NO11G02750, NO11G02750 (gene) Nannochloropsis oceanica

Overview
NameNO11G02750
Unique NameNO11G02750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1658
Alignment locationchr11:865786..867443 +

Link to JBrowse

Properties
Property NameValue
DescriptionLag1 and cln8 lipid-sensing domain containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:865786..867443 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR006634TLC-dom
Homology
BLAST of NO11G02750 vs. NCBI_GenBank
Match: EWM24954.1 (lag1 and cln8 lipid-sensing domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 511.5 bits (1316), Expect = 1.700e-141
Identity = 249/295 (84.41%), Postives = 274/295 (92.88%), Query Frame = 0
Query:    1 MYKDLLSGLTRFYTAEAIDGEALFGMPLPLALGYGLLCTMSFFGSGMVLRQVSATYRRLPKQARTDWDNRMVALGHALIMSYRAFRYWIVLKPLFGHDFSAIKISPVLDIYEKDTMRIMTGYMLYDLVVEIVTPAVYDYAVLFHHVAGLLSHWHTLQTEDVASGWYTMMVYLAEGSTPILHAAWMMNTVGLADGLAFKLLTLALLVAFFVVRILVSPLLAYTYLAPANRHLYDGRDGVFYFQLCIVFAFAGLNFFWFYKLLTLVYRKARGIKSPMTSPVKRRQEPSYSSGKSKKA 296
            MY+D+LSGL+RFYT E+IDGEALFG+ LPLAL YGLLCT SFFGSG+VL +VSATYRRLPKQARTDWDNRMVALGHA+IMSYRAFRYWIVLKPLFGH FS + I+P LD+YEKDTMRIM GYMLYDLVVE+ TPAVYDYAVLFHH+AG+LSHWHTLQT DVASGWYTM+VYLAEGSTPILH AWMMNTVGL+DG+AFKLLTLALLV FFVVRILVSPLLAYTYLAP NRHLYDGRDGVFYFQL IVFAFAGLN+FWFYKLLTL+YRKARGIK+P++SPVK+R +P+    KSKKA
Sbjct:   38 MYQDMLSGLSRFYTVESIDGEALFGIRLPLALAYGLLCTASFFGSGIVLGKVSATYRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFGHTFSLLSIAPALDMYEKDTMRIMIGYMLYDLVVELATPAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLLAYTYLAPGNRHLYDGRDGVFYFQLFIVFAFAGLNYFWFYKLLTLIYRKARGIKTPISSPVKKRSKPATEGSKSKKA 332          
BLAST of NO11G02750 vs. NCBI_GenBank
Match: XP_004367876.1 (hypothetical protein ACA1_288420 [Acanthamoeba castellanii str. Neff] >ELR25121.1 hypothetical protein ACA1_288420 [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 83.2 bits (204), Expect = 1.500e-12
Identity = 68/238 (28.57%), Postives = 109/238 (45.80%), Query Frame = 0
Query:   36 LLCTMSFFGSGMVLRQVSATYRRLPKQARTDWDNRMVALGHALIMSYRAFRYWIVLKPLFGHDFSAIKISPVLDIYEKDTMRIMTGYMLYDLVVEIVTPAVYDYAVLFHHVAGLLSHWHTLQTEDVASGWYTMMVYLAEGSTPILHAAWMMNTVGLADGLAFKLLTLALLV-AFFVVRILVSPLLAYTYLAPANRHLYDGRD------GVFYFQLCIVFAFAGLNFFWFYKLLTLVYR 267
            ++ T  +  S  + R+VSATYR LP + +  WDNR+VA  HA+++ Y AF   +  +PL      A         +   TM    GY ++D V+ I+    +    L H +  L +   +L   D    +Y       E STP L+  W M+ +G+++   FK L   LLV +FF+ RI+      Y+ +   + H Y          G+ Y+    +    GLN +WFY ++    R
Sbjct:   28 IIWTAIYLASAPISRRVSATYRGLPFKLKMQWDNRIVAFLHAVVICYAAFWGLLCDEPLKADHLHA------YSTWAYATMITACGYFIWDAVMCIIYFKEFQLGFLLHALGCLFTFLGSL---DGVFMYYGYFYLTFEASTPFLNLHWFMDKLGVSNSNPFKKLNAGLLVLSFFLFRIISG--CGYSAVVWQDIHRYIAATSNMANVGIMYYFYFAILLLNGLNCYWFYSIVKFATR 254          
BLAST of NO11G02750 vs. NCBI_GenBank
Match: GAQ81464.1 (hypothetical protein KFL_000810050 [Klebsormidium nitens])

HSP 1 Score: 73.2 bits (178), Expect = 1.600e-9
Identity = 68/258 (26.36%), Postives = 122/258 (47.29%), Query Frame = 0
Query:   28 LPLALGYGLLCTMSFFGSGMVLRQVSATYRRLPKQARTDWDNRMVALGHALIMSYRA---FRYWIVLKP-LFGHDFSAIKISPVLDIYEKDTMRIMTGYMLYDL-VVEIVTPAVYDYAVLFHHVAGLLSHWHTLQTEDVASGWYTMMVYLAEGSTPILHAAWMMNTVGLADGLAFKLLTLALLVAFFVVRILVSPLLAYTYLAPANRHLYDGRDGVFYF---QLCIVFA----FAGLNFFWFYKLLTLVYRKARGIKS 274
            +P A+ +G + ++S F        +   YR+LP   +T+WDNRM +  H+L +++ A   FR  + L+P L   D   ++ +P    +      +  GY L D+ ++    PA+     L HHVA  L+    L T +     + M+V++ E +TP ++  W ++  GL   + + +  + L V +   R+LV   L +        ++YD RD +  F   Q   +F     F  LN +WF ++L  + +   G K+
Sbjct:   32 VPAAI-FGAVASLSVFILSATYSPLLEAYRKLPPMKKTEWDNRMFSTTHSLFVTFAAISFFRSSLFLEPSLAKDDLVILRATP----FTFAAFGLSLGYFLLDIAMMTFYYPALGGAEYLVHHVAAALAILTALVTGN--GHVFIMIVFVTEMTTPFVNLRWYLSNSGLRQSVWYTINGVLLFVGWLTARVLVFLYLFW--------YMYDHRDELHVFTPTQKAALFGLPPIFFVLNLYWFLRILVGMLKLVFGPKA 274          
BLAST of NO11G02750 vs. NCBI_GenBank
Match: XP_022086062.1 (transmembrane protein 136-like isoform X1 [Acanthaster planci] >XP_022086063.1 transmembrane protein 136-like isoform X1 [Acanthaster planci])

HSP 1 Score: 72.8 bits (177), Expect = 2.000e-9
Identity = 53/201 (26.37%), Postives = 97/201 (48.26%), Query Frame = 0
Query:   53 SATYRR---LPKQARTDWDNRMVALGHALIMSYRAFRYWIVLKPLFGHDFSAIKIS---PVLDIYEKDTMRIMTGYMLYDLVVEIVTPAVYDYAVLFHHVAGLLSHWHTLQTEDVASGWYTMMVYLAEGSTPILHAAWMMNTVGLADGLAFKLLTLALLVAFFVVRILVSPLLAYTYLAPANRHLYDGRDGVFYFQLCIVF 248
            SA YR    L      +W++R+V + HA  +        +V+  +FG  FS    +      + YE  TM +  GY LYD +  ++    ++ A++ HH+  +L    +L    ++       ++LAE + P+L   W+M   G+ +G+ ++L  +  LVAFF++R+ +     Y YL     HL+    G+  + + I+F
Sbjct:   18 SALYRALCFLQPHKSYEWNSRIVVVIHAGTI--------LVMSSVFGFFFSPWPFTHPGGKSNPYENSTMVVCNGYFLYDFIRSMLYDTRHNRAMVLHHLVCILFTSASL-VSGLSGTEINFSLFLAELTNPMLQIRWLMRNAGITEGILYELNQVVFLVAFFIIRVGIGTYWIYHYLLHPVPHLFFKLGGILLYAVSIIF 209          
BLAST of NO11G02750 vs. NCBI_GenBank
Match: XP_022086064.1 (transmembrane protein 136-like isoform X2 [Acanthaster planci])

HSP 1 Score: 66.6 bits (161), Expect = 1.500e-7
Identity = 38/137 (27.74%), Postives = 71/137 (51.82%), Query Frame = 0
Query:  111 YEKDTMRIMTGYMLYDLVVEIVTPAVYDYAVLFHHVAGLLSHWHTLQTEDVASGWYTMMVYLAEGSTPILHAAWMMNTVGLADGLAFKLLTLALLVAFFVVRILVSPLLAYTYLAPANRHLYDGRDGVFYFQLCIVF 248
            YE  TM +  GY LYD +  ++    ++ A++ HH+  +L    +L    ++       ++LAE + P+L   W+M   G+ +G+ ++L  +  LVAFF++R+ +     Y YL     HL+    G+  + + I+F
Sbjct:   46 YENSTMVVCNGYFLYDFIRSMLYDTRHNRAMVLHHLVCILFTSASL-VSGLSGTEINFSLFLAELTNPMLQIRWLMRNAGITEGILYELNQVVFLVAFFIIRVGIGTYWIYHYLLHPVPHLFFKLGGILLYAVSIIF 181          
BLAST of NO11G02750 vs. NCBI_GenBank
Match: ORX55343.1 (hypothetical protein BCR36DRAFT_410281 [Piromyces finnis])

HSP 1 Score: 65.5 bits (158), Expect = 3.200e-7
Identity = 57/222 (25.68%), Postives = 97/222 (43.69%), Query Frame = 0
Query:   56 YRRLPKQARTDWDNRMVALGHALIMSYRAFRYWIVLKPLFGHDFSAIKISPVLDIYEKDTMRIMTGYMLYDLVVEIVTPAVYDYAVLFHHVAGLLSHWHTLQTEDVASGWYTMMVYLAEGSTPILHAAWMMNTVGLADGLAFKLLTLALLVAFFVVRILVSPLLAYTYLAPANRHLYDGRDGVFYFQLCIV---FAFAGLNFFWFYKLLTLVYRKARGIKSP 275
            Y +L    R DW++R+VA  HA+I+S   F  +++ K  F  D +    S         T+ I  GY ++D++  +          + H     L +  T ++     G Y +M  + E ST  LH  W+ + + L   +   + +L LLV FF VRI +  +  +  L   +  ++D      Y  L  V        LN+ WFYK++  +++     K P
Sbjct:   70 YLKLSNYKRKDWNSRVVAFIHAIIVS--PFCIFLICKFGFPWDKNENDYSDKEINIFYSTISISIGYFMWDIIYSVGDYKKGGIGFVIHGFGAFLIYIFTFKSN--VLGHYAIMYLIYEFSTIFLHTYWVFDKIDLTGSIGQLISSLLLLVTFFTVRIAIGSIFIFKLL---HDIIFDREVCSVYLSLYFVLNIIPMQTLNYIWFYKMIYSIFKHFEPSKKP 284          
BLAST of NO11G02750 vs. NCBI_GenBank
Match: OAE27145.1 (hypothetical protein AXG93_4666s1160 [Marchantia polymorpha subsp. ruderalis] >PTQ41268.1 hypothetical protein MARPO_0035s0060 [Marchantia polymorpha] >PTQ41269.1 hypothetical protein MARPO_0035s0060 [Marchantia polymorpha] >PTQ41270.1 hypothetical protein MARPO_0035s0060 [Marchantia polymorpha])

HSP 1 Score: 64.3 bits (155), Expect = 7.200e-7
Identity = 58/218 (26.61%), Postives = 98/218 (44.95%), Query Frame = 0
Query:   55 TYRRLPKQARTDWDNRMVALGHALIMSYRAFRYWIVLKPLFGHDFSAIKISPV---LDIYEKDTMRIMTGYMLYDLVVEIVT-PAVYDYAVLFHHVAGLLSHWHTLQTEDVASGWYTMMVYLAEGSTPILHAAWMMNTVGLADGLAFKLLTLALLVAFFVVRILVSPLLAYTYLAPANRHLYDGRDGV-------FYFQLCIVFAFAGLNFFWFYKLL 262
            +YR L K+ + +WDNR  +  HA   +  A  Y + +  +F   + +    P+     I+   T+   TGY   DL + + T P++     + HH+  + S    L      + +Y +MV  +E STP ++  W + T GL +  AF    +ALLV +   R+++     Y        H+Y   D +       FYF        A +N +WFYK++
Sbjct:   55 SYRGLSKEKQVEWDNRGFSTAHAFFCTVAA-GYLLYISDVF---YDSAPYGPIPFRSTIFSFFTIAFSTGYFFADLAMILWTYPSLGGPEYVVHHLLSIGS--LILANYTAHAHYYILMVLFSEVSTPFINLRWYLLTCGLKNSKAFVYNGMALLVVWLFARVILFIYFFY--------HVYTQFDQISQLYLPGFYFMFTAPPTLALMNLYWFYKIV 258          
The following BLAST results are available for this feature:
BLAST of NO11G02750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM24954.11.700e-14184.41lag1 and cln8 lipid-sensing domain containing prot... [more]
XP_004367876.11.500e-1228.57hypothetical protein ACA1_288420 [Acanthamoeba cas... [more]
GAQ81464.11.600e-926.36hypothetical protein KFL_000810050 [Klebsormidium ... [more]
XP_022086062.12.000e-926.37transmembrane protein 136-like isoform X1 [Acantha... [more]
XP_022086064.11.500e-727.74transmembrane protein 136-like isoform X2 [Acantha... [more]
ORX55343.13.200e-725.68hypothetical protein BCR36DRAFT_410281 [Piromyces ... [more]
OAE27145.17.200e-726.61hypothetical protein AXG93_4666s1160 [Marchantia p... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL112nonsL112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR020ngnoR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001996NSK001996Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02750.1NO11G02750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591629gene_5175Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100148g12gene5538Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02750.1NO11G02750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02750 ID=NO11G02750|Name=NO11G02750|organism=Nannochloropsis oceanica|type=gene|length=1658bp
ACAGGCAGCCAAGATCTCCCACAGGCCCTCCACCTTGTCCTACTACAATG
TACAAGGACTTGCTCTCCGGCCTCACCCGCTTCTACACGGCGGAGGCCAT
CGACGGGGAGGCCCTATTTGGCATGCCGTTGCCCTTGGCACTGGGGTATG
GGCTGCTGTGCACAATGTCCTTTTTTGGGAGTGGGATGGTGTTGCGCCAG
GTCTCGGCTACCTATCGGCGCTTGCCCAAGCAGGCCCGCACGGACTGGGA
CAACCGCATGGTGGCTTTAGgtacgtggataacgggagagggatgatcat
ttgcggtgtttcgaggttattgtgtgtgtgtttgtactaatgtaaatagg
ttggattgctgccacgcgtcacgctgacgtacccccctcttcttccggga
tgtgcgcgctttgtcgtaatggcacgcggcaatgctgcataccatgctgc
atccttttcataccatcgccaagactcaccaaatccgccattctccttcc
tcccctacttcttctttcaccccgtcaaataaataaaataaaataaaaca
gGTCATGCCCTCATTATGAGCTACCGGGCCTTTCGGTACTGGATCGTGCT
CAAGCCTCTCTTCGGCCACGACTTCTCCGCCATTAAAATCTCCCCCGTCT
TGGACATTTACGAGAAGGACACCATGCGCATCATGACCGGTTATATGCTT
TATGATTTGGTGGTTGAAATTGTCACTCCAGCCGTGTATGACTATGCGGT
CCTGTTCCACCACGTGGCAGGCTTGCTCTCCCACTGGCACACGCTGCAAA
CTGAAGACGTGGCCTCCGGGTGGTACACGATGATGGTTTACCTGGCCGAG
GGGTCCACACCCATCCTTCACGCGGCGTGGATGATGAATACTGTGGGGCT
TGCGGACGGCCTGGCCTTCAAGCTGTTGACGCTGGCGTTGCTCGTGGCGT
TCTTTGTGGTGCGCATTCTAGTCTCGCCTCTATTAGCCTACACATACCTG
GCCCCGGCCAATCGCCACTTGTACGACGGCCGGGACGGGGTCTTTTACTT
CCAGCTGTGCATCGTCTTTGCCTTTGCTGGGTTGAACTTCTTCTGGTTCT
ACAAGTTGTTAACCTTGGTATACCGgtacgtttttggggttctctttttt
gacctccctccctctctccctccttcccttggtttaatcctccttcttga
gccggaaggaaacttccaattgtaagacccatcagtcacttactcacgcc
ctaccttccccctccctccctctctccctctctccctgtctacagCAAAG
CCAGAGGCATCAAGAGCCCCATGACCTCGCCCGTCAAGCGACGACAAGAA
CCTTCTTACTCATCAGGTAAATCCAAAAAGGCCGCATAGCACCCAGAAAA
AAAAGGAACGGAAGGATGATTTGTGTCCATAAAAAATGGATGGGGGCGGA
GAAGTGAAATGCTATAAAGTATCAGGAAGCAGATTGAGGAGGAAGAGGTG
TGTTGATGGATGGACGGGAGGGAGGAAGGGAGGAAAGGTGTCGCACCCAC
TCGTTATGCTCAAAAGAAGGTAGAGAAGAACACGATTGGGGACCAGGAGA
GCGAAATAAGTAGATAATCAACATAAAGATAAAAATGCGGAAAAAGAGGA
GGTGGATA
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protein sequence of NO11G02750.1

>NO11G02750.1-protein ID=NO11G02750.1-protein|Name=NO11G02750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MYKDLLSGLTRFYTAEAIDGEALFGMPLPLALGYGLLCTMSFFGSGMVLR
QVSATYRRLPKQARTDWDNRMVALGHALIMSYRAFRYWIVLKPLFGHDFS
AIKISPVLDIYEKDTMRIMTGYMLYDLVVEIVTPAVYDYAVLFHHVAGLL
SHWHTLQTEDVASGWYTMMVYLAEGSTPILHAAWMMNTVGLADGLAFKLL
TLALLVAFFVVRILVSPLLAYTYLAPANRHLYDGRDGVFYFQLCIVFAFA
GLNFFWFYKLLTLVYRKARGIKSPMTSPVKRRQEPSYSSGKSKKAA*
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Synonyms
Publications