NO11G03020.1, NO11G03020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03020.1
Unique NameNO11G03020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1685
Alignment locationchr11:947116..949026 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:947116..949026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G03020.1 vs.
Match: EWM24892.1 (Organic solute transporter Ost-alpha [Nannochloropsis gaditana])

HSP 1 Score: 373.2 bits (957), Expect = 1.100e-99
Identity = 238/419 (56.80%), Postives = 276/419 (65.87%), Query Frame = 0
Query:   17 SNITNSTSSTSTSIN------RYSVLWGLALTGFSLTLLVALPYLACLLARPPSKIRRFYLAAVLLPLVFAVSALATCLAPRSDDYWGLLQHVCEAWALHSLNQLIVERLGGKTTTLAKLRARGNQQWLRAPPLCCFCWCLPSTPFTEDTLNLVLALTRQFIFSTPAISLLAVLLSFTSSSSSSSSSTDRQTPLWHLLRFLLLASSLLALWGLFILYKASLDDVSRQHQITLKFISIKLLIIVGIVQEYVFAELAWRKEGGGKGEGQGDGESLSVLVPNALLASESPLLTLLVLCAFPLRELEPSFQRSPRHHQLRQQQQQSDSFVSYPFLSWLKLHKDHRTGRSVS---------ATSPLLSLSRSGERGNGWRREGRVGEEEEPEEKEEEKKEEDVGVGELLFTSRGNSLRGSQRSP 421
            +N+T S+S  S+S++      RY VL GLAL G  LTLL+ALP++A L  RPPSKIR+FY AA LLP+VFAVSA  TCLAP +++YWGLLQH+ EAWALHSLNQLIVERLGGKT+ LAKL+ARG QQWLRAPPLCC+C+ LPST FTE TL  VL LTRQFI++ P +SLL +LLSFT         T     LWH+LR LLL SSLLALWGLFILYKAS DD+SR HQITLKF+SIKLLIIVGIVQEY+FAEL   +EGG     +G  ESL+VLVPNALLASESP LTLL+L AFPLREL+PSF    R               S   LS      D   G             A +PL+     GE G G            PE       EE++GVGELLF S+ + L     SP
Sbjct:   29 NNVTFSSSQISSSLSSTHDTKRYYVLLGLALAGLCLTLLLALPHMAWLRVRPPSKIRKFYFAASLLPVVFAVSASITCLAPWTNEYWGLLQHLTEAWALHSLNQLIVERLGGKTSALAKLQARGRQQWLRAPPLCCWCYFLPSTSFTEHTLRSVLTLTRQFIYAAPLLSLLNILLSFT------RVPTTPPPLLWHVLRLLLLLSSLLALWGLFILYKASHDDLSRHHQITLKFLSIKLLIIVGIVQEYLFAELMDDREGG----REGGKESLAVLVPNALLASESPFLTLLILWAFPLRELDPSFGGEARR--------------SLSSLSPGGGRGDGEGGDKPGVIGGKDQPHAATPLMGPRAGGEGGWG---------AMLPE-------EEEIGVGELLFASQDSDLGAITGSP 407          
The following BLAST results are available for this feature:
BLAST of NO11G03020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24892.11.100e-9956.80Organic solute transporter Ost-alpha [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03020NO11G03020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03020.1NO11G03020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03020.1.cds1NO11G03020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03020.1.cds2NO11G03020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03020.1 ID=NO11G03020.1|Name=NO11G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1685bp
AACCAGACCACTCGTCACACGACGCACGACAGCACATAGACCATCCTCTC
GCTCAGCGTCCGCTCCAGTGTTCGCCGGGCGTTTGTTCGTAATTCTGTCA
TCGCCACACCGCTTCGTCGAACCCACACAAACATCTAAGGCAAGAGCAGT
AGCAGGAGCAAGCTAGCAAAATGGAGGAGGAAGACGAGTGGAGCATCACG
TCCTTAGTCGGGGACGGCAGCAACATCACGAACAGCACCAGCAGCACAAG
CACAAGCATCAACCGCTACTCGGTCCTGTGGGGGTTAGCCTTGACGGGGT
TTAGCCTGACCCTTCTTGTTGCTCTCCCTTACCTGGCATGTCTCTTGGCC
AGGCCCCCATCCAAAATACGAAGATTCTATTTGGCTGCTGTGCTGCTGCC
CTTGGTTTTCGCCGTATCGGCCTTGGCGACTTGCTTGGCCCCGCGTAGTG
ATGATTACTGGGGGTTGCTTCAGCATGTGTGCGAAGCATGGGCATTGCAT
AGTCTAAACCAGCTCATCGTGGAGCGCCTGGGCGGTAAGACAACCACCCT
CGCCAAGCTCCGCGCTCGCGGCAATCAGCAATGGTTAAGGGCTCCGCCCC
TCTGTTGCTTCTGCTGGTGTCTTCCTTCCACGCCATTTACCGAGGACACC
CTTAACCTAGTCCTGGCCTTGACGCGTCAGTTTATTTTTAGCACCCCCGC
GATTTCCCTCCTCGCCGTCCTCCTCTCCTTCACCTCTTCCTCCTCCTCTT
CCTCCTCCAGCACCGACAGGCAGACGCCTCTGTGGCACCTGCTTCGTTTC
CTCCTACTCGCTTCCTCCCTCCTGGCTTTGTGGGGGCTCTTTATCCTCTA
CAAGGCTTCCTTGGACGATGTCTCACGCCAGCATCAGATCACCTTGAAAT
TCATCTCAATCAAATTGTTGATTATCGTGGGGATTGTCCAAGAGTATGTC
TTTGCGGAGCTTGCCTGGAGGAAGGAGGGAGGGGGAAAAGGAGAGGGGCA
GGGAGACGGGGAGAGTCTGAGTGTGCTTGTCCCAAATGCGTTGCTGGCCT
CGGAGTCCCCGCTGCTGACGTTGTTGGTGCTATGTGCTTTTCCGTTGCGC
GAGCTAGAGCCGTCTTTCCAACGATCGCCACGGCATCATCAGTTGCGGCA
GCAGCAGCAGCAGAGCGATTCGTTCGTATCATATCCTTTCTTGTCGTGGT
TGAAGCTGCATAAAGACCATAGGACAGGGCGTTCAGTGAGTGCCACCTCA
CCCTTACTAAGCCTCAGTCGTAGTGGGGAGAGAGGTAATGGATGGAGGAG
GGAAGGAAGGGTGGGAGAAGAGGAGGAGCCGGAGGAGAAGGAAGAAGAGA
AGAAGGAAGAAGATGTAGGGGTTGGGGAGTTGCTGTTTACGAGTCGAGGG
AACAGTTTGCGAGGGAGCCAACGGTCGCCCACGCCCTTGACGGAGACTGA
GGAAGTGGTGTGATAAGCTAAGGAGAAAAAATGAGACGGGAAAAATGACT
GACTTACAATTGAGTGAGAGAAATGAAAGAGGAAAAAAATGAAGGATGAA
GAAAGGAGTCAGAAAGCGCGGACTTCGCAAGGTTTCCCTGCAGACTGGAA
AGATGCCGAGAAAACATGTACTATACACACGAGAAAAAACAAACATAGGA
ATGCTAGACAGTAGCGGACAGGGGCGAACTGCTTG
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protein sequence of NO11G03020.1

>NO11G03020.1-protein ID=NO11G03020.1-protein|Name=NO11G03020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=431bp
MEEEDEWSITSLVGDGSNITNSTSSTSTSINRYSVLWGLALTGFSLTLLV
ALPYLACLLARPPSKIRRFYLAAVLLPLVFAVSALATCLAPRSDDYWGLL
QHVCEAWALHSLNQLIVERLGGKTTTLAKLRARGNQQWLRAPPLCCFCWC
LPSTPFTEDTLNLVLALTRQFIFSTPAISLLAVLLSFTSSSSSSSSSTDR
QTPLWHLLRFLLLASSLLALWGLFILYKASLDDVSRQHQITLKFISIKLL
IIVGIVQEYVFAELAWRKEGGGKGEGQGDGESLSVLVPNALLASESPLLT
LLVLCAFPLRELEPSFQRSPRHHQLRQQQQQSDSFVSYPFLSWLKLHKDH
RTGRSVSATSPLLSLSRSGERGNGWRREGRVGEEEEPEEKEEEKKEEDVG
VGELLFTSRGNSLRGSQRSPTPLTETEEVV*
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mRNA from alignment at chr11:947116..949026-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03020.1 ID=NO11G03020.1|Name=NO11G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1911bp|location=Sequence derived from alignment at chr11:947116..949026- (Nannochloropsis oceanica)
AACCAGACCACTCGTCACACGACGCACGACAGCACATAGACCATCCTCTC GCTCAGCGTCCGCTCCAGTGTTCGCCGGGCGTTTGTTCGTAATTCTGTCA TCGCCACACCGCTTCGTCGAACCCACACAAACATCTAAGGCAAGAGCAGT AGCAGGAGCAAGCTAGCAAAATGGAGGAGGAAGACGAGTGGAGCATCACG TCCTTAGTCGGGGACGGCAGCAACATCACGAACAGCACCAGCAGCACAAG CACAAGCATCAACCGCTACTCGGTCCTGTGGGGGTTAGCCTTGACGGGGT TTAGCCTGACCCTTCTTGTTGCTCTCCCTTACCTGGCATGTCTCTTGGCC AGGCCCCCATCCAAAATACGAAGATTCTATTTGGCTGCTGTGCTGCTGCC CTTGGTTTTCGCCGTATCGGCCTTGGCGACTTGCTTGGCCCCGCGTAGTG ATGATTACTGGGGGTTGCTTCAGCATGTGTGCGAAGCATGGGCATTGCAT AGTCTAAACCAGGTAGCGTACGGGACATGGAATGAATTTGAAATTGCTGG TGTGTGCGGGGTTTGGAGTTGGGTGTTTGCAGGAGGAAGTCGAACCAGGA GCAGTACAAGACAAATTGAACATCGCTGGGAGACTTTTCAATAGCCCTTA TGCGGGGCTATTTTCCCTCTTTGTCGGGTGTCCAGACTCTCGCATTTTCT CTTTGGTCATCAACCTTCACCCATACATCTACACACAGCTCATCGTGGAG CGCCTGGGCGGTAAGACAACCACCCTCGCCAAGCTCCGCGCTCGCGGCAA TCAGCAATGGTTAAGGGCTCCGCCCCTCTGTTGCTTCTGCTGGTGTCTTC CTTCCACGCCATTTACCGAGGACACCCTTAACCTAGTCCTGGCCTTGACG CGTCAGTTTATTTTTAGCACCCCCGCGATTTCCCTCCTCGCCGTCCTCCT CTCCTTCACCTCTTCCTCCTCCTCTTCCTCCTCCAGCACCGACAGGCAGA CGCCTCTGTGGCACCTGCTTCGTTTCCTCCTACTCGCTTCCTCCCTCCTG GCTTTGTGGGGGCTCTTTATCCTCTACAAGGCTTCCTTGGACGATGTCTC ACGCCAGCATCAGATCACCTTGAAATTCATCTCAATCAAATTGTTGATTA TCGTGGGGATTGTCCAAGAGTATGTCTTTGCGGAGCTTGCCTGGAGGAAG GAGGGAGGGGGAAAAGGAGAGGGGCAGGGAGACGGGGAGAGTCTGAGTGT GCTTGTCCCAAATGCGTTGCTGGCCTCGGAGTCCCCGCTGCTGACGTTGT TGGTGCTATGTGCTTTTCCGTTGCGCGAGCTAGAGCCGTCTTTCCAACGA TCGCCACGGCATCATCAGTTGCGGCAGCAGCAGCAGCAGAGCGATTCGTT CGTATCATATCCTTTCTTGTCGTGGTTGAAGCTGCATAAAGACCATAGGA CAGGGCGTTCAGTGAGTGCCACCTCACCCTTACTAAGCCTCAGTCGTAGT GGGGAGAGAGGTAATGGATGGAGGAGGGAAGGAAGGGTGGGAGAAGAGGA GGAGCCGGAGGAGAAGGAAGAAGAGAAGAAGGAAGAAGATGTAGGGGTTG GGGAGTTGCTGTTTACGAGTCGAGGGAACAGTTTGCGAGGGAGCCAACGG TCGCCCACGCCCTTGACGGAGACTGAGGAAGTGGTGTGATAAGCTAAGGA GAAAAAATGAGACGGGAAAAATGACTGACTTACAATTGAGTGAGAGAAAT GAAAGAGGAAAAAAATGAAGGATGAAGAAAGGAGTCAGAAAGCGCGGACT TCGCAAGGTTTCCCTGCAGACTGGAAAGATGCCGAGAAAACATGTACTAT ACACACGAGAAAAAACAAACATAGGAATGCTAGACAGTAGCGGACAGGGG CGAACTGCTTG
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Coding sequence (CDS) from alignment at chr11:947116..949026-

>NO11G03020.1 ID=NO11G03020.1|Name=NO11G03020.1|organism=Nannochloropsis oceanica|type=CDS|length=1293bp|location=Sequence derived from alignment at chr11:947116..949026- (Nannochloropsis oceanica)
ATGGAGGAGGAAGACGAGTGGAGCATCACGTCCTTAGTCGGGGACGGCAG
CAACATCACGAACAGCACCAGCAGCACAAGCACAAGCATCAACCGCTACT
CGGTCCTGTGGGGGTTAGCCTTGACGGGGTTTAGCCTGACCCTTCTTGTT
GCTCTCCCTTACCTGGCATGTCTCTTGGCCAGGCCCCCATCCAAAATACG
AAGATTCTATTTGGCTGCTGTGCTGCTGCCCTTGGTTTTCGCCGTATCGG
CCTTGGCGACTTGCTTGGCCCCGCGTAGTGATGATTACTGGGGGTTGCTT
CAGCATGTGTGCGAAGCATGGGCATTGCATAGTCTAAACCAGCTCATCGT
GGAGCGCCTGGGCGGTAAGACAACCACCCTCGCCAAGCTCCGCGCTCGCG
GCAATCAGCAATGGTTAAGGGCTCCGCCCCTCTGTTGCTTCTGCTGGTGT
CTTCCTTCCACGCCATTTACCGAGGACACCCTTAACCTAGTCCTGGCCTT
GACGCGTCAGTTTATTTTTAGCACCCCCGCGATTTCCCTCCTCGCCGTCC
TCCTCTCCTTCACCTCTTCCTCCTCCTCTTCCTCCTCCAGCACCGACAGG
CAGACGCCTCTGTGGCACCTGCTTCGTTTCCTCCTACTCGCTTCCTCCCT
CCTGGCTTTGTGGGGGCTCTTTATCCTCTACAAGGCTTCCTTGGACGATG
TCTCACGCCAGCATCAGATCACCTTGAAATTCATCTCAATCAAATTGTTG
ATTATCGTGGGGATTGTCCAAGAGTATGTCTTTGCGGAGCTTGCCTGGAG
GAAGGAGGGAGGGGGAAAAGGAGAGGGGCAGGGAGACGGGGAGAGTCTGA
GTGTGCTTGTCCCAAATGCGTTGCTGGCCTCGGAGTCCCCGCTGCTGACG
TTGTTGGTGCTATGTGCTTTTCCGTTGCGCGAGCTAGAGCCGTCTTTCCA
ACGATCGCCACGGCATCATCAGTTGCGGCAGCAGCAGCAGCAGAGCGATT
CGTTCGTATCATATCCTTTCTTGTCGTGGTTGAAGCTGCATAAAGACCAT
AGGACAGGGCGTTCAGTGAGTGCCACCTCACCCTTACTAAGCCTCAGTCG
TAGTGGGGAGAGAGGTAATGGATGGAGGAGGGAAGGAAGGGTGGGAGAAG
AGGAGGAGCCGGAGGAGAAGGAAGAAGAGAAGAAGGAAGAAGATGTAGGG
GTTGGGGAGTTGCTGTTTACGAGTCGAGGGAACAGTTTGCGAGGGAGCCA
ACGGTCGCCCACGCCCTTGACGGAGACTGAGGAAGTGGTGTGA
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Synonyms
Publications