NO11G03220.1, NO11G03220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03220.1
Unique NameNO11G03220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length624
Alignment locationchr11:1004652..1005428 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1004652..1005428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G03220.1 vs.
Match: EWM24878.1 (hypothetical protein Naga_100265g5 [Nannochloropsis gaditana])

HSP 1 Score: 290.4 bits (742), Expect = 4.300e-75
Identity = 150/207 (72.46%), Postives = 172/207 (83.09%), Query Frame = 0 
Query:    1 MVGLTKRKVQAGSRDSEGGGRTERSLGQSAEDLQKKLYKHYNETSYLNAQWRHSLTRVSLALSAILVFRLYKLRGEELTKTALSSSSYFTFLQANLVEALGVLSGLLIAHYISNPLPLTGGTYVLPWSFYAALLLALLEVGVFYQYVSSNPAYVLHIDATLPVGALFFIFVWGADLMMGRSQRRARQGLEASQRLGQTVAPRQTKVE 208
            MVGLTKRKVQ G RD EGGG TERSLGQ+ E LQK+LY+HYNETS+LN QWRHSLTR+SL LSAIL +R+Y+  G+  T  A +SSS+ +FLQ + VE LGV+SGL IAHYI +PLPLTGG+YVLPWSFYAA L A LE+  FY++V SNP Y LHIDATLPVGALFF+FVWGADLMMGRSQR AR GLEASQRLG+TVAP + K E
Sbjct:    1 MVGLTKRKVQLGRRDFEGGGGTERSLGQNTETLQKQLYRHYNETSHLNVQWRHSLTRISLGLSAILTYRMYRQWGDTSTTNANTSSSWPSFLQMHGVEFLGVISGLAIAHYIHSPLPLTGGSYVLPWSFYAAFLCACLEIFAFYRHVVSNPEYTLHIDATLPVGALFFLFVWGADLMMGRSQREARLGLEASQRLGETVAPHRMKRE 207
The following BLAST results are available for this feature:
BLAST of NO11G03220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24878.14.300e-7572.46hypothetical protein Naga_100265g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03220NO11G03220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03220.1NO11G03220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03220.1.cds1NO11G03220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03220.1.cds2NO11G03220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03220.1 ID=NO11G03220.1|Name=NO11G03220.1|organism=Nannochloropsis oceanica|type=mRNA|length=624bp
ATGGTGGGCTTGACCAAGCGCAAGGTTCAAGCGGGTAGTCGAGATTCGGA
AGGTGGCGGTCGCACGGAGAGGAGCCTGGGTCAATCCGCGGAGGATCTCC
AGAAAAAGCTTTACAAGCACTACAACGAGACGAGCTACCTAAACGCACAG
TGGAGACACTCCCTCACCCGCGTCTCCCTCGCCCTGTCAGCTATCTTGGT
GTTTCGACTCTACAAATTAAGGGGCGAGGAGCTCACCAAAACAGCACTCT
CCTCCTCTTCCTACTTCACCTTCCTGCAAGCAAACCTTGTCGAGGCCTTG
GGCGTCCTTTCAGGCCTGCTCATTGCCCACTACATAAGCAACCCCCTCCC
CCTGACAGGAGGAACGTACGTCTTACCATGGTCCTTCTACGCCGCCCTCC
TCCTGGCATTGTTGGAGGTCGGAGTATTCTACCAGTACGTGTCCTCCAAC
CCCGCTTACGTCTTGCACATCGACGCTACCTTGCCCGTGGGTGCCTTGTT
TTTCATCTTTGTGTGGGGGGCAGATCTGATGATGGGTCGAAGTCAACGGC
GCGCGAGACAAGGTCTCGAGGCCAGCCAGCGCCTGGGACAGACAGTGGCC
CCGCGGCAGACTAAGGTCGAATAA
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protein sequence of NO11G03220.1

>NO11G03220.1-protein ID=NO11G03220.1-protein|Name=NO11G03220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MVGLTKRKVQAGSRDSEGGGRTERSLGQSAEDLQKKLYKHYNETSYLNAQ
WRHSLTRVSLALSAILVFRLYKLRGEELTKTALSSSSYFTFLQANLVEAL
GVLSGLLIAHYISNPLPLTGGTYVLPWSFYAALLLALLEVGVFYQYVSSN
PAYVLHIDATLPVGALFFIFVWGADLMMGRSQRRARQGLEASQRLGQTVA
PRQTKVE*
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mRNA from alignment at chr11:1004652..1005428+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03220.1 ID=NO11G03220.1|Name=NO11G03220.1|organism=Nannochloropsis oceanica|type=mRNA|length=777bp|location=Sequence derived from alignment at chr11:1004652..1005428+ (Nannochloropsis oceanica)
ATGGTGGGCTTGACCAAGCGCAAGGTTCAAGCGGGTAGTCGAGATTCGGA
AGGTGGCGGTCGCACGGAGAGGAGCCTGGGTCAATCCGCGGAGGATCTCC
AGAAAAAGCTTTACAAGCACTACAACGAGACGAGCTACCTAAACGCACAG
TGGAGAGTACGTACGCACTACATTCATAGCGTGGCAGCCCGGCTAGCTAA
CCCTCTCCCTTGTGTAGTGAGCCTACTGTCATCATATTTCATTTTCATGT
CACCCATATCCCTGTCCTAACCGCACCACCCTTATCCCTGCCTCACTCTC
ACGCCACAGCACTCCCTCACCCGCGTCTCCCTCGCCCTGTCAGCTATCTT
GGTGTTTCGACTCTACAAATTAAGGGGCGAGGAGCTCACCAAAACAGCAC
TCTCCTCCTCTTCCTACTTCACCTTCCTGCAAGCAAACCTTGTCGAGGCC
TTGGGCGTCCTTTCAGGCCTGCTCATTGCCCACTACATAAGCAACCCCCT
CCCCCTGACAGGAGGAACGTACGTCTTACCATGGTCCTTCTACGCCGCCC
TCCTCCTGGCATTGTTGGAGGTCGGAGTATTCTACCAGTACGTGTCCTCC
AACCCCGCTTACGTCTTGCACATCGACGCTACCTTGCCCGTGGGTGCCTT
GTTTTTCATCTTTGTGTGGGGGGCAGATCTGATGATGGGTCGAAGTCAAC
GGCGCGCGAGACAAGGTCTCGAGGCCAGCCAGCGCCTGGGACAGACAGTG
GCCCCGCGGCAGACTAAGGTCGAATAA
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Coding sequence (CDS) from alignment at chr11:1004652..1005428+

>NO11G03220.1 ID=NO11G03220.1|Name=NO11G03220.1|organism=Nannochloropsis oceanica|type=CDS|length=624bp|location=Sequence derived from alignment at chr11:1004652..1005428+ (Nannochloropsis oceanica)
ATGGTGGGCTTGACCAAGCGCAAGGTTCAAGCGGGTAGTCGAGATTCGGA
AGGTGGCGGTCGCACGGAGAGGAGCCTGGGTCAATCCGCGGAGGATCTCC
AGAAAAAGCTTTACAAGCACTACAACGAGACGAGCTACCTAAACGCACAG
TGGAGACACTCCCTCACCCGCGTCTCCCTCGCCCTGTCAGCTATCTTGGT
GTTTCGACTCTACAAATTAAGGGGCGAGGAGCTCACCAAAACAGCACTCT
CCTCCTCTTCCTACTTCACCTTCCTGCAAGCAAACCTTGTCGAGGCCTTG
GGCGTCCTTTCAGGCCTGCTCATTGCCCACTACATAAGCAACCCCCTCCC
CCTGACAGGAGGAACGTACGTCTTACCATGGTCCTTCTACGCCGCCCTCC
TCCTGGCATTGTTGGAGGTCGGAGTATTCTACCAGTACGTGTCCTCCAAC
CCCGCTTACGTCTTGCACATCGACGCTACCTTGCCCGTGGGTGCCTTGTT
TTTCATCTTTGTGTGGGGGGCAGATCTGATGATGGGTCGAAGTCAACGGC
GCGCGAGACAAGGTCTCGAGGCCAGCCAGCGCCTGGGACAGACAGTGGCC
CCGCGGCAGACTAAGGTCGAATAA
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Synonyms
Publications