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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:947116..949026 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G03020.1 vs.
Match: EWM24892.1 (Organic solute transporter Ost-alpha [Nannochloropsis gaditana]) HSP 1 Score: 373.2 bits (957), Expect = 1.100e-99 Identity = 238/419 (56.80%), Postives = 276/419 (65.87%), Query Frame = 0
Query: 17 SNITNSTSSTSTSIN------RYSVLWGLALTGFSLTLLVALPYLACLLARPPSKIRRFYLAAVLLPLVFAVSALATCLAPRSDDYWGLLQHVCEAWALHSLNQLIVERLGGKTTTLAKLRARGNQQWLRAPPLCCFCWCLPSTPFTEDTLNLVLALTRQFIFSTPAISLLAVLLSFTSSSSSSSSSTDRQTPLWHLLRFLLLASSLLALWGLFILYKASLDDVSRQHQITLKFISIKLLIIVGIVQEYVFAELAWRKEGGGKGEGQGDGESLSVLVPNALLASESPLLTLLVLCAFPLRELEPSFQRSPRHHQLRQQQQQSDSFVSYPFLSWLKLHKDHRTGRSVS---------ATSPLLSLSRSGERGNGWRREGRVGEEEEPEEKEEEKKEEDVGVGELLFTSRGNSLRGSQRSP 421
+N+T S+S S+S++ RY VL GLAL G LTLL+ALP++A L RPPSKIR+FY AA LLP+VFAVSA TCLAP +++YWGLLQH+ EAWALHSLNQLIVERLGGKT+ LAKL+ARG QQWLRAPPLCC+C+ LPST FTE TL VL LTRQFI++ P +SLL +LLSFT T LWH+LR LLL SSLLALWGLFILYKAS DD+SR HQITLKF+SIKLLIIVGIVQEY+FAEL +EGG +G ESL+VLVPNALLASESP LTLL+L AFPLREL+PSF R S LS D G A +PL+ GE G G PE EE++GVGELLF S+ + L SP
Sbjct: 29 NNVTFSSSQISSSLSSTHDTKRYYVLLGLALAGLCLTLLLALPHMAWLRVRPPSKIRKFYFAASLLPVVFAVSASITCLAPWTNEYWGLLQHLTEAWALHSLNQLIVERLGGKTSALAKLQARGRQQWLRAPPLCCWCYFLPSTSFTEHTLRSVLTLTRQFIYAAPLLSLLNILLSFT------RVPTTPPPLLWHVLRLLLLLSSLLALWGLFILYKASHDDLSRHHQITLKFLSIKLLIIVGIVQEYLFAELMDDREGG----REGGKESLAVLVPNALLASESPFLTLLILWAFPLRELDPSFGGEARR--------------SLSSLSPGGGRGDGEGGDKPGVIGGKDQPHAATPLMGPRAGGEGGWG---------AMLPE-------EEEIGVGELLFASQDSDLGAITGSP 407
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G03020.1 ID=NO11G03020.1|Name=NO11G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1685bp AACCAGACCACTCGTCACACGACGCACGACAGCACATAGACCATCCTCTC GCTCAGCGTCCGCTCCAGTGTTCGCCGGGCGTTTGTTCGTAATTCTGTCA TCGCCACACCGCTTCGTCGAACCCACACAAACATCTAAGGCAAGAGCAGT AGCAGGAGCAAGCTAGCAAAATGGAGGAGGAAGACGAGTGGAGCATCACG TCCTTAGTCGGGGACGGCAGCAACATCACGAACAGCACCAGCAGCACAAG CACAAGCATCAACCGCTACTCGGTCCTGTGGGGGTTAGCCTTGACGGGGT TTAGCCTGACCCTTCTTGTTGCTCTCCCTTACCTGGCATGTCTCTTGGCC AGGCCCCCATCCAAAATACGAAGATTCTATTTGGCTGCTGTGCTGCTGCC CTTGGTTTTCGCCGTATCGGCCTTGGCGACTTGCTTGGCCCCGCGTAGTG ATGATTACTGGGGGTTGCTTCAGCATGTGTGCGAAGCATGGGCATTGCAT AGTCTAAACCAGCTCATCGTGGAGCGCCTGGGCGGTAAGACAACCACCCT CGCCAAGCTCCGCGCTCGCGGCAATCAGCAATGGTTAAGGGCTCCGCCCC TCTGTTGCTTCTGCTGGTGTCTTCCTTCCACGCCATTTACCGAGGACACC CTTAACCTAGTCCTGGCCTTGACGCGTCAGTTTATTTTTAGCACCCCCGC GATTTCCCTCCTCGCCGTCCTCCTCTCCTTCACCTCTTCCTCCTCCTCTT CCTCCTCCAGCACCGACAGGCAGACGCCTCTGTGGCACCTGCTTCGTTTC CTCCTACTCGCTTCCTCCCTCCTGGCTTTGTGGGGGCTCTTTATCCTCTA CAAGGCTTCCTTGGACGATGTCTCACGCCAGCATCAGATCACCTTGAAAT TCATCTCAATCAAATTGTTGATTATCGTGGGGATTGTCCAAGAGTATGTC TTTGCGGAGCTTGCCTGGAGGAAGGAGGGAGGGGGAAAAGGAGAGGGGCA GGGAGACGGGGAGAGTCTGAGTGTGCTTGTCCCAAATGCGTTGCTGGCCT CGGAGTCCCCGCTGCTGACGTTGTTGGTGCTATGTGCTTTTCCGTTGCGC GAGCTAGAGCCGTCTTTCCAACGATCGCCACGGCATCATCAGTTGCGGCA GCAGCAGCAGCAGAGCGATTCGTTCGTATCATATCCTTTCTTGTCGTGGT TGAAGCTGCATAAAGACCATAGGACAGGGCGTTCAGTGAGTGCCACCTCA CCCTTACTAAGCCTCAGTCGTAGTGGGGAGAGAGGTAATGGATGGAGGAG GGAAGGAAGGGTGGGAGAAGAGGAGGAGCCGGAGGAGAAGGAAGAAGAGA AGAAGGAAGAAGATGTAGGGGTTGGGGAGTTGCTGTTTACGAGTCGAGGG AACAGTTTGCGAGGGAGCCAACGGTCGCCCACGCCCTTGACGGAGACTGA GGAAGTGGTGTGATAAGCTAAGGAGAAAAAATGAGACGGGAAAAATGACT GACTTACAATTGAGTGAGAGAAATGAAAGAGGAAAAAAATGAAGGATGAA GAAAGGAGTCAGAAAGCGCGGACTTCGCAAGGTTTCCCTGCAGACTGGAA AGATGCCGAGAAAACATGTACTATACACACGAGAAAAAACAAACATAGGA ATGCTAGACAGTAGCGGACAGGGGCGAACTGCTTG back to topprotein sequence of NO11G03020.1 >NO11G03020.1-protein ID=NO11G03020.1-protein|Name=NO11G03020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=431bp MEEEDEWSITSLVGDGSNITNSTSSTSTSINRYSVLWGLALTGFSLTLLV ALPYLACLLARPPSKIRRFYLAAVLLPLVFAVSALATCLAPRSDDYWGLL QHVCEAWALHSLNQLIVERLGGKTTTLAKLRARGNQQWLRAPPLCCFCWC LPSTPFTEDTLNLVLALTRQFIFSTPAISLLAVLLSFTSSSSSSSSSTDR QTPLWHLLRFLLLASSLLALWGLFILYKASLDDVSRQHQITLKFISIKLL IIVGIVQEYVFAELAWRKEGGGKGEGQGDGESLSVLVPNALLASESPLLT LLVLCAFPLRELEPSFQRSPRHHQLRQQQQQSDSFVSYPFLSWLKLHKDH RTGRSVSATSPLLSLSRSGERGNGWRREGRVGEEEEPEEKEEEKKEEDVG VGELLFTSRGNSLRGSQRSPTPLTETEEVV* back to topmRNA from alignment at chr11:947116..949026- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G03020.1 ID=NO11G03020.1|Name=NO11G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1911bp|location=Sequence derived from alignment at chr11:947116..949026- (Nannochloropsis oceanica) AACCAGACCACTCGTCACACGACGCACGACAGCACATAGACCATCCTCTC
GCTCAGCGTCCGCTCCAGTGTTCGCCGGGCGTTTGTTCGTAATTCTGTCA
TCGCCACACCGCTTCGTCGAACCCACACAAACATCTAAGGCAAGAGCAGT
AGCAGGAGCAAGCTAGCAAAATGGAGGAGGAAGACGAGTGGAGCATCACG
TCCTTAGTCGGGGACGGCAGCAACATCACGAACAGCACCAGCAGCACAAG
CACAAGCATCAACCGCTACTCGGTCCTGTGGGGGTTAGCCTTGACGGGGT
TTAGCCTGACCCTTCTTGTTGCTCTCCCTTACCTGGCATGTCTCTTGGCC
AGGCCCCCATCCAAAATACGAAGATTCTATTTGGCTGCTGTGCTGCTGCC
CTTGGTTTTCGCCGTATCGGCCTTGGCGACTTGCTTGGCCCCGCGTAGTG
ATGATTACTGGGGGTTGCTTCAGCATGTGTGCGAAGCATGGGCATTGCAT
AGTCTAAACCAGGTAGCGTACGGGACATGGAATGAATTTGAAATTGCTGG
TGTGTGCGGGGTTTGGAGTTGGGTGTTTGCAGGAGGAAGTCGAACCAGGA
GCAGTACAAGACAAATTGAACATCGCTGGGAGACTTTTCAATAGCCCTTA
TGCGGGGCTATTTTCCCTCTTTGTCGGGTGTCCAGACTCTCGCATTTTCT
CTTTGGTCATCAACCTTCACCCATACATCTACACACAGCTCATCGTGGAG
CGCCTGGGCGGTAAGACAACCACCCTCGCCAAGCTCCGCGCTCGCGGCAA
TCAGCAATGGTTAAGGGCTCCGCCCCTCTGTTGCTTCTGCTGGTGTCTTC
CTTCCACGCCATTTACCGAGGACACCCTTAACCTAGTCCTGGCCTTGACG
CGTCAGTTTATTTTTAGCACCCCCGCGATTTCCCTCCTCGCCGTCCTCCT
CTCCTTCACCTCTTCCTCCTCCTCTTCCTCCTCCAGCACCGACAGGCAGA
CGCCTCTGTGGCACCTGCTTCGTTTCCTCCTACTCGCTTCCTCCCTCCTG
GCTTTGTGGGGGCTCTTTATCCTCTACAAGGCTTCCTTGGACGATGTCTC
ACGCCAGCATCAGATCACCTTGAAATTCATCTCAATCAAATTGTTGATTA
TCGTGGGGATTGTCCAAGAGTATGTCTTTGCGGAGCTTGCCTGGAGGAAG
GAGGGAGGGGGAAAAGGAGAGGGGCAGGGAGACGGGGAGAGTCTGAGTGT
GCTTGTCCCAAATGCGTTGCTGGCCTCGGAGTCCCCGCTGCTGACGTTGT
TGGTGCTATGTGCTTTTCCGTTGCGCGAGCTAGAGCCGTCTTTCCAACGA
TCGCCACGGCATCATCAGTTGCGGCAGCAGCAGCAGCAGAGCGATTCGTT
CGTATCATATCCTTTCTTGTCGTGGTTGAAGCTGCATAAAGACCATAGGA
CAGGGCGTTCAGTGAGTGCCACCTCACCCTTACTAAGCCTCAGTCGTAGT
GGGGAGAGAGGTAATGGATGGAGGAGGGAAGGAAGGGTGGGAGAAGAGGA
GGAGCCGGAGGAGAAGGAAGAAGAGAAGAAGGAAGAAGATGTAGGGGTTG
GGGAGTTGCTGTTTACGAGTCGAGGGAACAGTTTGCGAGGGAGCCAACGG
TCGCCCACGCCCTTGACGGAGACTGAGGAAGTGGTGTGATAAGCTAAGGA
GAAAAAATGAGACGGGAAAAATGACTGACTTACAATTGAGTGAGAGAAAT
GAAAGAGGAAAAAAATGAAGGATGAAGAAAGGAGTCAGAAAGCGCGGACT
TCGCAAGGTTTCCCTGCAGACTGGAAAGATGCCGAGAAAACATGTACTAT
ACACACGAGAAAAAACAAACATAGGAATGCTAGACAGTAGCGGACAGGGG
CGAACTGCTTG back to topCoding sequence (CDS) from alignment at chr11:947116..949026- >NO11G03020.1 ID=NO11G03020.1|Name=NO11G03020.1|organism=Nannochloropsis oceanica|type=CDS|length=1293bp|location=Sequence derived from alignment at chr11:947116..949026- (Nannochloropsis oceanica) ATGGAGGAGGAAGACGAGTGGAGCATCACGTCCTTAGTCGGGGACGGCAG CAACATCACGAACAGCACCAGCAGCACAAGCACAAGCATCAACCGCTACT CGGTCCTGTGGGGGTTAGCCTTGACGGGGTTTAGCCTGACCCTTCTTGTT GCTCTCCCTTACCTGGCATGTCTCTTGGCCAGGCCCCCATCCAAAATACG AAGATTCTATTTGGCTGCTGTGCTGCTGCCCTTGGTTTTCGCCGTATCGG CCTTGGCGACTTGCTTGGCCCCGCGTAGTGATGATTACTGGGGGTTGCTT CAGCATGTGTGCGAAGCATGGGCATTGCATAGTCTAAACCAGCTCATCGT GGAGCGCCTGGGCGGTAAGACAACCACCCTCGCCAAGCTCCGCGCTCGCG GCAATCAGCAATGGTTAAGGGCTCCGCCCCTCTGTTGCTTCTGCTGGTGT CTTCCTTCCACGCCATTTACCGAGGACACCCTTAACCTAGTCCTGGCCTT GACGCGTCAGTTTATTTTTAGCACCCCCGCGATTTCCCTCCTCGCCGTCC TCCTCTCCTTCACCTCTTCCTCCTCCTCTTCCTCCTCCAGCACCGACAGG CAGACGCCTCTGTGGCACCTGCTTCGTTTCCTCCTACTCGCTTCCTCCCT CCTGGCTTTGTGGGGGCTCTTTATCCTCTACAAGGCTTCCTTGGACGATG TCTCACGCCAGCATCAGATCACCTTGAAATTCATCTCAATCAAATTGTTG ATTATCGTGGGGATTGTCCAAGAGTATGTCTTTGCGGAGCTTGCCTGGAG GAAGGAGGGAGGGGGAAAAGGAGAGGGGCAGGGAGACGGGGAGAGTCTGA GTGTGCTTGTCCCAAATGCGTTGCTGGCCTCGGAGTCCCCGCTGCTGACG TTGTTGGTGCTATGTGCTTTTCCGTTGCGCGAGCTAGAGCCGTCTTTCCA ACGATCGCCACGGCATCATCAGTTGCGGCAGCAGCAGCAGCAGAGCGATT CGTTCGTATCATATCCTTTCTTGTCGTGGTTGAAGCTGCATAAAGACCAT AGGACAGGGCGTTCAGTGAGTGCCACCTCACCCTTACTAAGCCTCAGTCG TAGTGGGGAGAGAGGTAATGGATGGAGGAGGGAAGGAAGGGTGGGAGAAG AGGAGGAGCCGGAGGAGAAGGAAGAAGAGAAGAAGGAAGAAGATGTAGGG GTTGGGGAGTTGCTGTTTACGAGTCGAGGGAACAGTTTGCGAGGGAGCCA ACGGTCGCCCACGCCCTTGACGGAGACTGAGGAAGTGGTGTGA back to top
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