G03220.1NO11G03220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591824gene_5235Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100265g5gene5607Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G03220.1NO11G03220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G03220 ID=NO11G03220|Name=NO11G03220|organism=Nannochloropsis oceanica|type=gene|length=777bp
ATGGTGGGCTTGACCAAGCGCAAGGTTCAAGCGGGTAGTCGAGATTCGGA
AGGTGGCGGTCGCACGGAGAGGAGCCTGGGTCAATCCGCGGAGGATCTCC
AGAAAAAGCTTTACAAGCACTACAACGAGACGAGCTACCTAAACGCACAG
TGGAGAgtacgtacgcactacattcatagcgtggcagcccggctagctaa
ccctctcccttgtgtagtgagcctactgtcatcatatttcattttcatgt
cacccatatccctgtcctaaccgcaccacccttatccctgcctcactctc
acgccacagCACTCCCTCACCCGCGTCTCCCTCGCCCTGTCAGCTATCTT
GGTGTTTCGACTCTACAAATTAAGGGGCGAGGAGCTCACCAAAACAGCAC
TCTCCTCCTCTTCCTACTTCACCTTCCTGCAAGCAAACCTTGTCGAGGCC
TTGGGCGTCCTTTCAGGCCTGCTCATTGCCCACTACATAAGCAACCCCCT
CCCCCTGACAGGAGGAACGTACGTCTTACCATGGTCCTTCTACGCCGCCC
TCCTCCTGGCATTGTTGGAGGTCGGAGTATTCTACCAGTACGTGTCCTCC
AACCCCGCTTACGTCTTGCACATCGACGCTACCTTGCCCGTGGGTGCCTT
GTTTTTCATCTTTGTGTGGGGGGCAGATCTGATGATGGGTCGAAGTCAAC
GGCGCGCGAGACAAGGTCTCGAGGCCAGCCAGCGCCTGGGACAGACAGTG
GCCCCGCGGCAGACTAAGGTCGAATAA
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protein sequence of NO11G03220.1

>NO11G03220.1-protein ID=NO11G03220.1-protein|Name=NO11G03220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MVGLTKRKVQAGSRDSEGGGRTERSLGQSAEDLQKKLYKHYNETSYLNAQ
WRHSLTRVSLALSAILVFRLYKLRGEELTKTALSSSSYFTFLQANLVEAL
GVLSGLLIAHYISNPLPLTGGTYVLPWSFYAALLLALLEVGVFYQYVSSN
PAYVLHIDATLPVGALFFIFVWGADLMMGRSQRRARQGLEASQRLGQTVA
PRQTKVE*
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Synonyms
Publications