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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:865786..867443 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G02750.1 vs.
Match: EWM24954.1 (lag1 and cln8 lipid-sensing domain containing protein [Nannochloropsis gaditana]) HSP 1 Score: 511.5 bits (1316), Expect = 1.700e-141 Identity = 249/295 (84.41%), Postives = 274/295 (92.88%), Query Frame = 0
Query: 1 MYKDLLSGLTRFYTAEAIDGEALFGMPLPLALGYGLLCTMSFFGSGMVLRQVSATYRRLPKQARTDWDNRMVALGHALIMSYRAFRYWIVLKPLFGHDFSAIKISPVLDIYEKDTMRIMTGYMLYDLVVEIVTPAVYDYAVLFHHVAGLLSHWHTLQTEDVASGWYTMMVYLAEGSTPILHAAWMMNTVGLADGLAFKLLTLALLVAFFVVRILVSPLLAYTYLAPANRHLYDGRDGVFYFQLCIVFAFAGLNFFWFYKLLTLVYRKARGIKSPMTSPVKRRQEPSYSSGKSKKA 296
MY+D+LSGL+RFYT E+IDGEALFG+ LPLAL YGLLCT SFFGSG+VL +VSATYRRLPKQARTDWDNRMVALGHA+IMSYRAFRYWIVLKPLFGH FS + I+P LD+YEKDTMRIM GYMLYDLVVE+ TPAVYDYAVLFHH+AG+LSHWHTLQT DVASGWYTM+VYLAEGSTPILH AWMMNTVGL+DG+AFKLLTLALLV FFVVRILVSPLLAYTYLAP NRHLYDGRDGVFYFQL IVFAFAGLN+FWFYKLLTL+YRKARGIK+P++SPVK+R +P+ KSKKA
Sbjct: 38 MYQDMLSGLSRFYTVESIDGEALFGIRLPLALAYGLLCTASFFGSGIVLGKVSATYRRLPKQARTDWDNRMVALGHAVIMSYRAFRYWIVLKPLFGHTFSLLSIAPALDMYEKDTMRIMIGYMLYDLVVELATPAVYDYAVLFHHLAGILSHWHTLQTNDVASGWYTMLVYLAEGSTPILHTAWMMNTVGLSDGVAFKLLTLALLVTFFVVRILVSPLLAYTYLAPGNRHLYDGRDGVFYFQLFIVFAFAGLNYFWFYKLLTLIYRKARGIKTPISSPVKKRSKPATEGSKSKKA 332
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G02750.1 ID=NO11G02750.1|Name=NO11G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1207bp ACAGGCAGCCAAGATCTCCCACAGGCCCTCCACCTTGTCCTACTACAATG TACAAGGACTTGCTCTCCGGCCTCACCCGCTTCTACACGGCGGAGGCCAT CGACGGGGAGGCCCTATTTGGCATGCCGTTGCCCTTGGCACTGGGGTATG GGCTGCTGTGCACAATGTCCTTTTTTGGGAGTGGGATGGTGTTGCGCCAG GTCTCGGCTACCTATCGGCGCTTGCCCAAGCAGGCCCGCACGGACTGGGA CAACCGCATGGTGGCTTTAGGTCATGCCCTCATTATGAGCTACCGGGCCT TTCGGTACTGGATCGTGCTCAAGCCTCTCTTCGGCCACGACTTCTCCGCC ATTAAAATCTCCCCCGTCTTGGACATTTACGAGAAGGACACCATGCGCAT CATGACCGGTTATATGCTTTATGATTTGGTGGTTGAAATTGTCACTCCAG CCGTGTATGACTATGCGGTCCTGTTCCACCACGTGGCAGGCTTGCTCTCC CACTGGCACACGCTGCAAACTGAAGACGTGGCCTCCGGGTGGTACACGAT GATGGTTTACCTGGCCGAGGGGTCCACACCCATCCTTCACGCGGCGTGGA TGATGAATACTGTGGGGCTTGCGGACGGCCTGGCCTTCAAGCTGTTGACG CTGGCGTTGCTCGTGGCGTTCTTTGTGGTGCGCATTCTAGTCTCGCCTCT ATTAGCCTACACATACCTGGCCCCGGCCAATCGCCACTTGTACGACGGCC GGGACGGGGTCTTTTACTTCCAGCTGTGCATCGTCTTTGCCTTTGCTGGG TTGAACTTCTTCTGGTTCTACAAGTTGTTAACCTTGGTATACCGCAAAGC CAGAGGCATCAAGAGCCCCATGACCTCGCCCGTCAAGCGACGACAAGAAC CTTCTTACTCATCAGGTAAATCCAAAAAGGCCGCATAGCACCCAGAAAAA AAAGGAACGGAAGGATGATTTGTGTCCATAAAAAATGGATGGGGGCGGAG AAGTGAAATGCTATAAAGTATCAGGAAGCAGATTGAGGAGGAAGAGGTGT GTTGATGGATGGACGGGAGGGAGGAAGGGAGGAAAGGTGTCGCACCCACT CGTTATGCTCAAAAGAAGGTAGAGAAGAACACGATTGGGGACCAGGAGAG CGAAATAAGTAGATAATCAACATAAAGATAAAAATGCGGAAAAAGAGGAG GTGGATA back to topprotein sequence of NO11G02750.1 >NO11G02750.1-protein ID=NO11G02750.1-protein|Name=NO11G02750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp MYKDLLSGLTRFYTAEAIDGEALFGMPLPLALGYGLLCTMSFFGSGMVLR QVSATYRRLPKQARTDWDNRMVALGHALIMSYRAFRYWIVLKPLFGHDFS AIKISPVLDIYEKDTMRIMTGYMLYDLVVEIVTPAVYDYAVLFHHVAGLL SHWHTLQTEDVASGWYTMMVYLAEGSTPILHAAWMMNTVGLADGLAFKLL TLALLVAFFVVRILVSPLLAYTYLAPANRHLYDGRDGVFYFQLCIVFAFA GLNFFWFYKLLTLVYRKARGIKSPMTSPVKRRQEPSYSSGKSKKAA* back to topmRNA from alignment at chr11:865786..867443+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G02750.1 ID=NO11G02750.1|Name=NO11G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1658bp|location=Sequence derived from alignment at chr11:865786..867443+ (Nannochloropsis oceanica) ACAGGCAGCCAAGATCTCCCACAGGCCCTCCACCTTGTCCTACTACAATG
TACAAGGACTTGCTCTCCGGCCTCACCCGCTTCTACACGGCGGAGGCCAT
CGACGGGGAGGCCCTATTTGGCATGCCGTTGCCCTTGGCACTGGGGTATG
GGCTGCTGTGCACAATGTCCTTTTTTGGGAGTGGGATGGTGTTGCGCCAG
GTCTCGGCTACCTATCGGCGCTTGCCCAAGCAGGCCCGCACGGACTGGGA
CAACCGCATGGTGGCTTTAGGTACGTGGATAACGGGAGAGGGATGATCAT
TTGCGGTGTTTCGAGGTTATTGTGTGTGTGTTTGTACTAATGTAAATAGG
TTGGATTGCTGCCACGCGTCACGCTGACGTACCCCCCTCTTCTTCCGGGA
TGTGCGCGCTTTGTCGTAATGGCACGCGGCAATGCTGCATACCATGCTGC
ATCCTTTTCATACCATCGCCAAGACTCACCAAATCCGCCATTCTCCTTCC
TCCCCTACTTCTTCTTTCACCCCGTCAAATAAATAAAATAAAATAAAACA
GGTCATGCCCTCATTATGAGCTACCGGGCCTTTCGGTACTGGATCGTGCT
CAAGCCTCTCTTCGGCCACGACTTCTCCGCCATTAAAATCTCCCCCGTCT
TGGACATTTACGAGAAGGACACCATGCGCATCATGACCGGTTATATGCTT
TATGATTTGGTGGTTGAAATTGTCACTCCAGCCGTGTATGACTATGCGGT
CCTGTTCCACCACGTGGCAGGCTTGCTCTCCCACTGGCACACGCTGCAAA
CTGAAGACGTGGCCTCCGGGTGGTACACGATGATGGTTTACCTGGCCGAG
GGGTCCACACCCATCCTTCACGCGGCGTGGATGATGAATACTGTGGGGCT
TGCGGACGGCCTGGCCTTCAAGCTGTTGACGCTGGCGTTGCTCGTGGCGT
TCTTTGTGGTGCGCATTCTAGTCTCGCCTCTATTAGCCTACACATACCTG
GCCCCGGCCAATCGCCACTTGTACGACGGCCGGGACGGGGTCTTTTACTT
CCAGCTGTGCATCGTCTTTGCCTTTGCTGGGTTGAACTTCTTCTGGTTCT
ACAAGTTGTTAACCTTGGTATACCGGTACGTTTTTGGGGTTCTCTTTTTT
GACCTCCCTCCCTCTCTCCCTCCTTCCCTTGGTTTAATCCTCCTTCTTGA
GCCGGAAGGAAACTTCCAATTGTAAGACCCATCAGTCACTTACTCACGCC
CTACCTTCCCCCTCCCTCCCTCTCTCCCTCTCTCCCTGTCTACAGCAAAG
CCAGAGGCATCAAGAGCCCCATGACCTCGCCCGTCAAGCGACGACAAGAA
CCTTCTTACTCATCAGGTAAATCCAAAAAGGCCGCATAGCACCCAGAAAA
AAAAGGAACGGAAGGATGATTTGTGTCCATAAAAAATGGATGGGGGCGGA
GAAGTGAAATGCTATAAAGTATCAGGAAGCAGATTGAGGAGGAAGAGGTG
TGTTGATGGATGGACGGGAGGGAGGAAGGGAGGAAAGGTGTCGCACCCAC
TCGTTATGCTCAAAAGAAGGTAGAGAAGAACACGATTGGGGACCAGGAGA
GCGAAATAAGTAGATAATCAACATAAAGATAAAAATGCGGAAAAAGAGGA
GGTGGATA back to topCoding sequence (CDS) from alignment at chr11:865786..867443+ >NO11G02750.1 ID=NO11G02750.1|Name=NO11G02750.1|organism=Nannochloropsis oceanica|type=CDS|length=891bp|location=Sequence derived from alignment at chr11:865786..867443+ (Nannochloropsis oceanica) ATGTACAAGGACTTGCTCTCCGGCCTCACCCGCTTCTACACGGCGGAGGC CATCGACGGGGAGGCCCTATTTGGCATGCCGTTGCCCTTGGCACTGGGGT ATGGGCTGCTGTGCACAATGTCCTTTTTTGGGAGTGGGATGGTGTTGCGC CAGGTCTCGGCTACCTATCGGCGCTTGCCCAAGCAGGCCCGCACGGACTG GGACAACCGCATGGTGGCTTTAGGTCATGCCCTCATTATGAGCTACCGGG CCTTTCGGTACTGGATCGTGCTCAAGCCTCTCTTCGGCCACGACTTCTCC GCCATTAAAATCTCCCCCGTCTTGGACATTTACGAGAAGGACACCATGCG CATCATGACCGGTTATATGCTTTATGATTTGGTGGTTGAAATTGTCACTC CAGCCGTGTATGACTATGCGGTCCTGTTCCACCACGTGGCAGGCTTGCTC TCCCACTGGCACACGCTGCAAACTGAAGACGTGGCCTCCGGGTGGTACAC GATGATGGTTTACCTGGCCGAGGGGTCCACACCCATCCTTCACGCGGCGT GGATGATGAATACTGTGGGGCTTGCGGACGGCCTGGCCTTCAAGCTGTTG ACGCTGGCGTTGCTCGTGGCGTTCTTTGTGGTGCGCATTCTAGTCTCGCC TCTATTAGCCTACACATACCTGGCCCCGGCCAATCGCCACTTGTACGACG GCCGGGACGGGGTCTTTTACTTCCAGCTGTGCATCGTCTTTGCCTTTGCT GGGTTGAACTTCTTCTGGTTCTACAAGTTGTTAACCTTGGTATACCGCAA AGCCAGAGGCATCAAGAGCCCCATGACCTCGCCCGTCAAGCGACGACAAG AACCTTCTTACTCATCAGGTAAATCCAAAAAGGCCGCATAG back to top
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