NO11G02750.1, NO11G02750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02750.1
Unique NameNO11G02750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1207
Alignment locationchr11:865786..867443 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:865786..867443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G02750.1 vs.
Match: EWM24954.1 (lag1 and cln8 lipid-sensing domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 511.5 bits (1316), Expect = 1.700e-141
Identity = 249/295 (84.41%), Postives = 274/295 (92.88%), Query Frame = 0
Query:    1 MYKDLLSGLTRFYTAEAIDGEALFGMPLPLALGYGLLCTMSFFGSGMVLRQVSATYRRLPKQARTDWDNRMVALGHALIMSYRAFRYWIVLKPLFGHDFSAIKISPVLDIYEKDTMRIMTGYMLYDLVVEIVTPAVYDYAVLFHHVAGLLSHWHTLQTEDVASGWYTMMVYLAEGSTPILHAAWMMNTVGLADGLAFKLLTLALLVAFFVVRILVSPLLAYTYLAPANRHLYDGRDGVFYFQLCIVFAFAGLNFFWFYKLLTLVYRKARGIKSPMTSPVKRRQEPSYSSGKSKKA 296
            MY+D+LSGL+RFYT E+IDGEALFG+ LPLAL YGLLCT SFFGSG+VL +VSATYRRLPKQARTDWDNRMVALGHA+IMSYRAFRYWIVLKPLFGH FS + I+P LD+YEKDTMRIM GYMLYDLVVE+ TPAVYDYAVLFHH+AG+LSHWHTLQT DVASGWYTM+VYLAEGSTPILH AWMMNTVGL+DG+AFKLLTLALLV FFVVRILVSPLLAYTYLAP NRHLYDGRDGVFYFQL IVFAFAGLN+FWFYKLLTL+YRKARGIK+P++SPVK+R +P+    KSKKA
Sbjct:   38 MYQDMLSGLSRFYTVESIDGEALFGIRLPLALAYGLLCTASFFGSGIVLGKVSATYRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFGHTFSLLSIAPALDMYEKDTMRIMIGYMLYDLVVELATPAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLLAYTYLAPGNRHLYDGRDGVFYFQLFIVFAFAGLNYFWFYKLLTLIYRKARGIKTPISSPVKKRSKPATEGSKSKKA 332          
The following BLAST results are available for this feature:
BLAST of NO11G02750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24954.11.700e-14184.41lag1 and cln8 lipid-sensing domain containing prot... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02750NO11G02750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02750.1NO11G02750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02750.1.cds1NO11G02750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02750.1.cds2NO11G02750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02750.1.cds3NO11G02750.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02750.1 ID=NO11G02750.1|Name=NO11G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1207bp
ACAGGCAGCCAAGATCTCCCACAGGCCCTCCACCTTGTCCTACTACAATG
TACAAGGACTTGCTCTCCGGCCTCACCCGCTTCTACACGGCGGAGGCCAT
CGACGGGGAGGCCCTATTTGGCATGCCGTTGCCCTTGGCACTGGGGTATG
GGCTGCTGTGCACAATGTCCTTTTTTGGGAGTGGGATGGTGTTGCGCCAG
GTCTCGGCTACCTATCGGCGCTTGCCCAAGCAGGCCCGCACGGACTGGGA
CAACCGCATGGTGGCTTTAGGTCATGCCCTCATTATGAGCTACCGGGCCT
TTCGGTACTGGATCGTGCTCAAGCCTCTCTTCGGCCACGACTTCTCCGCC
ATTAAAATCTCCCCCGTCTTGGACATTTACGAGAAGGACACCATGCGCAT
CATGACCGGTTATATGCTTTATGATTTGGTGGTTGAAATTGTCACTCCAG
CCGTGTATGACTATGCGGTCCTGTTCCACCACGTGGCAGGCTTGCTCTCC
CACTGGCACACGCTGCAAACTGAAGACGTGGCCTCCGGGTGGTACACGAT
GATGGTTTACCTGGCCGAGGGGTCCACACCCATCCTTCACGCGGCGTGGA
TGATGAATACTGTGGGGCTTGCGGACGGCCTGGCCTTCAAGCTGTTGACG
CTGGCGTTGCTCGTGGCGTTCTTTGTGGTGCGCATTCTAGTCTCGCCTCT
ATTAGCCTACACATACCTGGCCCCGGCCAATCGCCACTTGTACGACGGCC
GGGACGGGGTCTTTTACTTCCAGCTGTGCATCGTCTTTGCCTTTGCTGGG
TTGAACTTCTTCTGGTTCTACAAGTTGTTAACCTTGGTATACCGCAAAGC
CAGAGGCATCAAGAGCCCCATGACCTCGCCCGTCAAGCGACGACAAGAAC
CTTCTTACTCATCAGGTAAATCCAAAAAGGCCGCATAGCACCCAGAAAAA
AAAGGAACGGAAGGATGATTTGTGTCCATAAAAAATGGATGGGGGCGGAG
AAGTGAAATGCTATAAAGTATCAGGAAGCAGATTGAGGAGGAAGAGGTGT
GTTGATGGATGGACGGGAGGGAGGAAGGGAGGAAAGGTGTCGCACCCACT
CGTTATGCTCAAAAGAAGGTAGAGAAGAACACGATTGGGGACCAGGAGAG
CGAAATAAGTAGATAATCAACATAAAGATAAAAATGCGGAAAAAGAGGAG
GTGGATA
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protein sequence of NO11G02750.1

>NO11G02750.1-protein ID=NO11G02750.1-protein|Name=NO11G02750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MYKDLLSGLTRFYTAEAIDGEALFGMPLPLALGYGLLCTMSFFGSGMVLR
QVSATYRRLPKQARTDWDNRMVALGHALIMSYRAFRYWIVLKPLFGHDFS
AIKISPVLDIYEKDTMRIMTGYMLYDLVVEIVTPAVYDYAVLFHHVAGLL
SHWHTLQTEDVASGWYTMMVYLAEGSTPILHAAWMMNTVGLADGLAFKLL
TLALLVAFFVVRILVSPLLAYTYLAPANRHLYDGRDGVFYFQLCIVFAFA
GLNFFWFYKLLTLVYRKARGIKSPMTSPVKRRQEPSYSSGKSKKAA*
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mRNA from alignment at chr11:865786..867443+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02750.1 ID=NO11G02750.1|Name=NO11G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1658bp|location=Sequence derived from alignment at chr11:865786..867443+ (Nannochloropsis oceanica)
ACAGGCAGCCAAGATCTCCCACAGGCCCTCCACCTTGTCCTACTACAATG TACAAGGACTTGCTCTCCGGCCTCACCCGCTTCTACACGGCGGAGGCCAT CGACGGGGAGGCCCTATTTGGCATGCCGTTGCCCTTGGCACTGGGGTATG GGCTGCTGTGCACAATGTCCTTTTTTGGGAGTGGGATGGTGTTGCGCCAG GTCTCGGCTACCTATCGGCGCTTGCCCAAGCAGGCCCGCACGGACTGGGA CAACCGCATGGTGGCTTTAGGTACGTGGATAACGGGAGAGGGATGATCAT TTGCGGTGTTTCGAGGTTATTGTGTGTGTGTTTGTACTAATGTAAATAGG TTGGATTGCTGCCACGCGTCACGCTGACGTACCCCCCTCTTCTTCCGGGA TGTGCGCGCTTTGTCGTAATGGCACGCGGCAATGCTGCATACCATGCTGC ATCCTTTTCATACCATCGCCAAGACTCACCAAATCCGCCATTCTCCTTCC TCCCCTACTTCTTCTTTCACCCCGTCAAATAAATAAAATAAAATAAAACA GGTCATGCCCTCATTATGAGCTACCGGGCCTTTCGGTACTGGATCGTGCT CAAGCCTCTCTTCGGCCACGACTTCTCCGCCATTAAAATCTCCCCCGTCT TGGACATTTACGAGAAGGACACCATGCGCATCATGACCGGTTATATGCTT TATGATTTGGTGGTTGAAATTGTCACTCCAGCCGTGTATGACTATGCGGT CCTGTTCCACCACGTGGCAGGCTTGCTCTCCCACTGGCACACGCTGCAAA CTGAAGACGTGGCCTCCGGGTGGTACACGATGATGGTTTACCTGGCCGAG GGGTCCACACCCATCCTTCACGCGGCGTGGATGATGAATACTGTGGGGCT TGCGGACGGCCTGGCCTTCAAGCTGTTGACGCTGGCGTTGCTCGTGGCGT TCTTTGTGGTGCGCATTCTAGTCTCGCCTCTATTAGCCTACACATACCTG GCCCCGGCCAATCGCCACTTGTACGACGGCCGGGACGGGGTCTTTTACTT CCAGCTGTGCATCGTCTTTGCCTTTGCTGGGTTGAACTTCTTCTGGTTCT ACAAGTTGTTAACCTTGGTATACCGGTACGTTTTTGGGGTTCTCTTTTTT GACCTCCCTCCCTCTCTCCCTCCTTCCCTTGGTTTAATCCTCCTTCTTGA GCCGGAAGGAAACTTCCAATTGTAAGACCCATCAGTCACTTACTCACGCC CTACCTTCCCCCTCCCTCCCTCTCTCCCTCTCTCCCTGTCTACAGCAAAG CCAGAGGCATCAAGAGCCCCATGACCTCGCCCGTCAAGCGACGACAAGAA CCTTCTTACTCATCAGGTAAATCCAAAAAGGCCGCATAGCACCCAGAAAA AAAAGGAACGGAAGGATGATTTGTGTCCATAAAAAATGGATGGGGGCGGA GAAGTGAAATGCTATAAAGTATCAGGAAGCAGATTGAGGAGGAAGAGGTG TGTTGATGGATGGACGGGAGGGAGGAAGGGAGGAAAGGTGTCGCACCCAC TCGTTATGCTCAAAAGAAGGTAGAGAAGAACACGATTGGGGACCAGGAGA GCGAAATAAGTAGATAATCAACATAAAGATAAAAATGCGGAAAAAGAGGA GGTGGATA
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Coding sequence (CDS) from alignment at chr11:865786..867443+

>NO11G02750.1 ID=NO11G02750.1|Name=NO11G02750.1|organism=Nannochloropsis oceanica|type=CDS|length=891bp|location=Sequence derived from alignment at chr11:865786..867443+ (Nannochloropsis oceanica)
ATGTACAAGGACTTGCTCTCCGGCCTCACCCGCTTCTACACGGCGGAGGC
CATCGACGGGGAGGCCCTATTTGGCATGCCGTTGCCCTTGGCACTGGGGT
ATGGGCTGCTGTGCACAATGTCCTTTTTTGGGAGTGGGATGGTGTTGCGC
CAGGTCTCGGCTACCTATCGGCGCTTGCCCAAGCAGGCCCGCACGGACTG
GGACAACCGCATGGTGGCTTTAGGTCATGCCCTCATTATGAGCTACCGGG
CCTTTCGGTACTGGATCGTGCTCAAGCCTCTCTTCGGCCACGACTTCTCC
GCCATTAAAATCTCCCCCGTCTTGGACATTTACGAGAAGGACACCATGCG
CATCATGACCGGTTATATGCTTTATGATTTGGTGGTTGAAATTGTCACTC
CAGCCGTGTATGACTATGCGGTCCTGTTCCACCACGTGGCAGGCTTGCTC
TCCCACTGGCACACGCTGCAAACTGAAGACGTGGCCTCCGGGTGGTACAC
GATGATGGTTTACCTGGCCGAGGGGTCCACACCCATCCTTCACGCGGCGT
GGATGATGAATACTGTGGGGCTTGCGGACGGCCTGGCCTTCAAGCTGTTG
ACGCTGGCGTTGCTCGTGGCGTTCTTTGTGGTGCGCATTCTAGTCTCGCC
TCTATTAGCCTACACATACCTGGCCCCGGCCAATCGCCACTTGTACGACG
GCCGGGACGGGGTCTTTTACTTCCAGCTGTGCATCGTCTTTGCCTTTGCT
GGGTTGAACTTCTTCTGGTTCTACAAGTTGTTAACCTTGGTATACCGCAA
AGCCAGAGGCATCAAGAGCCCCATGACCTCGCCCGTCAAGCGACGACAAG
AACCTTCTTACTCATCAGGTAAATCCAAAAAGGCCGCATAG
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Synonyms
Publications