NO11G03180, NO11G03180 (gene) Nannochloropsis oceanica

Overview
NameNO11G03180
Unique NameNO11G03180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length450
Alignment locationchr11:994147..994596 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:994147..994596 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO11G03180 vs. NCBI_GenBank
Match: EWM24883.1 (hypothetical protein Naga_100265g9 [Nannochloropsis gaditana])

HSP 1 Score: 156.4 bits (394), Expect = 7.100e-35
Identity = 81/137 (59.12%), Postives = 99/137 (72.26%), Query Frame = 0 
Query:   15 HGLGGFVSTHIPTSIAATCFSSI--SXXXXXXXKAPVITLTATPMPLRAELKRRNSHPLRLGPGTSHVIAEDDGETLFHSTTSTKALLLVFAVYALVNGWNGFVAKGGEAAMEAVRELVLLVLLVVGVAPLLDHYFF 150
            HG+GG V T  P  + AT  S +  S       KAP ITLTATPMPLRAELKRRNSHPLRL P   + +  D+ ETL  ++ S KAL++VF +Y L+ GWNGFV KG +AA+EAV++LV+LV+LVVGVAPLLD YFF
Sbjct:   17 HGMGGLVLTKFPIGLVATSISKVSSSALSTSSAKAPQITLTATPMPLRAELKRRNSHPLRLAPRGVNAVDGDEEETLSQTSASLKALIIVFTIYTLIRGWNGFVEKGMDAAVEAVQQLVMLVVLVVGVAPLLDQYFF 153
The following BLAST results are available for this feature:
BLAST of NO11G03180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24883.17.100e-3559.12hypothetical protein Naga_100265g9 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001930NSK001930Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G03180.1NO11G03180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100265g9gene5604Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G03180.1NO11G03180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G03180 ID=NO11G03180|Name=NO11G03180|organism=Nannochloropsis oceanica|type=gene|length=450bp
ATGACCACTACCACCACCACAACCACCACCACCACTGCTTCGCACGGCCT
CGGCGGGTTTGTTTCGACCCACATTCCGACAAGCATAGCCGCTACTTGTT
TTTCCTCCATCTCATCCTCATCCTCTGCCACCACTAAAGCGCCTGTCATC
ACGCTGACGGCCACGCCCATGCCTCTACGGGCTGAGTTAAAAAGGAGGAA
CAGCCACCCTCTCCGCCTCGGTCCCGGGACCTCCCACGTGATCGCCGAGG
ACGACGGAGAGACTCTTTTCCACAGTACTACCAGCACTAAGGCTTTGCTT
TTGGTATTTGCCGTTTATGCGCTGGTGAATGGATGGAATGGCTTTGTGGC
GAAGGGTGGCGAAGCGGCGATGGAGGCCGTGAGGGAGCTGGTGTTGCTCG
TGTTGCTTGTCGTGGGCGTTGCGCCCCTTCTGGACCACTATTTTTTCTAA
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protein sequence of NO11G03180.1

>NO11G03180.1-protein ID=NO11G03180.1-protein|Name=NO11G03180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MTTTTTTTTTTTASHGLGGFVSTHIPTSIAATCFSSISSSSSATTKAPVI
TLTATPMPLRAELKRRNSHPLRLGPGTSHVIAEDDGETLFHSTTSTKALL
LVFAVYALVNGWNGFVAKGGEAAMEAVRELVLLVLLVVGVAPLLDHYFF*
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Synonyms
Publications