NO11G03180.1, NO11G03180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03180.1
Unique NameNO11G03180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length450
Alignment locationchr11:994147..994596 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:994147..994596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G03180.1 vs.
Match: EWM24883.1 (hypothetical protein Naga_100265g9 [Nannochloropsis gaditana])

HSP 1 Score: 153.7 bits (387), Expect = 4.600e-34
Identity = 86/150 (57.33%), Postives = 111/150 (74.00%), Query Frame = 0
Query:    2 TTTTTTTTTTTASHGLGGFVSTHIPTSIAATCFSSISSS--SSATTKAPVITLTATPMPLRAELKRRNSHPLRLGPGTSHVIAEDDGETLFHSTTSTKALLLVFAVYALVNGWNGFVAKGGEAAMEAVRELVLLVLLVVGVAPLLDHYFF 150
            T      T++++ HG+GG V T  P  + AT  S +SSS  S+++ KAP ITLTATPMPLRAELKRRNSHPLRL P   + +  D+ ETL  ++ S KAL++VF +Y L+ GWNGFV KG +AA+EAV++LV+LV+LVVGVAPLLD YFF
Sbjct:    4 TLAAANLTSSSSGHGMGGLVLTKFPIGLVATSISKVSSSALSTSSAKAPQITLTATPMPLRAELKRRNSHPLRLAPRGVNAVDGDEEETLSQTSASLKALIIVFTIYTLIRGWNGFVEKGMDAAVEAVQQLVMLVVLVVGVAPLLDQYFF 153          
The following BLAST results are available for this feature:
BLAST of NO11G03180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24883.14.600e-3457.33hypothetical protein Naga_100265g9 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03180NO11G03180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03180.1NO11G03180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03180.1.cds1NO11G03180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03180.1 ID=NO11G03180.1|Name=NO11G03180.1|organism=Nannochloropsis oceanica|type=mRNA|length=450bp
ATGACCACTACCACCACCACAACCACCACCACCACTGCTTCGCACGGCCT
CGGCGGGTTTGTTTCGACCCACATTCCGACAAGCATAGCCGCTACTTGTT
TTTCCTCCATCTCATCCTCATCCTCTGCCACCACTAAAGCGCCTGTCATC
ACGCTGACGGCCACGCCCATGCCTCTACGGGCTGAGTTAAAAAGGAGGAA
CAGCCACCCTCTCCGCCTCGGTCCCGGGACCTCCCACGTGATCGCCGAGG
ACGACGGAGAGACTCTTTTCCACAGTACTACCAGCACTAAGGCTTTGCTT
TTGGTATTTGCCGTTTATGCGCTGGTGAATGGATGGAATGGCTTTGTGGC
GAAGGGTGGCGAAGCGGCGATGGAGGCCGTGAGGGAGCTGGTGTTGCTCG
TGTTGCTTGTCGTGGGCGTTGCGCCCCTTCTGGACCACTATTTTTTCTAA
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protein sequence of NO11G03180.1

>NO11G03180.1-protein ID=NO11G03180.1-protein|Name=NO11G03180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MTTTTTTTTTTTASHGLGGFVSTHIPTSIAATCFSSISSSSSATTKAPVI
TLTATPMPLRAELKRRNSHPLRLGPGTSHVIAEDDGETLFHSTTSTKALL
LVFAVYALVNGWNGFVAKGGEAAMEAVRELVLLVLLVVGVAPLLDHYFF*
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mRNA from alignment at chr11:994147..994596-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03180.1 ID=NO11G03180.1|Name=NO11G03180.1|organism=Nannochloropsis oceanica|type=mRNA|length=450bp|location=Sequence derived from alignment at chr11:994147..994596- (Nannochloropsis oceanica)
ATGACCACTACCACCACCACAACCACCACCACCACTGCTTCGCACGGCCT CGGCGGGTTTGTTTCGACCCACATTCCGACAAGCATAGCCGCTACTTGTT TTTCCTCCATCTCATCCTCATCCTCTGCCACCACTAAAGCGCCTGTCATC ACGCTGACGGCCACGCCCATGCCTCTACGGGCTGAGTTAAAAAGGAGGAA CAGCCACCCTCTCCGCCTCGGTCCCGGGACCTCCCACGTGATCGCCGAGG ACGACGGAGAGACTCTTTTCCACAGTACTACCAGCACTAAGGCTTTGCTT TTGGTATTTGCCGTTTATGCGCTGGTGAATGGATGGAATGGCTTTGTGGC GAAGGGTGGCGAAGCGGCGATGGAGGCCGTGAGGGAGCTGGTGTTGCTCG TGTTGCTTGTCGTGGGCGTTGCGCCCCTTCTGGACCACTATTTTTTCTAA
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Coding sequence (CDS) from alignment at chr11:994147..994596-

>NO11G03180.1 ID=NO11G03180.1|Name=NO11G03180.1|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at chr11:994147..994596- (Nannochloropsis oceanica)
ATGACCACTACCACCACCACAACCACCACCACCACTGCTTCGCACGGCCT
CGGCGGGTTTGTTTCGACCCACATTCCGACAAGCATAGCCGCTACTTGTT
TTTCCTCCATCTCATCCTCATCCTCTGCCACCACTAAAGCGCCTGTCATC
ACGCTGACGGCCACGCCCATGCCTCTACGGGCTGAGTTAAAAAGGAGGAA
CAGCCACCCTCTCCGCCTCGGTCCCGGGACCTCCCACGTGATCGCCGAGG
ACGACGGAGAGACTCTTTTCCACAGTACTACCAGCACTAAGGCTTTGCTT
TTGGTATTTGCCGTTTATGCGCTGGTGAATGGATGGAATGGCTTTGTGGC
GAAGGGTGGCGAAGCGGCGATGGAGGCCGTGAGGGAGCTGGTGTTGCTCG
TGTTGCTTGTCGTGGGCGTTGCGCCCCTTCTGGACCACTATTTTTTCTAA
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Synonyms
Publications