NO11G03020, NO11G03020 (gene) Nannochloropsis oceanica

Overview
NameNO11G03020
Unique NameNO11G03020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1911
Alignment locationchr11:947116..949026 -

Link to JBrowse

Properties
Property NameValue
DescriptionOrganic solute transporter Ost-alpha
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:947116..949026 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005178Ostalpha/TMEM184C
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO11G03020 vs. NCBI_GenBank
Match: EWM24892.1 (Organic solute transporter Ost-alpha [Nannochloropsis gaditana])

HSP 1 Score: 354.8 bits (909), Expect = 3.900e-94
Identity = 202/309 (65.37%), Postives = 232/309 (75.08%), Query Frame = 0 
Query:   17 SNITNSTSSTSTSIN------RYSVLWGLALTGFSLTLLVALPYLACLLARPPSKIRRFYLAAVLLPLVFAVSALATCLAPRSDDYWGLLQHVCEAWALHSLNQLIVERLGGKTTTLAKLRARGNQQWLRAPPLCCFCWCLPSTPFTEDTLNLVLALTRQFIFSTPAISLLAVXXXXXXXXXXXXXXXXRQTP---LWHLLRFLLLASSLLALWGLFILYKASLDDVSRQHQITLKFISIKLLIIVGIVQEYVFAELAWRKEGGXXXXXXXXXXXXXVLVPNALLASESPLLTLLVLCAFPLRELEPSF 317
            +N+T S+S  S+S++      RY VL GLAL G  LTLL+ALP++A L  RPPSKIR+FY AA LLP+VFAVSA  TCLAP +++YWGLLQH+ EAWALHSLNQLIVERLGGKT+ LAKL+ARG QQWLRAPPLCC+C+ LPST FTE TL  VL LTRQFI++ P +SLL +                  TP   LWH+LR LLL SSLLALWGLFILYKAS DD+SR HQITLKF+SIKLLIIVGIVQEY+FAEL   +EGG             VLVPNALLASESP LTLL+L AFPLREL+PSF
Sbjct:   29 NNVTFSSSQISSSLSSTHDTKRYYVLLGLALAGLCLTLLLALPHMAWLRVRPPSKIRKFYFAASLLPVVFAVSASITCLAPWTNEYWGLLQHLTEAWALHSLNQLIVERLGGKTSALAKLQARGRQQWLRAPPLCCWCYFLPSTSFTEHTLRSVLTLTRQFIYAAPLLSLLNILLSFTRVP---------TTPPPLLWHVLRLLLLLSSLLALWGLFILYKASHDDLSRHHQITLKFLSIKLLIIVGIVQEYLFAELMDDREGG----REGGKESLAVLVPNALLASESPFLTLLILWAFPLRELDPSF 324
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BLAST of NO11G03020 vs. NCBI_GenBank
Match: OLQ13789.1 (hypothetical protein AK812_SmicGene2150 [Symbiodinium microadriaticum])

HSP 1 Score: 75.5 bits (184), Expect = 4.600e-10
Identity = 83/291 (28.52%), Postives = 123/291 (42.27%), Query Frame = 0 
Query:   36 LWGLALTGFSL--TLLVALPYLACLLARPPSKIRRFYLAAVLLPLVFAVSALATCLAPRSDDYWGLLQHVCEAWALHSLNQLIVERLGGKTTTLAKLRAR------GNQQWLRAPPLCCFCWCLP------STPFTEDTLNLVLALTRQFIFSTPAISLLAVXXXXXXXXXXXXXXXXRQTPLWHLLRFLLLASSLLALWGLFILYKASLDDVSRQHQITLKFISIKLLIIVGIVQEYVFAELAWRKEGGXXXXXXXXXXXXXVLVPNALLASESPLLTLLVLCAFPLREL 313
            L GLA+    L  T ++ L +   L+  P S  R++Y+   L P V A S       P       L+Q + EA ALH     I++ +GG  TT+  L  R      G  +W   PP CC    LP      +T F    L  + A+  Q+ +  P  + +                   Q  L  L++ L   S    L  LF LY+A+  DV  + + T KF+SIKLLI++ ++Q+ +       +  G             V V  A++A+   L   LV  AFPL+EL
Sbjct:   37 LLGLAVASILLAGTTVLCLSHQRELMLAPVSPRRKYYILMHLFPFVVAASCWFQVAVPELAVGTLLVQEIWEALALHYFGLTIIDLMGGPETTVRILAQREPQGMFGRSRWC-VPPCCCAVALLPCAFRDGTTVFNGAALQKMRAMIEQYCYVAPIAASVTTLLDFNTHQRQVHFEGLFQVEL--LMQLLQSISMFCCLQALFTLYRAT-HDVLHRFKTTSKFLSIKLLILLSLIQKTLVVSRMQPRNPG------------IVGVFGAMVATMVDLSEALVNSAFPLKEL 311
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BLAST of NO11G03020 vs. NCBI_GenBank
Match: XP_018667671.1 (PREDICTED: organic solute transporter subunit alpha-like [Ciona intestinalis])

HSP 1 Score: 65.1 bits (157), Expect = 6.200e-7
Identity = 54/194 (27.84%), Postives = 82/194 (42.27%), Query Frame = 0 
Query:   67 RRFYLAAVLLPLVFAVSALATCLAPRSDDYWGLLQHVCEAWALHSLNQLIVERLGGKTTTLAKLRARGNQQWLRAPPLCCFCWCLPSTPFTEDTLNLVLALTRQFIFSTPAISLLAVXXXXXXXXXXXXXXXXRQTPLWHLLRFLLLASSLLALWGLFILYKASLDDVSRQHQITLKFISIKLLIIVGIVQEYV 261
            RR  L    +P VFAVS++  C  P  +     +  V   + LH+L  L+V   GG+T  L +   R  Q      P CC C+CLPS   T+    ++   T Q  F+ P +                            +    L+AS L  +W L I  KAS   + R  + T KF + +L++++  VQ +V
Sbjct:   88 RRLSLLQAGIPTVFAVSSVVGCFFPAGNVMIDFVCSVYFGFGLHALLVLMVNYYGGQTQLLRRFEGRYVQ--TNTGPFCCCCFCLPSFKMTKSNFQVLWYATFQAAFTRPIVLFFEGIIKTDRTIAIPGM----------VYTGCLIASMLSGMWALVIFRKASATFIGR-FRTTAKFFNFQLVLLIANVQPFV 268
The following BLAST results are available for this feature:
BLAST of NO11G03020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM24892.13.900e-9465.37Organic solute transporter Ost-alpha [Nannochlorop... [more]
OLQ13789.14.600e-1028.52hypothetical protein AK812_SmicGene2150 [Symbiodin... [more]
XP_018667671.16.200e-727.84PREDICTED: organic solute transporter subunit alph... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001949NSK001949Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G03020.1NO11G03020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|58673gene_5204Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100116g16gene5587Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G03020.1NO11G03020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G03020 ID=NO11G03020|Name=NO11G03020|organism=Nannochloropsis oceanica|type=gene|length=1911bp
AACCAGACCACTCGTCACACGACGCACGACAGCACATAGACCATCCTCTC
GCTCAGCGTCCGCTCCAGTGTTCGCCGGGCGTTTGTTCGTAATTCTGTCA
TCGCCACACCGCTTCGTCGAACCCACACAAACATCTAAGGCAAGAGCAGT
AGCAGGAGCAAGCTAGCAAAATGGAGGAGGAAGACGAGTGGAGCATCACG
TCCTTAGTCGGGGACGGCAGCAACATCACGAACAGCACCAGCAGCACAAG
CACAAGCATCAACCGCTACTCGGTCCTGTGGGGGTTAGCCTTGACGGGGT
TTAGCCTGACCCTTCTTGTTGCTCTCCCTTACCTGGCATGTCTCTTGGCC
AGGCCCCCATCCAAAATACGAAGATTCTATTTGGCTGCTGTGCTGCTGCC
CTTGGTTTTCGCCGTATCGGCCTTGGCGACTTGCTTGGCCCCGCGTAGTG
ATGATTACTGGGGGTTGCTTCAGCATGTGTGCGAAGCATGGGCATTGCAT
AGTCTAAACCAGgtagcgtacgggacatggaatgaatttgaaattgctgg
tgtgtgcggggtttggagttgggtgtttgcaggaggaagtcgaaccagga
gcagtacaagacaaattgaacatcgctgggagacttttcaatagccctta
tgcggggctattttccctctttgtcgggtgtccagactctcgcattttct
ctttggtcatcaaccttcacccatacatctacacacagCTCATCGTGGAG
CGCCTGGGCGGTAAGACAACCACCCTCGCCAAGCTCCGCGCTCGCGGCAA
TCAGCAATGGTTAAGGGCTCCGCCCCTCTGTTGCTTCTGCTGGTGTCTTC
CTTCCACGCCATTTACCGAGGACACCCTTAACCTAGTCCTGGCCTTGACG
CGTCAGTTTATTTTTAGCACCCCCGCGATTTCCCTCCTCGCCGTCCTCCT
CTCCTTCACCTCTTCCTCCTCCTCTTCCTCCTCCAGCACCGACAGGCAGA
CGCCTCTGTGGCACCTGCTTCGTTTCCTCCTACTCGCTTCCTCCCTCCTG
GCTTTGTGGGGGCTCTTTATCCTCTACAAGGCTTCCTTGGACGATGTCTC
ACGCCAGCATCAGATCACCTTGAAATTCATCTCAATCAAATTGTTGATTA
TCGTGGGGATTGTCCAAGAGTATGTCTTTGCGGAGCTTGCCTGGAGGAAG
GAGGGAGGGGGAAAAGGAGAGGGGCAGGGAGACGGGGAGAGTCTGAGTGT
GCTTGTCCCAAATGCGTTGCTGGCCTCGGAGTCCCCGCTGCTGACGTTGT
TGGTGCTATGTGCTTTTCCGTTGCGCGAGCTAGAGCCGTCTTTCCAACGA
TCGCCACGGCATCATCAGTTGCGGCAGCAGCAGCAGCAGAGCGATTCGTT
CGTATCATATCCTTTCTTGTCGTGGTTGAAGCTGCATAAAGACCATAGGA
CAGGGCGTTCAGTGAGTGCCACCTCACCCTTACTAAGCCTCAGTCGTAGT
GGGGAGAGAGGTAATGGATGGAGGAGGGAAGGAAGGGTGGGAGAAGAGGA
GGAGCCGGAGGAGAAGGAAGAAGAGAAGAAGGAAGAAGATGTAGGGGTTG
GGGAGTTGCTGTTTACGAGTCGAGGGAACAGTTTGCGAGGGAGCCAACGG
TCGCCCACGCCCTTGACGGAGACTGAGGAAGTGGTGTGATAAGCTAAGGA
GAAAAAATGAGACGGGAAAAATGACTGACTTACAATTGAGTGAGAGAAAT
GAAAGAGGAAAAAAATGAAGGATGAAGAAAGGAGTCAGAAAGCGCGGACT
TCGCAAGGTTTCCCTGCAGACTGGAAAGATGCCGAGAAAACATGTACTAT
ACACACGAGAAAAAACAAACATAGGAATGCTAGACAGTAGCGGACAGGGG
CGAACTGCTTG
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protein sequence of NO11G03020.1

>NO11G03020.1-protein ID=NO11G03020.1-protein|Name=NO11G03020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=431bp
MEEEDEWSITSLVGDGSNITNSTSSTSTSINRYSVLWGLALTGFSLTLLV
ALPYLACLLARPPSKIRRFYLAAVLLPLVFAVSALATCLAPRSDDYWGLL
QHVCEAWALHSLNQLIVERLGGKTTTLAKLRARGNQQWLRAPPLCCFCWC
LPSTPFTEDTLNLVLALTRQFIFSTPAISLLAVLLSFTSSSSSSSSSTDR
QTPLWHLLRFLLLASSLLALWGLFILYKASLDDVSRQHQITLKFISIKLL
IIVGIVQEYVFAELAWRKEGGGKGEGQGDGESLSVLVPNALLASESPLLT
LLVLCAFPLRELEPSFQRSPRHHQLRQQQQQSDSFVSYPFLSWLKLHKDH
RTGRSVSATSPLLSLSRSGERGNGWRREGRVGEEEEPEEKEEEKKEEDVG
VGELLFTSRGNSLRGSQRSPTPLTETEEVV*
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Synonyms
Publications