NO11G03030, NO11G03030 (gene) Nannochloropsis oceanica

Overview
NameNO11G03030
Unique NameNO11G03030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2757
Alignment locationchr11:949288..952044 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:949288..952044 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR036864Zn2-C6_fun-type_DNA-bd_sf
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
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BLAST of NO11G03030 vs. NCBI_GenBank
Match: EWM24903.1 (hypothetical protein Naga_100116g15 [Nannochloropsis gaditana])

HSP 1 Score: 295.8 bits (756), Expect = 3.400e-76
Identity = 162/283 (57.24%), Postives = 195/283 (68.90%), Query Frame = 0 
Query:  242 MTFFIITSFEKLREQGEVDAPKALGLLRSLSLQKQCWNRDFSGGLLDPLLTRLGLPPSHLLRATMGFDWTPGTQARLAELGVKMGEGGREEGTEGVVDFGKIPPRLSALDDRVSACACTVHLHGAACRVLVNQQFKDLFGSASELLERMQNENMAPPLLYALMVAAEDRLDFLEAMTKYLFGRTKEMELSQIVKVRDSIDVAFLAVIRLRVLALAGGAYLATMLSVAPAPSSKYIRGGNWEGPPEGGLTWLGLNKAEEKFRLRPPAPPLTPRGDAGKEFETCN 525
            MT F + SFEK+REQG +D  K L  LR+LSLQ +C+N + +  L++PL T+LGLPP+      M  +        L +LGVK+         EG V FG+IP RLSALDDRVSA ACTV L G ACRVLVN +FKD F SASE+L R+  E   PP L+A +VA EDRLDFLEAMT Y+FG   ++ELSQIVKVRD+ +  FLA+IRLR   LAGGAYLATMLS++PAPSSKYIRGGN EG  E GLTWLGLN+ E K R+RPP+  L P    GK+    N
Sbjct:    1 MTDFFLASFEKVREQGGLDLGKTLSALRTLSLQAECFNLELAHTLVNPLTTQLGLPPAE-WEEVMRREEAVEVPETLEDLGVKL---------EGDVAFGRIPRRLSALDDRVSAVACTVSLVGGACRVLVNDRFKDTFWSASEILSRLSKEVAGPPFLFAALVAVEDRLDFLEAMTAYVFGPPTQVELSQIVKVRDAGEQTFLAMIRLRTATLAGGAYLATMLSISPAPSSKYIRGGNKEGAGEEGLTWLGLNQMEAKARVRPPSAVLAPGQGLGKDTNNHN 273
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BLAST of NO11G03030 vs. NCBI_GenBank
Match: EWM27081.1 (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 102.8 bits (255), Expect = 4.200e-18
Identity = 64/159 (40.25%), Postives = 93/159 (58.49%), Query Frame = 0 
Query:  338 VDFGKIPPRLSALDDRVSACACTVHLHGAACRVLVNQQFKDLFGSASELLERMQNENMAPPLLYALMVAAEDRLDFLEAMTKYLFG-RTKEMELSQIVKVRDSIDVAFLAVIRLRVLALAGGAYLATMLSVAPAPSSKYI------RGGNWEGP-PEGG 489
            +D G + P +++LDD VSA  C V   G   +V  N +FK  F S+ +L +R  +E+  P  +YA ++A EDR +F++++T   FG +T   +++ IVKV D     FLA++RLR L L  G Y A +L+V PAP SKY+       G   EGP  EGG
Sbjct:  217 LDPGVLQPFIASLDDGVSAVICCVGCRGGTGKVYCNDKFKSTFFSSEDLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSDFLAIVRLRCLTLNNGDYGADILTVEPAPMSKYVLQTSDGAGTGQEGPGGEGG 375

HSP 2 Score: 70.5 bits (171), Expect = 2.300e-8
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 0 
Query:   13 RRTCTACRSAKVKCDRVSPICGRCNRLQLPCVEQVRKQGRP 54
            RRTCTAC+++KVKCDR +P+CGRC RL+L CV+Q R QGRP
Sbjct:   25 RRTCTACKASKVKCDRQAPVCGRCARLRLTCVQQPRAQGRP 65
The following BLAST results are available for this feature:
BLAST of NO11G03030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24903.13.400e-7657.24hypothetical protein Naga_100116g15 [Nannochlorops... [more]
EWM27081.14.200e-1840.25Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001947NSK001947Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G03030.1NO11G03030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591741gene_5205Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100116g15gene5588Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G03030.1NO11G03030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G03030 ID=NO11G03030|Name=NO11G03030|organism=Nannochloropsis oceanica|type=gene|length=2757bp
CAGCCACAGGCCCAACAGGTGAGGGTGCGTTGAAGGCTCGGGCACCGGTT
GTCGGCTCCTCACGCTCCTCAGTCGGAGGGCGATCGATCTCGCCTCTAAT
AATTGTTGCCCATGTCCCGACGCATGCAAAAATTTAATGGTGACGGCCGT
CGGACATGCACAGCCTGTCGGAGCGCCAAGgtattggtgtcggattgatg
ggggaggggctggatatgccgtgttgctcgattatggctgcttgtgatga
ggaagatatggccaccacaagggtcatggtaatgcacagggtgtacggtg
tgtgaagtgattgaagtggcagggccacataaaggtgctggctgaacggg
ttgagggtaggacttgtcattgcaaggcgtctactagtacattgaccatg
accaccccttcctatcctccatttctccatacttatggcagGTAAAATGC
GACCGCGTTTCTCCCATTTGTGGCAGgtacatttgtctcaaattgtcccg
tcccttcctccgctttcttccccccccccgttccattccttttttatttt
cagccattttctccccgttcacgcgtacaaattactacatccctccctcc
ctcacaccctccctccctcccactgtcctatccgcgcagATGTAATCGCC
TGCAACTCCCTTGTGTGGAGCAAGTACGGAAACAAGGTCGACCCACTCTC
GCTTCCTACATGCCTGGTTTAAGTGTCGTAGGTAGCGGCGGAGGAGGACA
AAATGGCTCGGTTTTTTTCCCGTTAGCTTCCTCGGTGGTGGAAGGAGGAG
GGGGAGGAGGGAGGGGAGGAAGCATGCCGCCTCATTTTTTGCAGCAGCAG
GGTGGATTCATGAGTGGATCAGGCTTGCAGCAGCACTTGCAGCTAGAGCA
GCAGCACTTACAGCTACGACAGCAGCTACAGCAGGGGCAGCAGCTACAGC
AGGGGCAGCAGCTACAGCAGGGGCAGCAGCTACAGCAGGAGCAGCTACAG
CAGCAGCAGCAGCAGCTACAGCAGCAGCAGCAGCAGCTACAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAAGGGCAATACTCGACGAACGACGACG
ACGACGACGGATATGAGGACGAAAAGCATGGCGGTAGAGGGGGAGGAGGA
ATTGCTTCCGTGCCCTCTCCCTCTCACCATAAGGGTAGTGGGGAAGTTGC
TGAAAGGGGGGGAGAGGGGCTTTCGGTCAGCGAAGACGGCACCATCAGTC
CGCAGATGATGACCTTTTTTATCATTACATCGTTCGAGAAGCTTCGAGAG
CAAGGGGAGGTGGATGCACCCAAGGCACTAGGACTCCTTCGTAGCTTGTC
CTTGCAGAAACAGTGCTGGAATCGTGATTTTTCCGGGGGACTGCTGGACC
CACTTTTGACCCGCCTCGGCCTCCCTCCTTCTCACCTCCTCAGGGCCACC
ATGGGATTTGATTGGACGCCGGGAACACAAGCAAGGCTGGCGGAGCTGGG
GGTTAAGATGGGGGAGGGAGGGAGGGAGGAAGGGACGGAGGGTGTGGTGG
ATTTTGGGAAAATTCCGCCGAGACTGTCGGCGCTGGACGACAGGGTGTCG
GCATGTGCGTGTACAGTGCACCTCCATGGAGCTGCTTGTCGGGTGCTGGT
TAACCAGCAATTCAAGGACTTATTTGGCTCCGCGTCTGAGCTGCTAGAGC
GGATGCAGAACGAGAATATGGCCCCGCCCTTGCTCTACGCCTTGATGGTG
GCCGCGGAAGACAGGCTCGATTTTTTGGAGGCCATGACCAAGTATCTCTT
CGGGCGTACTAAAGAGATGGAGCTCAGCCAAATTGTCAAGGTACGGGATA
GCATCGATGTGGCCTTCTTGGCAGTCATCCGCCTTCGTGTTCTTGCCCTT
GCAGGTGGTGCCTATCTCGCAACCATGCTCTCCGTCGCCCCTGCCCCCTC
CTCGAAGTACATCCGGGGAGGGAATTGGGAGGGTCCACCGGAGGGAGGAT
TGACATGGCTAGGCTTGAATAAAGCGGAGGAAAAATTTAGATTGAGGCCC
CCAGCGCCGCCCCTGACACCCAGGGGTGATGCGGGGAAAGAGTTTGAGAC
CTGTAATGTGGAAATGGCGCGAGTGAGGGAGTTTgtgagtgcgcaacagg
cagctcttggtgccgccgaacgaggaagagatagagggagggatggaggc
atgggacaagggatgggagaaggaagattgatgacgaatccagCGCCTTT
GGTGCCGTCGACTGTGCAGCAACCGCTTTGTGTGCTGCAACACAGTCACC
AGCTACAGCAGCAGCAGCAGCTACAGCAGCAGCAGCAGCAGCTATAGCAG
CAGCAGCTATAGCAGCAGCAGCTACAGCAGCAGCAGCAGCAGCAGCTACA
GCCGCAGCAGAGTCAGCCATTTAAACGACTGTTGGGGACCGAGACGGGGG
GAGGAGGCGTGGGAGGAGGAgtgaatggagagggaaatctgggtcttcgt
ccgctttttcctcctgctcctgccccggctctttcacctcctcctgttcc
ttattatgtagTTTCTACATCTCAGTCCTTGCATTTGTCGAAGAAAGAGC
AGCTAGAGTAGAGCCGACCGCCAGCTCCCGCAACGGCGGTGGCAGCAGCA
GCAGTAGCAGCAGCAACAACAATAGCACCAACAGCAGCAGTGGCAACGGC
AGCAGCTGCTGCAGCACTAGCAACGAAATGCTAAGGTTCCAGCGACAACA
GCAGTAA
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protein sequence of NO11G03030.1

>NO11G03030.1-protein ID=NO11G03030.1-protein|Name=NO11G03030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=674bp
MSRRMQKFNGDGRRTCTACRSAKVKCDRVSPICGRCNRLQLPCVEQVRKQ
GRPTLASYMPGLSVVGSGGGGQNGSVFFPLASSVVEGGGGGGRGGSMPPH
FLQQQGGFMSGSGLQQHLQLEQQHLQLRQQLQQGQQLQQGQQLQQGQQLQ
QEQLQQQQQQLQQQQQQLQQQQQQQQQQQQGQYSTNDDDDDGYEDEKHGG
RGGGGIASVPSPSHHKGSGEVAERGGEGLSVSEDGTISPQMMTFFIITSF
EKLREQGEVDAPKALGLLRSLSLQKQCWNRDFSGGLLDPLLTRLGLPPSH
LLRATMGFDWTPGTQARLAELGVKMGEGGREEGTEGVVDFGKIPPRLSAL
DDRVSACACTVHLHGAACRVLVNQQFKDLFGSASELLERMQNENMAPPLL
YALMVAAEDRLDFLEAMTKYLFGRTKEMELSQIVKVRDSIDVAFLAVIRL
RVLALAGGAYLATMLSVAPAPSSKYIRGGNWEGPPEGGLTWLGLNKAEEK
FRLRPPAPPLTPRGDAGKEFETCNVEMARVREFRLWCRRLCSNRFVCCNT
VTSYSSSSSYSSSSSSYSSSSYSSSSYSSSSSSSYSRSRVSHLNDCWGPR
RGEEAWEEDFYISVLAFVEERAARVEPTASSRNGGGSSSSSSSNNNSTNS
SSGNGSSCCSTSNEMLRFQRQQQ*
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Synonyms
Publications