NO11G03000, NO11G03000 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO11G03000
Unique Name	NO11G03000
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4920
Alignment location	chr11:940490..945409 -

Link to JBrowse

Properties


Property Name	Value
Description	DNA LIGASE 6

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr11	genome	chr11:940490..945409 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0003677	DNA binding
GO:0003910	DNA ligase (ATP) activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006281	DNA repair
GO:0006310	DNA recombination
GO:0009987	cellular process
GO:0008152	metabolic process
GO:0006259	DNA metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR036599	DNA_ligase_N_sf
IPR012340	NA-bd_OB-fold
IPR012309	DNA_ligase_ATP-dep_C
IPR012310	DNA_ligase_ATP-dep_cent
IPR012308	DNA_ligase_ATP-dep_N

Homology

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BLAST of NO11G03000 vs. NCBI_GenBank
Match: GAQ90890.1 (putative DNA ligase 1 [Klebsormidium nitens])

HSP 1 Score: 595.1 bits (1533), Expect = 3.600e-166
Identity = 319/698 (45.70%), Postives = 422/698 (60.46%), Query Frame = 0

Query:  181 GAASSKATASMTGSPVDLPCARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLMALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMKQLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCEGRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNCCPDIPRIVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTCEFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSSPPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLSTRGR----KDVTAEGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGXXXXXXXXXXXXXXXXXXXATHRETKDPEKVQEFFTEALEAGCEGIMCKSLSHE--YEPSKRTESWLKVKKDYIEGLHDTLDLVPIGAWYGNGRKAGWFSPILLACYNPETEELQSLCRCMSGLTDAMYADTTKFYQSEGRIIDAPKSYVRTGETCPIWFDPCQVWEIRGAELTISPVHKAGVGLVDKQKGMSLRFPRFLKVREDKGVEDATTAAQIAELFRMQIRRVE 873
            GA+ S+ TA      V L  A+Y P    CW+RG+ APYLHLA  FE+L     RL  AD+L NMFRSL+AL+PDD+LPAVYLS+N++A  FE +D+++GGSTV AA+  ATGTS  +M++LY  LGDLGDVA A + +Q  L+ P PL V  VY+ +  ++   G GC  RK+ +++ L+R+CR  E +F+VRTL+ N+R GA +                                                       YN CP++  +V  LVEGG+EA+     VA+GTP+KPMLAKI +GIPE+++++ S+ FT EFKYDGQRAQ+HLL DG+V+IF+R+ +D T K+PDV+  +    R   SS                 I+D ELVAVDR+ GNKL+AFQTLSTR R      +    V + +CVFAFDL+F++GQ+ +KE    RR  +++ F     G                    AT         +Q F  +A  A CEGIM K+L  +  Y  SKR++SWLKVKKDYIEGL+D+LDLVPIGAWYG GRK GWFSP LL CY+P+ EE QS+CRCMSG TD  Y +TT+ Y+ E R +D    Y RT E   +WF P  VWEIRGA+LT+SPVH A  GLV   +G+S+RFPR +K R DK  ED+T  + IAELF  Q R+++
Sbjct: 1196 GASESERTA------VTLSLAKYDPIGHACWTRGEAAPYLHLARTFEILERERGRLKMADILCNMFRSLLALSPDDILPAVYLSTNRVAPDFENVDMSIGGSTVGAAIAEATGTSKAQMRELYNSLGDLGDVALACKQRQATLMAPPPLRVAQVYRALRKISKETGPGCNNRKKNIVLGLLRACREKETQFVVRTLILNMRIGAMM-----------KTVLPALAQAVVIHKSLPSDAPAGPAINGLKSKLQEASAAVVEAYNFCPNLDVLVPTLVEGGIEAVIAQGAVALGTPIKPMLAKITNGIPEVLKRFQSQAFTAEFKYDGQRAQIHLLPDGTVRIFSRNCDDNTAKFPDVIATVKQAARGGCSS----------------FIIDAELVAVDRSAGNKLMAFQTLSTRARGGEKTKIELADVKIAVCVFAFDLMFVDGQALVKESFRERRRRMHAAFPKHSAGHFEFAREATVEEPESDPELEAT------SSLLQTFLQDAFAASCEGIMVKALDKDAGYAASKRSDSWLKVKKDYIEGLNDSLDLVPIGAWYGQGRKVGWFSPFLLGCYDPDREEYQSVCRCMSGFTDVFYKETTQLYR-EQRQLDQKPPYYRTLEQPDVWFRPHDVWEIRGADLTVSPVHAAAAGLVHPTRGISMRFPRMIKTRPDKKPEDSTPPSYIAELFHRQTRKLD 1853

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BLAST of NO11G03000 vs. NCBI_GenBank
Match: OAE24541.1 (hypothetical protein AXG93_2415s1200 [Marchantia polymorpha subsp. ruderalis] >PTQ35706.1 hypothetical protein MARPO_0069s0045 [Marchantia polymorpha])

HSP 1 Score: 572.0 bits (1473), Expect = 3.300e-159
Identity = 301/697 (43.19%), Postives = 418/697 (59.97%), Query Frame = 0

Query:  183 ASSKATASMTGSPVDLPCARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLMALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMKQLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCEGRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNCCPDIPRIVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTCEFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSSPPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLST--RGRKD---VTAEGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGXXXXXXXXXXXXXXXXXXXATHRETKDPEKVQEFFTEALEAGCEGIMCKSL--SHEYEPSKRTESWLKVKKDYIEGLHDTLDLVPIGAWYGNGRKAGWFSPILLACYNPETEELQSLCRCMSGLTDAMYADTTKFYQSEGRIIDAPKSYVRTGETCPIWFDPCQVWEIRGAELTISPVHKAGVGLVDKQKGMSLRFPRFLKVREDKGVEDATTAAQIAELFRMQIRRVE 873
            A+ K TA      V +P  +Y P    CW  G+ APYLHLA AF+L+   + RL  AD+L NMFRSL+AL+PD VLPAVYL++N+LA  FE +D+N+GGS VS AV    G S  K++++YT +GDLGDVAQA R  Q +L +P PL +  V+ T+  ++   G G  GRK+ +++ L+R+CR  E K++VRTLVQN+R GA +                                                       YN  P++  +V  LV+GG+ A+     ++ GTP+KPMLAKI +GIPEL++++  + FTCE+KYDGQRAQ+H+L+DGS +IF+R+ ED T ++PDV     D+ RA             + + L   I+D E+VAVDR   NKL+AFQ LST  RG +D   V  + + V +CVFAFD+++ N +S +K     RR  +   F  +  G                         T   +KV+ F  E   A CEG+M K+L     Y  SKR++SWLK+K+DY+EGL+D+LDLVPIGAWYGNGRKAGW+SP LLACY+PE EE QS+CR MSG TD  Y +  +FY  + RI+    +Y +TGE C +WF P  VWEIRGA+ T+SPVH+A VGL+   +G+S+RFPR+++ R+DK  E +++ + IAELF  Q R+V+
Sbjct:  971 ATKKDTAEKKSGSVAVPVGKYSPIEHACWEPGEGAPYLHLARAFDLVEQESGRLRTADMLCNMFRSLLALSPDAVLPAVYLTTNRLAPDFESVDLNIGGSIVSTAVGEVAGVSRAKLREMYTSMGDLGDVAQACRQTQSILRLPPPLRICQVFSTLKQISKESGGGSGGRKKDLVLSLLRACREKEMKYIVRTLVQNMRIGAMM-----------KTVLSALAQAVVLHHTFPADQAPNEALAKLKPKFQEAAIAVVEAYNFLPNLDLLVPTLVKGGVAALSANISISPGTPIKPMLAKITNGIPELLKRFEGQSFTCEYKYDGQRAQIHMLADGSFRIFSRNCEDTTGRFPDVA----DICRA------------AAREDLTSFIIDAEVVAVDREHDNKLMAFQHLSTRERGSRDGGSVNLQNIKVSVCVFAFDMMYANQESLVKMTFRERRKCMRHWFPNIKPGHFGYATEITIEPEDDQSD------STSTSQKVEGFLEETFAASCEGLMAKALDVDSNYMASKRSDSWLKIKRDYMEGLNDSLDLVPIGAWYGNGRKAGWYSPFLLACYDPEREEYQSVCRVMSGFTDVFYKEMKEFYSGD-RILPKKPTYYQTGEECNVWFTPELVWEIRGADFTVSPVHQAAVGLIHPSRGISMRFPRYIRSRQDKNPEISSSPSDIAELFHQQTRKVD 1633

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BLAST of NO11G03000 vs. NCBI_GenBank
Match: PTQ35705.1 (hypothetical protein MARPO_0069s0045 [Marchantia polymorpha])

HSP 1 Score: 572.0 bits (1473), Expect = 3.300e-159
Identity = 301/697 (43.19%), Postives = 418/697 (59.97%), Query Frame = 0

Query:  183 ASSKATASMTGSPVDLPCARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLMALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMKQLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCEGRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNCCPDIPRIVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTCEFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSSPPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLST--RGRKD---VTAEGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGXXXXXXXXXXXXXXXXXXXATHRETKDPEKVQEFFTEALEAGCEGIMCKSL--SHEYEPSKRTESWLKVKKDYIEGLHDTLDLVPIGAWYGNGRKAGWFSPILLACYNPETEELQSLCRCMSGLTDAMYADTTKFYQSEGRIIDAPKSYVRTGETCPIWFDPCQVWEIRGAELTISPVHKAGVGLVDKQKGMSLRFPRFLKVREDKGVEDATTAAQIAELFRMQIRRVE 873
            A+ K TA      V +P  +Y P    CW  G+ APYLHLA AF+L+   + RL  AD+L NMFRSL+AL+PD VLPAVYL++N+LA  FE +D+N+GGS VS AV    G S  K++++YT +GDLGDVAQA R  Q +L +P PL +  V+ T+  ++   G G  GRK+ +++ L+R+CR  E K++VRTLVQN+R GA +                                                       YN  P++  +V  LV+GG+ A+     ++ GTP+KPMLAKI +GIPEL++++  + FTCE+KYDGQRAQ+H+L+DGS +IF+R+ ED T ++PDV     D+ RA             + + L   I+D E+VAVDR   NKL+AFQ LST  RG +D   V  + + V +CVFAFD+++ N +S +K     RR  +   F  +  G                         T   +KV+ F  E   A CEG+M K+L     Y  SKR++SWLK+K+DY+EGL+D+LDLVPIGAWYGNGRKAGW+SP LLACY+PE EE QS+CR MSG TD  Y +  +FY  + RI+    +Y +TGE C +WF P  VWEIRGA+ T+SPVH+A VGL+   +G+S+RFPR+++ R+DK  E +++ + IAELF  Q R+V+
Sbjct:  706 ATKKDTAEKKSGSVAVPVGKYSPIEHACWEPGEGAPYLHLARAFDLVEQESGRLRTADMLCNMFRSLLALSPDAVLPAVYLTTNRLAPDFESVDLNIGGSIVSTAVGEVAGVSRAKLREMYTSMGDLGDVAQACRQTQSILRLPPPLRICQVFSTLKQISKESGGGSGGRKKDLVLSLLRACREKEMKYIVRTLVQNMRIGAMM-----------KTVLSALAQAVVLHHTFPADQAPNEALAKLKPKFQEAAIAVVEAYNFLPNLDLLVPTLVKGGVAALSANISISPGTPIKPMLAKITNGIPELLKRFEGQSFTCEYKYDGQRAQIHMLADGSFRIFSRNCEDTTGRFPDVA----DICRA------------AAREDLTSFIIDAEVVAVDREHDNKLMAFQHLSTRERGSRDGGSVNLQNIKVSVCVFAFDMMYANQESLVKMTFRERRKCMRHWFPNIKPGHFGYATEITIEPEDDQSD------STSTSQKVEGFLEETFAASCEGLMAKALDVDSNYMASKRSDSWLKIKRDYMEGLNDSLDLVPIGAWYGNGRKAGWYSPFLLACYDPEREEYQSVCRVMSGFTDVFYKEMKEFYSGD-RILPKKPTYYQTGEECNVWFTPELVWEIRGADFTVSPVHQAAVGLIHPSRGISMRFPRYIRSRQDKNPEISSSPSDIAELFHQQTRKVD 1368

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BLAST of NO11G03000 vs. NCBI_GenBank
Match: XP_017218765.1 (PREDICTED: DNA ligase 6 isoform X1 [Daucus carota subsp. sativus])

HSP 1 Score: 547.0 bits (1408), Expect = 1.100e-151
Identity = 287/683 (42.02%), Postives = 405/683 (59.30%), Query Frame = 0

Query:  196 VDLPCARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLMALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMKQLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCEGRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNCCPDIPRIVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTCEFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSSPPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLST--RGRKD--VTAEGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGXXXXXXXXXXXXXXXXXXXATHRETKDPEKVQEFFTEALEAGCEGIMCKSLSHE--YEPSKRTESWLKVKKDYIEGLHDTLDLVPIGAWYGNGRKAGWFSPILLACYNPETEELQSLCRCMSGLTDAMYADTTKFYQSEGRIIDAPKSYVRTGETCPIWFDPCQVWEIRGAELTISPVHKAGVGLVDKQKGMSLRFPRFLKVREDKGVEDATTAAQIAELFRMQIRRVE 873
            V LP   Y P    CW  GQ APYLHLA  F+L+     ++    +L NMFRSL+AL+P+DVLPAVYL +NK+A   E +++N+GGS + +A+    G +  K++ +Y  LGDLGDVAQ  R  Q LL  P PL++RGV+Q +  ++   G G   RK+ +++ L+RSCR  E K+LVRTLV+NLR GA +                                                       YN  P++  ++ +L++ G++   T   +  GTP+KPMLAKI +GIP++++ +  + F+CE+KYDGQRAQ+H L DGSV++F+R+ ++ T ++PD+V ++ +   +  SS                 +LD E+VAVDR  G KL++FQ LS+  RG KD  +  + + V ICVFAFD++F NG+  L   L  R+T L  LF      G                   A     +   K+  F  +AL + CEGIM KSL  E  Y PSKR+++WLKVK+DY+EGL+DTLDLVPIGAW+GNGRKAGW+SP L+ACYNP+ EE QS+CR MSG +D  Y +  +FY SE +I+D    Y +TGE   +WF+P  VWEIRGAE +ISPVH A +GLV   +G+S+RFPRF++ R D+  E+ +TA  IAE+F  Q R+++
Sbjct:  753 VSLPPQDYSPIEHACWKGGQPAPYLHLARTFDLVEEEKGKIKATLMLCNMFRSLLALSPEDVLPAVYLCTNKIAPDHENMELNIGGSIIVSALEETCGANKSKIRTMYNNLGDLGDVAQLCRQTQSLLATPAPLSIRGVFQALHKISIQTGNGSTSRKKGLIMNLMRSCREKEMKYLVRTLVRNLRIGAMM----------------RTVLPALAQAVAMSSSPAERSTENTKQQYQALSAVVLEAYNVLPNLDLLIPSLMDHGIKFSSTTLSMVPGTPIKPMLAKITNGIPQVLKLFSCKAFSCEYKYDGQRAQIHKLGDGSVRVFSRNGDETTSRFPDLVNIIKESCSSEASS----------------FVLDAEVVAVDRKNGCKLMSFQELSSRERGGKDSLIAVDNIKVDICVFAFDIMFANGEQLLSIPLRQRQTYLKKLF------GNERAGYFEYARGLIVEADDAVMTNDETLTKMNSFLDDALRSSCEGIMVKSLDVEAGYTPSKRSDTWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLVACYNPDLEEFQSVCRVMSGFSDPFYIEMKEFY-SEDKILDKKPPYYQTGEKPDMWFNPELVWEIRGAEFSISPVHHAAIGLVHPSRGLSIRFPRFVRSRPDRKPEECSTAMDIAEMFNSQTRKMD 1396

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BLAST of NO11G03000 vs. NCBI_GenBank
Match: XP_016560814.1 (PREDICTED: DNA ligase 1 isoform X1 [Capsicum annuum])

HSP 1 Score: 546.2 bits (1406), Expect = 1.900e-151
Identity = 288/683 (42.17%), Postives = 404/683 (59.15%), Query Frame = 0

Query:  196 VDLPCARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLMALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMKQLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCEGRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNCCPDIPRIVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTCEFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSSPPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLSTRGRKD----VTAEGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGXXXXXXXXXXXXXXXXXXXATHRETKDPEKVQEFFTEALEAGCEGIMCKSLSHE--YEPSKRTESWLKVKKDYIEGLHDTLDLVPIGAWYGNGRKAGWFSPILLACYNPETEELQSLCRCMSGLTDAMYADTTKFYQSEGRIIDAPKSYVRTGETCPIWFDPCQVWEIRGAELTISPVHKAGVGLVDKQKGMSLRFPRFLKVREDKGVEDATTAAQIAELFRMQIRRVE 873
            V LP  +Y P    CWS+GQ APY+HLA  FEL+     ++    +L NMFRSL+AL+P+DVLPAVYL +NK+A   E +++N+GGSTV AA+  A GT   ++++LY  LGDLGDVAQ  R  Q LL  P  LTVRGVY  +  ++   G G   RK+ ++V+L+ SCR  E KFLVRTLV+NLR GA +                                                       YN  P +  +V +L+E G+E    +  +A G P+KPMLAKI +G+P++++ + ++ FTCE+KYDGQRAQ+H L+DGSV++F+R+ ++ T ++PD+V ++ +      S  P            V  ILD E+VA+DR  G+KL++FQ LS+R R      +  + + V IC+F FD++F NG+  L   L  RR  L  LF     G                    AT        ++  F  +AL + CEGIM KSL  +  Y PSKR+++WLKVK+DY+EGL+D+LDLVPIGAWYGNGRKAGW+SP L+ACYNP+TEE QS+CR MSG +D+ Y +   F+ ++ +I      Y RT E   +WF P  VWEIRGA+ T+SPVH A +GLV   +G+S+RFPRF++   D+  E+ +T+A IAE+F  Q R+++
Sbjct:  775 VSLPPEKYSPVEHACWSKGQAAPYIHLARTFELVKEEKGKIKATSMLCNMFRSLLALSPEDVLPAVYLCTNKIAPDHENMELNIGGSTVVAALEEACGTKKSRVRELYNSLGDLGDVAQLCRQTQSLLAPPVALTVRGVYSALRRISLQAGSGSAIRKKSLIVKLMCSCREKEMKFLVRTLVRNLRIGAMM----------------RTVLPALAQAVVFNSIPHEGLVDNLKDCLQRLSAEAVEAYNILPSLDVLVPSLMEKGVEFSSNSLSMAPGIPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLADGSVRVFSRNGDETTSRFPDLVNIITE------SCGPRG----------VTFILDAEVVAIDRQNGSKLMSFQELSSRERGSKGSIIALDKIKVDICIFVFDIMFANGEQLLNLPLRQRRKYLKDLFGDGKVGYFEYATEMTVEDNDSCADDEAT------LARMNSFLNDALNSSCEGIMVKSLDLDAGYTPSKRSDAWLKVKRDYVEGLNDSLDLVPIGAWYGNGRKAGWYSPFLMACYNPDTEEYQSVCRVMSGFSDSFYVEMRDFFDAD-KISQKKPPYYRTAEAPDMWFSPEVVWEIRGADFTVSPVHHAAIGLVHPSRGISVRFPRFIRCLSDRKPEECSTSADIAEMFHSQTRKMD 1418

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BLAST of NO11G03000 vs. NCBI_GenBank
Match: XP_006430691.1 (DNA ligase 6 isoform X1 [Citrus clementina] >ESR43931.1 hypothetical protein CICLE_v10010910mg [Citrus clementina])

HSP 1 Score: 545.4 bits (1404), Expect = 3.300e-151
Identity = 284/683 (41.58%), Postives = 405/683 (59.30%), Query Frame = 0

Query:  196 VDLPCARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLMALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMKQLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCEGRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNCCPDIPRIVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTCEFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSSPPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLST--RGRKD--VTAEGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGXXXXXXXXXXXXXXXXXXXATHRETKDPEKVQEFFTEALEAGCEGIMCKSLSHE--YEPSKRTESWLKVKKDYIEGLHDTLDLVPIGAWYGNGRKAGWFSPILLACYNPETEELQSLCRCMSGLTDAMYADTTKFYQSEGRIIDAPKSYVRTGETCPIWFDPCQVWEIRGAELTISPVHKAGVGLVDKQKGMSLRFPRFLKVREDKGVEDATTAAQIAELFRMQIRRVE 873
            V LP  +Y P    CWS GQ APY+HLA  F+L+ +   ++    +L NMFRSL+AL+PDDVLPAVYL +NK+AS+ E I++N+GGS V++A+  A GT+  K++ +Y  LGDLGDVAQ  R  Q LL  P PL ++ VY  +  ++   G G   RK+ ++V L+ SCR  E KFLVRTLV+NLR GA +                                                       YN  P +  ++ +L+  G+    +   +  G P+KPMLAKI +G+P++++ + ++ FTCE+KYDGQRAQ+H L DG+V+IF+R+ ++ T ++PD++ ++++  +    +                 ILD E+VA+DR  G K+++FQ LS+  RG KD  +T + V V ICVF FD++F NG+  L   L  RR  L  LF     G                     T        K+  F  EAL + CEGI+ KSL  +  Y PSKR++SWLKVK+DY+EGL+D+LDLVPIGAW+GNGRKAGW+SP L+ACYNPETEE QS+CR MSG +D+ Y +  +F+  +  ++  P SY RT E   +WF P  VWEIRGA+ TISPVH+A +GLV   +G+S+RFPRF+++  D+  ++ +TAA IAE+F  Q R+++
Sbjct:  751 VSLPPEKYDPIEHACWSSGQPAPYIHLARTFDLVEAERGKIKAMSMLCNMFRSLLALSPDDVLPAVYLCTNKIASNHENIELNIGGSLVTSAIEEACGTNRSKIRDMYNRLGDLGDVAQECRQTQALLAPPPPLLIKDVYSMLCKISVQTGSGSTARKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMM-------------RTILPALAQAVVMNSSLEFSHEGKMENLKEKLQSLSAAAVEAYNILPSLDLLIPSLMNKGIGFSSSTLSMVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDETTSRFPDLISIINEFCKPAAGT----------------FILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITIKSVKVDICVFVFDIMFANGEQLLGYTLRQRRKYLKDLFYDEKMGYFQYAKEMTVEADDNCLTSDVT------LTKINNFLEEALHSSCEGIIVKSLDVDAGYSPSKRSDSWLKVKRDYVEGLNDSLDLVPIGAWHGNGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDSFYIEMKEFFSGDKILLKKP-SYYRTAEVPDMWFSPEVVWEIRGADFTISPVHQAAIGLVHPSRGISIRFPRFIRLVSDRNPDECSTAADIAEMFHSQTRKMD 1397

[Close]

BLAST of NO11G03000 vs. NCBI_GenBank
Match: XP_006357803.1 (PREDICTED: DNA ligase 1 isoform X1 [Solanum tuberosum])

HSP 1 Score: 544.3 bits (1401), Expect = 7.300e-151
Identity = 288/683 (42.17%), Postives = 402/683 (58.86%), Query Frame = 0

Query:  196 VDLPCARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLMALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMKQLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCEGRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNCCPDIPRIVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTCEFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSSPPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLST--RGRKD--VTAEGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGXXXXXXXXXXXXXXXXXXXATHRETKDPEKVQEFFTEALEAGCEGIMCKSLSHE--YEPSKRTESWLKVKKDYIEGLHDTLDLVPIGAWYGNGRKAGWFSPILLACYNPETEELQSLCRCMSGLTDAMYADTTKFYQSEGRIIDAPKSYVRTGETCPIWFDPCQVWEIRGAELTISPVHKAGVGLVDKQKGMSLRFPRFLKVREDKGVEDATTAAQIAELFRMQIRRVE 873
            V LP  +Y P    CWS+GQ APY+HLA  FEL+     ++    +L NMFRSL+AL+P+DVLPAVYL +NK+A   E +++N+GGSTV AA+  A GT   K+++LY  LGDLGDVAQ  R  Q LL  P  LTVRGVY  +  ++   G G   RK+ ++V L+ SCR  E KFLVRTLV+NLR GA +                                                       YN  P +  +V +L+E G+E       +A G P+KPMLAKI +G+P++M+ + ++ FTCE+KYDGQRAQ+H LSDGSV++F+R+ ++ T ++PD+V ++ +                  +      ILD E+VA+DR  G KL++FQ LS+  RG KD  +  + + V+IC+F FD++F NG+  L   L  RR  L  LF      G                   A   +     ++  F   AL A CEGIM KSL  +  Y PSKR+++WLKVK+DY+EGL+D+LDLVPIGAW+GNGRKAGW+SP L+ACYNP+TEE QS+CR MSG +D+ Y +   F+ ++ +I      Y R+ E   +WF P  VW IRGA+ T+SPVH A +GLV   +G+S+RFPRF++   D+  E+ +T+A IA++FR QIR+++
Sbjct:  793 VSLPHEKYSPVEHACWSKGQAAPYIHLARTFELVKEEKGKIKATSMLCNMFRSLLALSPEDVLPAVYLCTNKIAPDHENMELNIGGSTVVAALEEACGTKKSKVRELYNSLGDLGDVAQLCRQTQSLLAPPVALTVRGVYSALRRISLQAGSGSAIRKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMM----------------RTVLPALAQAVVFNSTPYEGLVENLKDCLQRLSAEVVEAYNILPSLDVLVPSLMEKGIEFSSNTLSMAPGIPIKPMLAKITNGVPQVMKLFHNKAFTCEYKYDGQRAQIHKLSDGSVRVFSRNGDETTSRFPDLVNIITE----------------SCDSRGATFILDAEVVAIDRQNGPKLMSFQELSSRERGSKDSIIALDKIKVEICIFVFDIMFANGEQLLNLPLRQRRKYLKDLF------GDGKVGYLEYATEMTVECDDACADDEATLARMNSFLNAALHASCEGIMVKSLDEDAGYTPSKRSDAWLKVKRDYVEGLNDSLDLVPIGAWHGNGRKAGWYSPFLMACYNPDTEEFQSVCRVMSGFSDSFYVEMRDFFDAD-KICQKKPPYYRSEEVPDMWFSPEVVWVIRGADFTVSPVHHAAIGLVHPSRGISVRFPRFIRCVSDRKPEECSTSADIADMFRSQIRKMD 1436

[Close]

BLAST of NO11G03000 vs. NCBI_GenBank
Match: XP_021983066.1 (DNA ligase 6 [Helianthus annuus] >OTG15627.1 putative DNA LIGASE 6 [Helianthus annuus])

HSP 1 Score: 544.3 bits (1401), Expect = 7.300e-151
Identity = 286/684 (41.81%), Postives = 402/684 (58.77%), Query Frame = 0

Query:  196 VDLPCARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLMALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMKQLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCEGRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNCCPDIPRIVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTCEFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSSPPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLSTRGR----KDVTAEGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGXXXXXXXXXXXXXXXXXXXATHRETKDPEKVQEFFTEALEAGCEGIMCKSLSHE--YEPSKRTESWLKVKKDYIEGLHDTLDLVPIGAWYGNGRKAGWFSPILLACYNPETEELQSLCRCMSGLTDAMYADTTKFYQSEGRIIDAPKS-YVRTGETCPIWFDPCQVWEIRGAELTISPVHKAGVGLVDKQKGMSLRFPRFLKVREDKGVEDATTAAQIAELFRMQIRRVE 873
            V LP  +Y P+   CW  GQ APYLHLA  F LL     ++    +L NMFRSL+ L+P+DVLPAVYL +NK+A   E +++N+GGS V+AA+  A GT+  K++ LY  LGDLGDVAQ  R  Q+LL  P PL++RGVY  + +++   G G   RKR ++V L+RSCR  E KF+VRTLV+NLR GA +                                                       YN  P++  ++ ++++ G++       +  G P+KPMLAKI +G+P++++ +  +  TCEFKYDGQRAQVH L+DGS+++F+R+ +D T ++PDV+ ++++L                 +   +  I+D E+VA+DR  G KLL+FQ LS+R R      +  + + V ICVFAFD++  NG+  L   L  RR  L  LF     G                    AT        K+  FF EA  + CEGIM KSL  E  Y PSKR++SWLKVK+DY+EGL+D+LDLVPIGAWYGNGRKAGW+SP L+ACY+P+T+E QS+CR MSG +DA Y +  +F+  +  +    K  Y +TGE   +WF P  VWEIRGA+ T+SPVH A +GLV   +G+S+RFPR+++ R DK   D +T A IAE+F +Q R+++
Sbjct:  720 VSLPPEKYSPTDHACWKEGQSAPYLHLARTFSLLEDEKGKIKATSMLCNMFRSLLILSPEDVLPAVYLCTNKIAPDHENMELNIGGSVVTAAMEEACGTNRSKIRDLYNSLGDLGDVAQLCRQTQKLLAPPAPLSIRGVYSVLREISVQTGSGSTMRKRSLIVNLMRSCREMEIKFIVRTLVRNLRIGAMM-----------------RTVLPALAHAIVMNSCQGKTIENLKEMLQGLSAAVIEAYNILPNLDLLIPSVMDKGIKFSSETLSMVPGIPIKPMLAKITNGVPQVLKLFQGKALTCEFKYDGQRAQVHKLADGSIRVFSRNGDDTTSRFPDVISILNEL----------------CKPETMTFIIDAEVVAIDRKSGPKLLSFQELSSRDRGGKNSVIAVDNIKVDICVFAFDVMLANGEQLLGLPLRQRRKYLKDLFGEEKIGYFEYSKQITVEADNAYVENEAT------VTKMNLFFEEAFHSSCEGIMVKSLDVEAGYLPSKRSDSWLKVKRDYVEGLNDSLDLVPIGAWYGNGRKAGWYSPFLMACYDPDTDEYQSVCRVMSGFSDAFYIEMKEFFIDDKILGKKDKPVYYQTGEEPDMWFTPEVVWEIRGADFTVSPVHHAAMGLVHPTRGISVRFPRYVRSRSDKKPSDCSTPADIAEMFHLQTRKMD 1364

[Close]

BLAST of NO11G03000 vs. NCBI_GenBank
Match: XP_010528512.1 (PREDICTED: DNA ligase 6 isoform X2 [Tarenaya hassleriana])

HSP 1 Score: 543.5 bits (1399), Expect = 1.200e-150
Identity = 288/682 (42.23%), Postives = 404/682 (59.24%), Query Frame = 0

Query:  196 VDLPCARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLMALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMKQLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCEGRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNCCPDIPRIVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTCEFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSSPPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLST--RGRKD--VTAEGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGXXXXXXXXXXXXXXXXXXXATHRETKDPEKVQEFFTEALEAGCEGIMCKSLSHE--YEPSKRTESWLKVKKDYIEGLHDTLDLVPIGAWYGNGRKAGWFSPILLACYNPETEELQSLCRCMSGLTDAMYADTTKFYQSEGRIIDAPKSYVRTGETCPIWFDPCQVWEIRGAELTISPVHKAGVGLVDKQKGMSLRFPRFLKVREDKGVEDATTAAQIAELFRMQIRRV 872
            V LP  +Y+P    CW  GQ APY+HL   F L+     ++    +L NMFRSL+AL+P+DVLPAVYL +NK+A+  E ID+N+GGS +++A+  A GTS   M+++Y  LGDLGDVAQ  R  Q+LL+ P PL VR V+ T+  +++  G G   +K+ ++V+L+RSCR  E KFLVRTLV+NLR GA L                                                       YN  P +  +V +L+E G+E   +   +  G P+KPMLAKI +G+ E ++ +  + FTCE+KYDGQRAQ+H L DG+V+IF+R+ ++ T ++PD++ ++        SSP +              +LD E+VA DR  GNKL++FQ LST  RG KD  VT + + V ICVF FD++F+NG+  L   L  RR  L  +F     G                    A+        ++  F  E+ ++ CEGIM KSL  +  Y PSKR++SWLKVK+DY+EGL+DTLDLVPIGAW+GNGRKAGW+SP L+AC++PETEE QS+CR MSG +DA Y +  +FY  + +I+     Y RT ET  +WF P  VWEIRGA+ T+SPVH A +G+V   +G+S+RFPRF++   D+  E+  T+A IAE+F  Q R++
Sbjct:  773 VSLPPEKYEPVEHACWRDGQPAPYIHLVRTFTLVEGERGKIKAMSMLCNMFRSLLALSPEDVLPAVYLCTNKIAADHENIDLNIGGSLITSALEEACGTSRSTMREMYNSLGDLGDVAQLCRQTQKLLIPPPPLLVRDVFSTLRKISAQTGTGSTRQKKNLIVKLMRSCREKEIKFLVRTLVRNLRIGAML------------RTVLPALAQAIIMNSFRVLHNGEISDNCFREKIEVLSGAVVEAYNILPSLDVVVPSLMEKGIEFSSSTLSMLPGIPIKPMLAKISNGVQECVKLFQDKAFTCEYKYDGQRAQIHKLLDGTVRIFSRNGDETTSRFPDLIDIIKQF-----SSPAAE-----------TFMLDAEVVATDRKNGNKLMSFQELSTRERGGKDSLVTLDRIKVDICVFVFDIMFINGEQLLAIPLHERRERLKEVFPETRPG------YLDYAKEITVEAEVASLNNEDTLGRISAFLEESFQSSCEGIMVKSLHSDSGYFPSKRSDSWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACFDPETEEFQSVCRVMSGFSDAFYIEMKEFYSGD-KILAKKPPYYRTAETPDMWFSPELVWEIRGADFTVSPVHHAAIGIVHPSRGISIRFPRFIRKVTDRNPEECITSADIAEMFHSQTRKM 1419

[Close]

BLAST of NO11G03000 vs. NCBI_GenBank
Match: XP_004233623.1 (PREDICTED: DNA ligase 6 isoform X1 [Solanum lycopersicum])

HSP 1 Score: 543.1 bits (1398), Expect = 1.600e-150
Identity = 286/683 (41.87%), Postives = 401/683 (58.71%), Query Frame = 0

Query:  196 VDLPCARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLMALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMKQLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCEGRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNCCPDIPRIVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTCEFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSSPPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLST--RGRKD--VTAEGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGXXXXXXXXXXXXXXXXXXXATHRETKDPEKVQEFFTEALEAGCEGIMCKSLSHE--YEPSKRTESWLKVKKDYIEGLHDTLDLVPIGAWYGNGRKAGWFSPILLACYNPETEELQSLCRCMSGLTDAMYADTTKFYQSEGRIIDAPKSYVRTGETCPIWFDPCQVWEIRGAELTISPVHKAGVGLVDKQKGMSLRFPRFLKVREDKGVEDATTAAQIAELFRMQIRRVE 873
            V LP   Y P    CWS+GQ  PY+HLA  FEL+     ++    +L NMFRSL+AL+P+DVLPAVYL +NK+A   E +++N+GGSTV AA+  A GT   K+++LY  LGDLGDVAQ  R  Q LL  P  LT+RGVY  +  ++   G G   RK+ ++V L+ SCR  E KFLVRTLV+NLR GA +                                                       YN  P +  +V +L+E G+E       +A G P+KPMLAKI +G+P++M+ + ++ FTCE+KYDGQRAQ+H LSDGSV++F+R+ ++ T ++PD+V ++ +                  +      ILD E+VA+DR  G KL++FQ LS+  RG KD  +  + + V+IC+F FD++F NG+  L   L  RR  L  LF      G                   A   +     ++  F  +AL A CEGIM KSL  +  Y PSKR+++WLKVK+DY+EGL+D+LDLVPIGAW+GNGRKAGW+SP L+ACYNP+TEE QS+CR MSG +D+ Y +   F+ ++ +I      Y R+ E   +WF P  VW IRGA+ T+SPVH A +GLV   +G+S+RFPRF++   D+  E+ +T+A IA++FR QIR+++
Sbjct:  793 VSLPHEEYSPVEHACWSKGQATPYIHLARTFELVKEEKGKIKATSMLCNMFRSLLALSPEDVLPAVYLCTNKIAPDHENMELNIGGSTVVAALEEACGTKKSKVRELYNSLGDLGDVAQLCRQTQSLLAPPVALTIRGVYSALRRISLQAGSGSAIRKKSLIVNLMCSCREKEMKFLVRTLVRNLRIGAMM----------------RTVLPALAQAVVFNSTPYEGLVENLKDCLQRLSAEVVEAYNILPSLDVLVPSLMEKGIEFSSNTLSMAPGIPIKPMLAKITNGVPQVMKLFQNKAFTCEYKYDGQRAQIHKLSDGSVRVFSRNGDETTSRFPDLVNIITE----------------SCDSRGATFILDAEVVAIDRQNGPKLMSFQELSSRERGSKDSIIALDKIKVEICIFVFDIMFANGEQLLNLPLRQRRKYLKDLF------GDGKVGYLEYATEMTVECDDACADDEATLARMNSFLNDALHASCEGIMVKSLDEDAGYTPSKRSDAWLKVKRDYVEGLNDSLDLVPIGAWHGNGRKAGWYSPFLMACYNPDTEEFQSVCRVMSGFSDSFYVEMRDFFDAD-KICQKKPPYYRSEEVPDMWFSPEVVWVIRGADFTVSPVHHAAIGLVHPSRGISVRFPRFIRCLSDRKPEECSTSADIADMFRTQIRKMD 1436

The following BLAST results are available for this feature:

BLAST of NO11G03000 vs. NCBI_GenBank

BLAST of NO11G03000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
GAQ90890.1	3.600e-166	45.70	putative DNA ligase 1 [Klebsormidium nitens]	[more]
OAE24541.1	3.300e-159	43.19	hypothetical protein AXG93_2415s1200 [Marchantia p...	[more]
PTQ35705.1	3.300e-159	43.19	hypothetical protein MARPO_0069s0045 [Marchantia p...	[more]
XP_017218765.1	1.100e-151	42.02	PREDICTED: DNA ligase 6 isoform X1 [Daucus carota ...	[more]
XP_016560814.1	1.900e-151	42.17	PREDICTED: DNA ligase 1 isoform X1 [Capsicum annuu...	[more]
XP_006430691.1	3.300e-151	41.58	DNA ligase 6 isoform X1 [Citrus clementina] >ESR43...	[more]
XP_006357803.1	7.300e-151	42.17	PREDICTED: DNA ligase 1 isoform X1 [Solanum tubero...	[more]
XP_021983066.1	7.300e-151	41.81	DNA ligase 6 [Helianthus annuus] >OTG15627.1 putat...	[more]
XP_010528512.1	1.200e-150	42.23	PREDICTED: DNA ligase 6 isoform X2 [Tarenaya hassl...	[more]
XP_004233623.1	1.600e-150	41.87	PREDICTED: DNA ligase 6 isoform X1 [Solanum lycope...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL115	nonsL115	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL113	nonsL113	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR010	ncniR010	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR022	ngnoR022	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR018	ngnoR018	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK001953	NSK001953	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO11G03000.2	NO11G03000.2-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide
NO11G03000.1	NO11G03000.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591723	gene_5201	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100092g20	gene5583	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO11G03000.2	NO11G03000.2	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA
NO11G03000.1	NO11G03000.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence
protein sequence

gene sequence

>NO11G03000 ID=NO11G03000|Name=NO11G03000|organism=Nannochloropsis oceanica|type=gene|length=4920bp
CTGTTGTAAGAAGCGCAGGGCTGTGGCTTGGCCCAGGCCCGAAGCCGCGC
CGGTGACGAGGGCCGTGACGTGACTGAGCACCATGCGTTGCGTAGGTGTG
TAGTCTGTTCTTTTTGTTTTGTTTTGTTTTGTTTTGTTGTTTTGTTTTGT
TTTTGTTTTTTTTGAAAGCTGGTCTTTTAGTTCTTTTTGAGCTACATCTC
TCTAGAACTATCGCATGCAACCTGGTCTTAGGCGATAGCAGCGATCTCAG
ACCGAGCAACGGGGCGTTATTGAGACAGAACCCCATGACATGCACACGTA
GGTATACAACGAAACCACGAAGATTATGATGCATACGTATCATGCCCAGC
TCCGTTTGGTAGTCATGTTGTGGCCTTGGCACATTTTGTTTGCTTGACTC
CACATTCTAATCTTGAAGTTCTTCCATACGCCCCCACCAAGTCGTATGCC
TCCCAAGAAGCGCAAGGCCGCCATGACCAGTGGTGCCAGCCCCGCGACAA
CAAAGGCTAAGGGCACGAACGGATTAGCTGGCAAAGTCCCCTCGACACCT
GGCCAGACGAATATCACTGCCTTTTTCGGTGGGGGCGGCGACGGCGGCGG
CGGCGGGTCGGCTGCTGCTTCTCCTAGCGCTGCTGCTGCCATGGCTGCTG
CCTCTTCTGCAGGCACAAAGAAGCAAAAGAATTCGGCAGAGATGGTGGAT
CTTCTTACCTCGGAAGAAGACGGTGTTCATGACGACGAAGTGGAGGAGGA
GCAACAGGAAGTGCTCCCGCAGATTGACCTGACAGCCACCGAAACAAAAG
AGCGACATGAGACCCAAGCCTTGACCGAGGCCATGGAGAAGCTGCCGGAA
CGCGAAGCCAAGGATTTTGTCGACGAGATGGGCGCTGGCAAACAGCATAA
ACCAGAAAGAGACGGGAAGAATAAATCGGCCACGATACCTTTGCCCACTC
CTCCTACATCTCCCTCAGCCTTCTTCAGTGCCGCCGGTGCCGCTAGCAGC
AAAGCCACCGCCTCCATGACTGGCAGCCCCGTCGACCTTCCGTGTGCACG
TTATCAGCCCTCCTCTGACGGTTGTTGGTCTCGGGGGCAGCTGGCGCCTT
ACTTGCACCTTGCTTGGGCGTTCGAGCTGCTTTGTTCCACCACCCGCCGC
CTGACAAAAGCCGATGTCCTCGTCAACATGTTTCGGTCGCTTATGGCCCT
GGCCCCGGACGACGTCCTCCCTGCTGTGTATTTGTCAAGCAACAAGCTGG
CCTCGTCGTTTGAGGGCATCGATATCAATGTGGGCGGCTCGACGGTGTCT
GCGGCGGTGATTCACGCCACTGGGACGTCGTCAGACAAGATGAAGCAGTT
GTATACGGAGTTGGGgtgagtagggggagaaaggagggaaagggctgatc
aaacgcttgccatcaaataataaattgtattatttatttgcccaatcata
tcggaatcaacctcctgaaatactttcctccctctcctctcttcctccct
tcctaacatagGGATCTCGGGGATGTGGCGCAAGCCCTGCGAGTGAAGCA
GCGCCTCCTCGTGGTCCCTGAGCCCCTGACGGTGCGAGGCGTCTATCAGA
CTATAATCGATATGGCCAGCATGAAAGgtacctcttttttccttcctccc
accctttatagccacggaactagcgttcctcctttccttcctccgtcttt
ccctcccgcgcgtcttcgctcccgcttcccttaatttgactcgcggcatg
tcttccaacaaacgacacctacaatcatacgtacgcaataataagGGCAA
GGATGCGAGGGTCGGAAACGCATGATGATGGTGCGTCTCATTCGCTCGTG
TCGAGGCCCCGAAGCCAAGTTCCTAGgtgagtcttgccctacgttccctc
cttcccccccccccctccctctatcctattttttccttccttccttcctt
ctttccttacattcttaatctaaggctaggcggtatgtaggggaggaggt
ggtagtgggacgatgggacagggggtaaatggttcactgtacatgcatgc
atggtgatataaatttcgctggtggtgatattaccatggccgccgtcatg
cactgtttaatcaatgcgaaaggtacctcttatcctccgtccctctttcc
atttctcactgctttccttcccccctccttccctccctctttcatctctc
ctccctccctccctccctccctccctccccccccccgacccaagTCCGCA
CCCTCGTCCAGAATCTCCGCACGGGCGCAACACTCACCAGTGTACTGGCA
GCTCTTGCCATGGCCGCCGTCATGCACCACGCCGAGCGGGAGAAGGAGGG
AGGGACCGAGGGAGGGACCGAGGGAGGGACGGGGAGGGGGAGGGGGAAGG
CAGTGATGGAGGCACGGTTGAAGGCGGCGCAGGTGGCAGTTAAGGAATGC
TACAACTGCTGgtataagcttcccttcgccctccccccttccatctctct
ctatgtccattccttttactttccactaaatcgaagactctaaaatcctg
catacccctccctccctcccttcctccctccctccctgcctgctaccttt
ctctcttcctcagTCCCGACATTCCCCGCATCGTCAAGGCCCTGGTAGAG
GGCGGTTTGGAAGCCATGCAGACGGCCTGTGAGGTAGCTGTAGGCACGCC
GGTCAAACCTATGCTTGCCAAGATCTGCAGgtagggagggagggaaagga
gggggggggaaagagggcgttgtgtagattttcctgccagatgactgatc
ctttcctccctccttccctccctcccttccttcctcctttcctttcttac
tccctaagCGGTATTCCTGAGCTCATGGAGAAATACGGTTCCGAGCCGTT
TACTTGTGAATTCAAATACGACGGCCAACGGGCCCAAGTACACCTCCTCA
GCGACGGGAGCGTCAAGATTTTCAATCGCCATATCGAGgtccgtaccctc
cactctccctatcaccctccctccctctctccttccttccatttttccct
tccttcacttcacgctcttttcctcttcccgtacaccccttttcacctct
ccctccctccctccctccctccctccctccctccttccctcccctcccag
GACATGACTGACAAATACCCTGACGTCGTCCAGCTGATGCACGACCTGCA
ACGAGCCCTCCGTTCCTCCCCCCCTTCCTCTCTCCCTCCCTCCCCCTCCG
AGCAACCGTTGGTAGACGTCATCCTGGACACAGAACTCGTGGCTGTGGAC
CGAGCGCAGGGCAACAAGCTCCTGGCCTTTCAGACGTTGTCAACCCGAGG
ACGgtatgaagggagggagggaaagaagtgagggaggagggagggaggga
gggagggaggggatgcgcggtgttcagaactatgacctcttgtcaatcct
tgtctttttccctccctccctccctctccctccctccctccctccctctc
tccctccctccctccctccgtcgcagCAAGGACGTGACCGCCGAGGGGGT
CACGGTGCAAATCTGCGTGTTTGCCTTTGATCTCCTCTTCCTCAATGGGC
AGTCGCATCTCAAGGAGCATCTTGAATCCCGGCGAACCCTCCTGTACTCC
CTCTTTGCACCTGTGGTGGAGGGAGGGAAGGAGAGAGGGAAGGAGGGAGG
GAAGGAGGGGGGGTTTGAAGGTCGTTTTGACTTTGCGACCCATAGAGAGA
CGAAGGACCCGGAAAAGGTGCAGGAATTTTTCACAGAAGCTTTGGAGGCA
GGATGCGAAGGGATCATGGTGAGGGAGGGGGGGAGGGAGGGAGGGAGGGT
GATTGTATGTATATACCGTTAATAGGGCACGATTTCTCTCATTCTTGCTC
TCTGCTTCCCCCGCTCTCCTTCCTTTCAAACTAGTGCAAGTCCCTCTCCC
ACGAGTATGAGCCGTCCAAGCGGACTGAATCCTGGCTGAAGGTGAAGAAA
GATTACATCGAGGGTTTGCATGACACTCTCGACCTGGTCCCTATCGGCGC
CTGgtacatacccctccatccctccctccatccctccctccatccctccc
tccatttctccttccatccctctcttcccccgtccctgcgcttttcttcc
agtctaggcgcatgcccttctttcttctttgtcttgtcgtccgatcctct
ttttccctccctccctccctccctttcctacagGTACGGCAACGGCCGCA
AGGCCGGTTGGTTCTCTCCCATCCTCCTCGCCTGCTACAACCCCGAGACC
GAAGAGCTCCAGTCCCTCTGTCGGTGCATGTCGGGATTAACCGATGCCAT
GTACGCCGACACCACCAAATTTTATCAGAGTGAGGGGAGGATCATTGACG
CGCCTAAGAGTTACGTCAGGACAGGGGAGACGTGCCCGATATGGTTCGAC
CCCTGTCAGGTTTGGGAGATACGGGGGGCGGAACTGACCATAAGCCCGGT
GCATAAGGCAGGGGTGGGGTTGGTAGACAAGCAGAAGGGGATGAGTTTGA
GGTTTCCGCGCTTTTTGAAGGTGAGGGAGGATAAGGGGGTGGAGGACGCA
ACGACTGCGGCGCAGATAGCAGAGTTGTTCAGGATGCAGATTAGGAGGGT
AGAGGTGGAGGGGGATGGGGAGGGTAAAGGAGGGGGCGGAGGGAAGCAGA
AGGTGGCAGCGGAGGAAGAGGAAGGAGGAGGGGTCGAGGAAGCGGAAGAT
TACTGGGAAGATATTTTGTAAGTGGAGGGTGTAAGAGGGGAGGTAGAGTT
TAATGATTCAAAGAGAAGGACGAGGACATAGCTAGTGTACAGCAAGCCCT
GGACCGACAAGCAGCCCGTGGCATATGCCAATGGGACGCAAAGAAGAAGA
AAACTGAAGATAGTCCCGTG

protein sequence of NO11G03000.2

>NO11G03000.2-protein ID=NO11G03000.2-protein|Name=NO11G03000.2|organism=Nannochloropsis oceanica|type=polypeptide|length=710bp
MPPKKRKAAMTSGASPATTKAKGTNGLAGKVPSTPGQTNITAFFGGGGDG
GGGGSAAASPSAAAAMAAASSAGTKKQKNSAEMVDLLTSEEDGVHDDEVE
EEQQEVLPQIDLTATETKERHETQALTEAMEKLPEREAKDFVDEMGAGKQ
HKPERDGKNKSATIPLPTPPTSPSAFFSAAGAASSKATASMTGSPVDLPC
ARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLM
ALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMK
QLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCE
GRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLTSVLAALAMAAVMH
HAEREKEGGTEGGTEGGTGRGRGKAVMEARLKAAQVAVKECYNCCPDIPR
IVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTC
EFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSS
PPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLSTRGRKDVTA
EGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGKERGK
EGGKEGGFEGRFDFATHRETKDPEKVQEFFTEALEAGCEGIMVREGGREG
GRVIVCIYR*

protein sequence of NO11G03000.1

>NO11G03000.1-protein ID=NO11G03000.1-protein|Name=NO11G03000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=911bp
MPPKKRKAAMTSGASPATTKAKGTNGLAGKVPSTPGQTNITAFFGGGGDG
GGGGSAAASPSAAAAMAAASSAGTKKQKNSAEMVDLLTSEEDGVHDDEVE
EEQQEVLPQIDLTATETKERHETQALTEAMEKLPEREAKDFVDEMGAGKQ
HKPERDGKNKSATIPLPTPPTSPSAFFSAAGAASSKATASMTGSPVDLPC
ARYQPSSDGCWSRGQLAPYLHLAWAFELLCSTTRRLTKADVLVNMFRSLM
ALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGTSSDKMK
QLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASMKGQGCE
GRKRMMMVRLIRSCRGPEAKFLVRTLVQNLRTGATLTSVLAALAMAAVMH
HAEREKEGGTEGGTEGGTGRGRGKAVMEARLKAAQVAVKECYNCCPDIPR
IVKALVEGGLEAMQTACEVAVGTPVKPMLAKICSGIPELMEKYGSEPFTC
EFKYDGQRAQVHLLSDGSVKIFNRHIEDMTDKYPDVVQLMHDLQRALRSS
PPSSLPPSPSEQPLVDVILDTELVAVDRAQGNKLLAFQTLSTRGRKDVTA
EGVTVQICVFAFDLLFLNGQSHLKEHLESRRTLLYSLFAPVVEGGKERGK
EGGKEGGFEGRFDFATHRETKDPEKVQEFFTEALEAGCEGIMCKSLSHEY
EPSKRTESWLKVKKDYIEGLHDTLDLVPIGAWYGNGRKAGWFSPILLACY
NPETEELQSLCRCMSGLTDAMYADTTKFYQSEGRIIDAPKSYVRTGETCP
IWFDPCQVWEIRGAELTISPVHKAGVGLVDKQKGMSLRFPRFLKVREDKG
VEDATTAAQIAELFRMQIRRVEVEGDGEGKGGGGGKQKVAAEEEEGGGVE
EAEDYWEDIL*

Synonyms

Publications