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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr11 | genome | chr11:949288..952044 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G03030.1 vs.
Match: EWM24903.1 (hypothetical protein Naga_100116g15 [Nannochloropsis gaditana]) HSP 1 Score: 295.8 bits (756), Expect = 3.400e-76 Identity = 162/283 (57.24%), Postives = 195/283 (68.90%), Query Frame = 0
Query: 242 MTFFIITSFEKLREQGEVDAPKALGLLRSLSLQKQCWNRDFSGGLLDPLLTRLGLPPSHLLRATMGFDWTPGTQARLAELGVKMGEGGREEGTEGVVDFGKIPPRLSALDDRVSACACTVHLHGAACRVLVNQQFKDLFGSASELLERMQNENMAPPLLYALMVAAEDRLDFLEAMTKYLFGRTKEMELSQIVKVRDSIDVAFLAVIRLRVLALAGGAYLATMLSVAPAPSSKYIRGGNWEGPPEGGLTWLGLNKAEEKFRLRPPAPPLTPRGDAGKEFETCN 525
MT F + SFEK+REQG +D K L LR+LSLQ +C+N + + L++PL T+LGLPP+ M + L +LGVK+ EG V FG+IP RLSALDDRVSA ACTV L G ACRVLVN +FKD F SASE+L R+ E PP L+A +VA EDRLDFLEAMT Y+FG ++ELSQIVKVRD+ + FLA+IRLR LAGGAYLATMLS++PAPSSKYIRGGN EG E GLTWLGLN+ E K R+RPP+ L P GK+ N
Sbjct: 1 MTDFFLASFEKVREQGGLDLGKTLSALRTLSLQAECFNLELAHTLVNPLTTQLGLPPAEW-EEVMRREEAVEVPETLEDLGVKL---------EGDVAFGRIPRRLSALDDRVSAVACTVSLVGGACRVLVNDRFKDTFWSASEILSRLSKEVAGPPFLFAALVAVEDRLDFLEAMTAYVFGPPTQVELSQIVKVRDAGEQTFLAMIRLRTATLAGGAYLATMLSISPAPSSKYIRGGNKEGAGEEGLTWLGLNQMEAKARVRPPSAVLAPGQGLGKDTNNHN 273
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G03030.1 ID=NO11G03030.1|Name=NO11G03030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2133bp
CAGCCACAGGCCCAACAGGTGAGGGTGCGTTGAAGGCTCGGGCACCGGTT
GTCGGCTCCTCACGCTCCTCAGTCGGAGGGCGATCGATCTCGCCTCTAAT
AATTGTTGCCCATGTCCCGACGCATGCAAAAATTTAATGGTGACGGCCGT
CGGACATGCACAGCCTGTCGGAGCGCCAAGGTAAAATGCGACCGCGTTTC
TCCCATTTGTGGCAGATGTAATCGCCTGCAACTCCCTTGTGTGGAGCAAG
TACGGAAACAAGGTCGACCCACTCTCGCTTCCTACATGCCTGGTTTAAGT
GTCGTAGGTAGCGGCGGAGGAGGACAAAATGGCTCGGTTTTTTTCCCGTT
AGCTTCCTCGGTGGTGGAAGGAGGAGGGGGAGGAGGGAGGGGAGGAAGCA
TGCCGCCTCATTTTTTGCAGCAGCAGGGTGGATTCATGAGTGGATCAGGC
TTGCAGCAGCACTTGCAGCTAGAGCAGCAGCACTTACAGCTACGACAGCA
GCTACAGCAGGGGCAGCAGCTACAGCAGGGGCAGCAGCTACAGCAGGGGC
AGCAGCTACAGCAGGAGCAGCTACAGCAGCAGCAGCAGCAGCTACAGCAG
CAGCAGCAGCAGCTACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
AGGGCAATACTCGACGAACGACGACGACGACGACGGATATGAGGACGAAA
AGCATGGCGGTAGAGGGGGAGGAGGAATTGCTTCCGTGCCCTCTCCCTCT
CACCATAAGGGTAGTGGGGAAGTTGCTGAAAGGGGGGGAGAGGGGCTTTC
GGTCAGCGAAGACGGCACCATCAGTCCGCAGATGATGACCTTTTTTATCA
TTACATCGTTCGAGAAGCTTCGAGAGCAAGGGGAGGTGGATGCACCCAAG
GCACTAGGACTCCTTCGTAGCTTGTCCTTGCAGAAACAGTGCTGGAATCG
TGATTTTTCCGGGGGACTGCTGGACCCACTTTTGACCCGCCTCGGCCTCC
CTCCTTCTCACCTCCTCAGGGCCACCATGGGATTTGATTGGACGCCGGGA
ACACAAGCAAGGCTGGCGGAGCTGGGGGTTAAGATGGGGGAGGGAGGGAG
GGAGGAAGGGACGGAGGGTGTGGTGGATTTTGGGAAAATTCCGCCGAGAC
TGTCGGCGCTGGACGACAGGGTGTCGGCATGTGCGTGTACAGTGCACCTC
CATGGAGCTGCTTGTCGGGTGCTGGTTAACCAGCAATTCAAGGACTTATT
TGGCTCCGCGTCTGAGCTGCTAGAGCGGATGCAGAACGAGAATATGGCCC
CGCCCTTGCTCTACGCCTTGATGGTGGCCGCGGAAGACAGGCTCGATTTT
TTGGAGGCCATGACCAAGTATCTCTTCGGGCGTACTAAAGAGATGGAGCT
CAGCCAAATTGTCAAGGTACGGGATAGCATCGATGTGGCCTTCTTGGCAG
TCATCCGCCTTCGTGTTCTTGCCCTTGCAGGTGGTGCCTATCTCGCAACC
ATGCTCTCCGTCGCCCCTGCCCCCTCCTCGAAGTACATCCGGGGAGGGAA
TTGGGAGGGTCCACCGGAGGGAGGATTGACATGGCTAGGCTTGAATAAAG
CGGAGGAAAAATTTAGATTGAGGCCCCCAGCGCCGCCCCTGACACCCAGG
GGTGATGCGGGGAAAGAGTTTGAGACCTGTAATGTGGAAATGGCGCGAGT
GAGGGAGTTTCGCCTTTGGTGCCGTCGACTGTGCAGCAACCGCTTTGTGT
GCTGCAACACAGTCACCAGCTACAGCAGCAGCAGCAGCTACAGCAGCAGC
AGCAGCAGCTATAGCAGCAGCAGCTATAGCAGCAGCAGCTACAGCAGCAG
CAGCAGCAGCAGCTACAGCCGCAGCAGAGTCAGCCATTTAAACGACTGTT
GGGGACCGAGACGGGGGGAGGAGGCGTGGGAGGAGGATTTCTACATCTCA
GTCCTTGCATTTGTCGAAGAAAGAGCAGCTAGAGTAGAGCCGACCGCCAG
CTCCCGCAACGGCGGTGGCAGCAGCAGCAGTAGCAGCAGCAACAACAATA
GCACCAACAGCAGCAGTGGCAACGGCAGCAGCTGCTGCAGCACTAGCAAC
GAAATGCTAAGGTTCCAGCGACAACAGCAGTAA back to topprotein sequence of NO11G03030.1 >NO11G03030.1-protein ID=NO11G03030.1-protein|Name=NO11G03030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=674bp
MSRRMQKFNGDGRRTCTACRSAKVKCDRVSPICGRCNRLQLPCVEQVRKQ
GRPTLASYMPGLSVVGSGGGGQNGSVFFPLASSVVEGGGGGGRGGSMPPH
FLQQQGGFMSGSGLQQHLQLEQQHLQLRQQLQQGQQLQQGQQLQQGQQLQ
QEQLQQQQQQLQQQQQQLQQQQQQQQQQQQGQYSTNDDDDDGYEDEKHGG
RGGGGIASVPSPSHHKGSGEVAERGGEGLSVSEDGTISPQMMTFFIITSF
EKLREQGEVDAPKALGLLRSLSLQKQCWNRDFSGGLLDPLLTRLGLPPSH
LLRATMGFDWTPGTQARLAELGVKMGEGGREEGTEGVVDFGKIPPRLSAL
DDRVSACACTVHLHGAACRVLVNQQFKDLFGSASELLERMQNENMAPPLL
YALMVAAEDRLDFLEAMTKYLFGRTKEMELSQIVKVRDSIDVAFLAVIRL
RVLALAGGAYLATMLSVAPAPSSKYIRGGNWEGPPEGGLTWLGLNKAEEK
FRLRPPAPPLTPRGDAGKEFETCNVEMARVREFRLWCRRLCSNRFVCCNT
VTSYSSSSSYSSSSSSYSSSSYSSSSYSSSSSSSYSRSRVSHLNDCWGPR
RGEEAWEEDFYISVLAFVEERAARVEPTASSRNGGGSSSSSSSNNNSTNS
SSGNGSSCCSTSNEMLRFQRQQQ* back to topmRNA from alignment at chr11:949288..952044+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G03030.1 ID=NO11G03030.1|Name=NO11G03030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2757bp|location=Sequence derived from alignment at chr11:949288..952044+ (Nannochloropsis oceanica)
CAGCCACAGGCCCAACAGGTGAGGGTGCGTTGAAGGCTCGGGCACCGGTT
GTCGGCTCCTCACGCTCCTCAGTCGGAGGGCGATCGATCTCGCCTCTAAT
AATTGTTGCCCATGTCCCGACGCATGCAAAAATTTAATGGTGACGGCCGT
CGGACATGCACAGCCTGTCGGAGCGCCAAGGTATTGGTGTCGGATTGATG
GGGGAGGGGCTGGATATGCCGTGTTGCTCGATTATGGCTGCTTGTGATGA
GGAAGATATGGCCACCACAAGGGTCATGGTAATGCACAGGGTGTACGGTG
TGTGAAGTGATTGAAGTGGCAGGGCCACATAAAGGTGCTGGCTGAACGGG
TTGAGGGTAGGACTTGTCATTGCAAGGCGTCTACTAGTACATTGACCATG
ACCACCCCTTCCTATCCTCCATTTCTCCATACTTATGGCAGGTAAAATGC
GACCGCGTTTCTCCCATTTGTGGCAGGTACATTTGTCTCAAATTGTCCCG
TCCCTTCCTCCGCTTTCTTCCCCCCCCCCGTTCCATTCCTTTTTTATTTT
CAGCCATTTTCTCCCCGTTCACGCGTACAAATTACTACATCCCTCCCTCC
CTCACACCCTCCCTCCCTCCCACTGTCCTATCCGCGCAGATGTAATCGCC
TGCAACTCCCTTGTGTGGAGCAAGTACGGAAACAAGGTCGACCCACTCTC
GCTTCCTACATGCCTGGTTTAAGTGTCGTAGGTAGCGGCGGAGGAGGACA
AAATGGCTCGGTTTTTTTCCCGTTAGCTTCCTCGGTGGTGGAAGGAGGAG
GGGGAGGAGGGAGGGGAGGAAGCATGCCGCCTCATTTTTTGCAGCAGCAG
GGTGGATTCATGAGTGGATCAGGCTTGCAGCAGCACTTGCAGCTAGAGCA
GCAGCACTTACAGCTACGACAGCAGCTACAGCAGGGGCAGCAGCTACAGC
AGGGGCAGCAGCTACAGCAGGGGCAGCAGCTACAGCAGGAGCAGCTACAG
CAGCAGCAGCAGCAGCTACAGCAGCAGCAGCAGCAGCTACAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAAGGGCAATACTCGACGAACGACGACG
ACGACGACGGATATGAGGACGAAAAGCATGGCGGTAGAGGGGGAGGAGGA
ATTGCTTCCGTGCCCTCTCCCTCTCACCATAAGGGTAGTGGGGAAGTTGC
TGAAAGGGGGGGAGAGGGGCTTTCGGTCAGCGAAGACGGCACCATCAGTC
CGCAGATGATGACCTTTTTTATCATTACATCGTTCGAGAAGCTTCGAGAG
CAAGGGGAGGTGGATGCACCCAAGGCACTAGGACTCCTTCGTAGCTTGTC
CTTGCAGAAACAGTGCTGGAATCGTGATTTTTCCGGGGGACTGCTGGACC
CACTTTTGACCCGCCTCGGCCTCCCTCCTTCTCACCTCCTCAGGGCCACC
ATGGGATTTGATTGGACGCCGGGAACACAAGCAAGGCTGGCGGAGCTGGG
GGTTAAGATGGGGGAGGGAGGGAGGGAGGAAGGGACGGAGGGTGTGGTGG
ATTTTGGGAAAATTCCGCCGAGACTGTCGGCGCTGGACGACAGGGTGTCG
GCATGTGCGTGTACAGTGCACCTCCATGGAGCTGCTTGTCGGGTGCTGGT
TAACCAGCAATTCAAGGACTTATTTGGCTCCGCGTCTGAGCTGCTAGAGC
GGATGCAGAACGAGAATATGGCCCCGCCCTTGCTCTACGCCTTGATGGTG
GCCGCGGAAGACAGGCTCGATTTTTTGGAGGCCATGACCAAGTATCTCTT
CGGGCGTACTAAAGAGATGGAGCTCAGCCAAATTGTCAAGGTACGGGATA
GCATCGATGTGGCCTTCTTGGCAGTCATCCGCCTTCGTGTTCTTGCCCTT
GCAGGTGGTGCCTATCTCGCAACCATGCTCTCCGTCGCCCCTGCCCCCTC
CTCGAAGTACATCCGGGGAGGGAATTGGGAGGGTCCACCGGAGGGAGGAT
TGACATGGCTAGGCTTGAATAAAGCGGAGGAAAAATTTAGATTGAGGCCC
CCAGCGCCGCCCCTGACACCCAGGGGTGATGCGGGGAAAGAGTTTGAGAC
CTGTAATGTGGAAATGGCGCGAGTGAGGGAGTTTGTGAGTGCGCAACAGG
CAGCTCTTGGTGCCGCCGAACGAGGAAGAGATAGAGGGAGGGATGGAGGC
ATGGGACAAGGGATGGGAGAAGGAAGATTGATGACGAATCCAGCGCCTTT
GGTGCCGTCGACTGTGCAGCAACCGCTTTGTGTGCTGCAACACAGTCACC
AGCTACAGCAGCAGCAGCAGCTACAGCAGCAGCAGCAGCAGCTATAGCAG
CAGCAGCTATAGCAGCAGCAGCTACAGCAGCAGCAGCAGCAGCAGCTACA
GCCGCAGCAGAGTCAGCCATTTAAACGACTGTTGGGGACCGAGACGGGGG
GAGGAGGCGTGGGAGGAGGAGTGAATGGAGAGGGAAATCTGGGTCTTCGT
CCGCTTTTTCCTCCTGCTCCTGCCCCGGCTCTTTCACCTCCTCCTGTTCC
TTATTATGTAGTTTCTACATCTCAGTCCTTGCATTTGTCGAAGAAAGAGC
AGCTAGAGTAGAGCCGACCGCCAGCTCCCGCAACGGCGGTGGCAGCAGCA
GCAGTAGCAGCAGCAACAACAATAGCACCAACAGCAGCAGTGGCAACGGC
AGCAGCTGCTGCAGCACTAGCAACGAAATGCTAAGGTTCCAGCGACAACA
GCAGTAA back to topCoding sequence (CDS) from alignment at chr11:949288..952044+ >NO11G03030.1 ID=NO11G03030.1|Name=NO11G03030.1|organism=Nannochloropsis oceanica|type=CDS|length=2022bp|location=Sequence derived from alignment at chr11:949288..952044+ (Nannochloropsis oceanica)
ATGTCCCGACGCATGCAAAAATTTAATGGTGACGGCCGTCGGACATGCAC
AGCCTGTCGGAGCGCCAAGGTAAAATGCGACCGCGTTTCTCCCATTTGTG
GCAGATGTAATCGCCTGCAACTCCCTTGTGTGGAGCAAGTACGGAAACAA
GGTCGACCCACTCTCGCTTCCTACATGCCTGGTTTAAGTGTCGTAGGTAG
CGGCGGAGGAGGACAAAATGGCTCGGTTTTTTTCCCGTTAGCTTCCTCGG
TGGTGGAAGGAGGAGGGGGAGGAGGGAGGGGAGGAAGCATGCCGCCTCAT
TTTTTGCAGCAGCAGGGTGGATTCATGAGTGGATCAGGCTTGCAGCAGCA
CTTGCAGCTAGAGCAGCAGCACTTACAGCTACGACAGCAGCTACAGCAGG
GGCAGCAGCTACAGCAGGGGCAGCAGCTACAGCAGGGGCAGCAGCTACAG
CAGGAGCAGCTACAGCAGCAGCAGCAGCAGCTACAGCAGCAGCAGCAGCA
GCTACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGGGCAATACT
CGACGAACGACGACGACGACGACGGATATGAGGACGAAAAGCATGGCGGT
AGAGGGGGAGGAGGAATTGCTTCCGTGCCCTCTCCCTCTCACCATAAGGG
TAGTGGGGAAGTTGCTGAAAGGGGGGGAGAGGGGCTTTCGGTCAGCGAAG
ACGGCACCATCAGTCCGCAGATGATGACCTTTTTTATCATTACATCGTTC
GAGAAGCTTCGAGAGCAAGGGGAGGTGGATGCACCCAAGGCACTAGGACT
CCTTCGTAGCTTGTCCTTGCAGAAACAGTGCTGGAATCGTGATTTTTCCG
GGGGACTGCTGGACCCACTTTTGACCCGCCTCGGCCTCCCTCCTTCTCAC
CTCCTCAGGGCCACCATGGGATTTGATTGGACGCCGGGAACACAAGCAAG
GCTGGCGGAGCTGGGGGTTAAGATGGGGGAGGGAGGGAGGGAGGAAGGGA
CGGAGGGTGTGGTGGATTTTGGGAAAATTCCGCCGAGACTGTCGGCGCTG
GACGACAGGGTGTCGGCATGTGCGTGTACAGTGCACCTCCATGGAGCTGC
TTGTCGGGTGCTGGTTAACCAGCAATTCAAGGACTTATTTGGCTCCGCGT
CTGAGCTGCTAGAGCGGATGCAGAACGAGAATATGGCCCCGCCCTTGCTC
TACGCCTTGATGGTGGCCGCGGAAGACAGGCTCGATTTTTTGGAGGCCAT
GACCAAGTATCTCTTCGGGCGTACTAAAGAGATGGAGCTCAGCCAAATTG
TCAAGGTACGGGATAGCATCGATGTGGCCTTCTTGGCAGTCATCCGCCTT
CGTGTTCTTGCCCTTGCAGGTGGTGCCTATCTCGCAACCATGCTCTCCGT
CGCCCCTGCCCCCTCCTCGAAGTACATCCGGGGAGGGAATTGGGAGGGTC
CACCGGAGGGAGGATTGACATGGCTAGGCTTGAATAAAGCGGAGGAAAAA
TTTAGATTGAGGCCCCCAGCGCCGCCCCTGACACCCAGGGGTGATGCGGG
GAAAGAGTTTGAGACCTGTAATGTGGAAATGGCGCGAGTGAGGGAGTTTC
GCCTTTGGTGCCGTCGACTGTGCAGCAACCGCTTTGTGTGCTGCAACACA
GTCACCAGCTACAGCAGCAGCAGCAGCTACAGCAGCAGCAGCAGCAGCTA
TAGCAGCAGCAGCTATAGCAGCAGCAGCTACAGCAGCAGCAGCAGCAGCA
GCTACAGCCGCAGCAGAGTCAGCCATTTAAACGACTGTTGGGGACCGAGA
CGGGGGGAGGAGGCGTGGGAGGAGGATTTCTACATCTCAGTCCTTGCATT
TGTCGAAGAAAGAGCAGCTAGAGTAGAGCCGACCGCCAGCTCCCGCAACG
GCGGTGGCAGCAGCAGCAGTAGCAGCAGCAACAACAATAGCACCAACAGC
AGCAGTGGCAACGGCAGCAGCTGCTGCAGCACTAGCAACGAAATGCTAAG
GTTCCAGCGACAACAGCAGTAA back to top
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