NO11G02700, NO11G02700 (gene) Nannochloropsis oceanica

Overview
NameNO11G02700
Unique NameNO11G02700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2505
Alignment locationchr11:850275..852779 -

Link to JBrowse

Properties
Property NameValue
DescriptionPentatricopeptide repeat containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:850275..852779 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
Homology
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BLAST of NO11G02700 vs. NCBI_GenBank
Match: EWM24951.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 387.5 bits (994), Expect = 1.000e-103
Identity = 273/741 (36.84%), Postives = 384/741 (51.82%), Query Frame = 0 
Query:   83 RAWKYVRDACNRHEFTRAFDLLHRNQGQARDYRYVIQACMEAHQLDAVGQAVLDGLRRSGNXXXXXXXXXXXXXXXXXXXXXEAAGQERALPKGIRPVDLINQLLDSHSKAGRFEQAWLLFEDVIEPL--PASSQPTTISTAAARRAHSSSRSN-------SCSTDIQQPS--RALLRPSPKTYSILLTGCARWNKNVEAMFLVKDAAKRNVPLTEGSLLCAMQACANAGDSQNARQIMREMEARNVAIPRPSLQRLLVAQALRGEVKANEDLLEALGRGTPGGEVGGDNGRGGDIRVAEYVCAGFHARALEAYDALLPXXXXXXXXXXXXXXLTAATALKDAKKVAEVLEEMEARLNSGDEGGVIVGPTELGLACRVLRREEVDWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRCLEVVGRLISRSNILFLNSTYAQALLRAGREEEARKLSERLLAHRMGEGESPAWKQLTSYASQMVALGVLGQWPVAHYLYDEMRCRPGSRLAGRDLFLLRALMKAYQMEEERAELAASSSNDSSNGKTV--LHDMALKAYQHAYAEGYVDHWSTKRPQMMDVHRYSLYLARLAVETVLQDLLAKPWPKAVGRGGKGGGIGRGEGGRASATSLRDLWIVTGAGKHDNTFRIGVSETSFKPLANFQSTT-----VDSVDRQEENSNPY-NMTLRNKLARVLALEHGLFSAEDLEHL-SERGDGRLRIRKEAIRVWL 804
            R W+ +R++C++ +F +AF+LL R++  AR+Y YVI AC+ A QLD +    L+G+R++                            ER+LP G+R   L+++LL +H + G FE+AW L+  +  P+    S++P     AA       S+ N       S  +    P    ALL P+ KT+SILL  C RW K VEA  LV DA +  V LT      A+ AC +AGDS+N   IM++M  R + + R + Q LL A  +RGE +A E LLE++ +    G+          +R  +YV AG   +A  A+DA+                LTA +ALKDA ++  VLEE+E  L  G   G+ VGPTE GLACR+ R+ E                                           RCL+V+ RL  RS I FLN TY +AL+  GREEEARK  +R LA RM        + + SYASQ+ ALG LG WPVAHYLYDEMR         R++   R+L+  Y+ EE+R    A+    ++ GK V  LH +AL  Y+     G+++HW   R ++MD+HRYSLYLA LAVE VL D+ ++    +      G          A +   +DLW++TG GKH N+ R+ ++ TS +P A+  S T     VD  D ++ N     +M LR+KLAR LA++HGL +  DL  L S+   GRL IRKEAI+ W+
Sbjct:   98 REWQKIRESCSQSDFEQAFELLQRSKAGAREYNYVIYACLAARQLDFLEDVALEGVRQA------RTRRQGSRNDQNSLEDDTGCRTERSLPMGVRLDGLVHRLLLAHIRNGCFERAWRLYRRLAAPVSNTLSTEPWARDNAANTALSQRSQPNGLPLAGASSISPAPPPGSLSALLPPTLKTFSILLRACTRWRKGVEAKSLVSDADEYRVDLTRADFEQAISACGSAGDSRNVEWIMKKMTERGMPVSREAQQSLLNAHFIRGESRAGEALLESMTKA--AGQ--------ASLRTQDYVSAGLFNKAFTAFDAV---SVPVRKQEDYVAMLTAVSALKDAPRMVNVLEELERGLREG-RAGLTVGPTEFGLACRIFRKAE----------------GQELLEETRQEKGRVGARRRRMGAEEMRCLDVLARLGDRSGIPFLNKTYVEALIETGREEEARKRLDRWLAKRM----ERRGRHVVSYASQIGALGALGLWPVAHYLYDEMRFLAPHGSWEREIQSFRSLLGVYETEEKR----AARCPGAARGKIVDALHGLALATYKEGIRRGHLNHWHPSREKVMDLHRYSLYLAVLAVEVVLMDMASE---SSHAENKMGPRNSHELAAHALSIPAQDLWVITGRGKH-NSSRL-INATSSRPNAHGPSYTAGPMHVDETDERQRNMETLSHMRLRDKLARALAMQHGLLTEIDLRRLRSDNNCGRLCIRKEAIQTWI 789
The following BLAST results are available for this feature:
BLAST of NO11G02700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24951.11.000e-10336.84Pentatricopeptide repeat containing protein [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL112nonsL112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR020ngnoR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001992NSK001992Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02700.1NO11G02700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591603gene_5168Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100086g25gene5545Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02700.1NO11G02700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02700 ID=NO11G02700|Name=NO11G02700|organism=Nannochloropsis oceanica|type=gene|length=2505bp
ATGCTTCGATCTCTAGACCGCACCTTGCGGCGGCAGGCGAAGCATTTGAA
AGCGGTGACCACCACACCGCGGCAGGCCTTGTCATCGTCTTCATCTCTTG
CCCCTGCCTCGACCAATGCTACCTCCACTGCAACTGCCGCGTCCTCCCCA
GAACTAGTTTCCACCGCCGAAGTTGCGAGTATCGAAAGCACGAGCAGTGC
CAACAGCAGCCCTCACACTCTGAATAGAAGGGGTGTTGCCCCTATGCGTG
CCTGGAAATACGTCCGAGACGCTTGTAACCGGCACGAGTTCACGCGCGCC
TTCGACCTCCTCCACCGCAACCAGGGCCAAGCCCGTGATTACAGATATGT
GATTCAAGCGTGTATGGAAGCCCATCAATTAGACGCCGTGGGACAGGCCG
TGTTGGATGGGTTGAGGCGGTCGGGGAATGGCTCCGCATCCATCGAAAGA
AACGATGGAGAGGGAAAAGGAAAGGGAAGAGGAGCAGCAGGAGAAGCTGC
AGGACAAGAGAGAGCCTTACCAAAAGGAATTCGACCGGTAGATCTAATAA
ATCAATTGTTGGATTCACATAGCAAGGCGGGGAGATTCGAGCAGGCTTGG
TTGCTCTTCGAAGACGTCATCGAGCCTCTCCCAGCATCCTCCCAACCCAC
TACTATTTCTACAGCTGCCGCGAGGAGAGCCCACAGCAGCAGCAGAAGCA
ATAGCTGCAGTACCGACATCCAACAGCCCTCCCGCGCCCTGCTTCGTCCC
TCCCCCAAGACTTACTCGATCCTCCTTACCGGCTGCGCCCGATGGAACAA
AAATGTGGAAGCCATGTTTCTCGTCAAGGATGCTGCCAAACGCAACGTCC
CCCTCACCGAAGGCAGTCTCCTGTGCGCCATGCAAGCCTGTGCCAACGCT
GGGGATTCCCAAAACGCGCGTCAGATTATGCGAGAGATGGAAGCAAGAAA
TGTGGCCATCCCTCGTCCCTCACTCCAACGGCTACTCGTCGCCCAAGCCC
TGCGCGGTGAAGTGAAAGCAAACGAGGATCTTCTTGAGGCCCTTGGCCGA
GGAACACCAGGAGGAGAAGTAGGTGGTGATAATGGGAGGGGAGGAGACAT
ACGTGTCGCTGAATATGTGTGTGCGGGCTTCCATGCCCGAGCCTTGGAGG
CTTATGACGCTCTCCTCCCTCCTCCTGGAGGGGGACGGCAGAGGGAGGAT
TACGCAGCAGCGCTGACGGCAGCAACGGCTTTGAAGGACGCGAAAAAGGT
GGCGGAAGTGTTGGAAGAGATGGAGGCGAGGCTAAATAGTGGCGATGAGG
GAGGGGTGATTGTTGGACCGACTGAGTTGGGCTTGGCGTGCCGTGTTCTC
AGGAGGGAGGAGGTTGACTGGGAGGAGGAGGAAGAGGGAGGGGAAGAACG
GAAGACAGAAGGTGACGCTGCTGCTGGATCTGTTCAAAGTGAAGAGGAGA
GGGGGGAAGGTGATGAGAATGAGAAGCAGATGCAGCAACGGCGGTGCTTG
GAGGTGGTGGGTCGCCTGATTTCCCGGTCGAATATTCTCTTCCTAAACAG
CACGTACGCGCAGGCCTTGCTCAGGGCCGGGAGGGAGGAAGAGGCGAGGA
AATTGAGCGAGCGGTTATTGGCGCACCGGATGGGAGAGGGGGAAAGCCCG
GCGTGGAAGCAATTGACGTCCTATGCCTCGCAGATGGTGGCGTTGGGAGT
ATTGGGGCAATGGCCTGTGGCCCATTATTTGTACGACGAGATGCGATGTC
GCCCGGGGAGTAGGCTCGCCGGGCGGGACCTCTTCCTGTTGCGGGCGTTG
ATGAAGGCGTACCAGATGGAGGAGGAGCGAGCAGAGCTTGCAGCGAGCAG
CAGCAACGACAGCAGCAACGGCAAGACGGTGTTGCACGATATGGCCTTAA
AGGCTTACCAGCACGCGTATGCTGAAGGCTACGTGGACCATTGGAGTACC
AAAAGACCGCAGATGATGGACGTGCATCGGTATTCACTCTATCTGGCACG
ATTGGCGGTAGAAACGGTTTTGCAGGACCTGTTGGCCAAGCCCTGGCCAA
AAGCAGTCGGAAGGGGAGGGAAGGGAGGAGGAATAGGAAGAGGAGAAGGA
GGCAGGGCATCGGCTACGTCCCTCCGAGATTTGTGGATAGTGACCGGGGC
GGGAAAGCATGATAACACCTTTCGCATCGGCGTTTCTGAGACTTCTTTCA
AGCCCCTTGCAAATTTTCAGTCCACGACGGTCGACAGCGTGGACAGACAG
GAGGAAAACTCGAACCCCTACAACATGACCTTACGGAACAAGCTCGCAAG
GGTCTTAGCCTTGGAGCATGGTCTCTTTTCAGCGGAGGATCTCGAGCATC
TTTCAGAACGAGGAGATGGACGTTTGCGAATTCGCAAGGAGGCCATCAGG
GTGTGGTTGGCGAGGAGAAGGGAATGTCAAAAGGGAGACCAGCTGAAGAA
GACTGAAGAGCCGAAGCGACAGAGGGTGGTGATGAAAAAGGAGTTGGTCT
GGTAA
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protein sequence of NO11G02700.1

>NO11G02700.1-protein ID=NO11G02700.1-protein|Name=NO11G02700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=835bp
MLRSLDRTLRRQAKHLKAVTTTPRQALSSSSSLAPASTNATSTATAASSP
ELVSTAEVASIESTSSANSSPHTLNRRGVAPMRAWKYVRDACNRHEFTRA
FDLLHRNQGQARDYRYVIQACMEAHQLDAVGQAVLDGLRRSGNGSASIER
NDGEGKGKGRGAAGEAAGQERALPKGIRPVDLINQLLDSHSKAGRFEQAW
LLFEDVIEPLPASSQPTTISTAAARRAHSSSRSNSCSTDIQQPSRALLRP
SPKTYSILLTGCARWNKNVEAMFLVKDAAKRNVPLTEGSLLCAMQACANA
GDSQNARQIMREMEARNVAIPRPSLQRLLVAQALRGEVKANEDLLEALGR
GTPGGEVGGDNGRGGDIRVAEYVCAGFHARALEAYDALLPPPGGGRQRED
YAAALTAATALKDAKKVAEVLEEMEARLNSGDEGGVIVGPTELGLACRVL
RREEVDWEEEEEGGEERKTEGDAAAGSVQSEEERGEGDENEKQMQQRRCL
EVVGRLISRSNILFLNSTYAQALLRAGREEEARKLSERLLAHRMGEGESP
AWKQLTSYASQMVALGVLGQWPVAHYLYDEMRCRPGSRLAGRDLFLLRAL
MKAYQMEEERAELAASSSNDSSNGKTVLHDMALKAYQHAYAEGYVDHWST
KRPQMMDVHRYSLYLARLAVETVLQDLLAKPWPKAVGRGGKGGGIGRGEG
GRASATSLRDLWIVTGAGKHDNTFRIGVSETSFKPLANFQSTTVDSVDRQ
EENSNPYNMTLRNKLARVLALEHGLFSAEDLEHLSERGDGRLRIRKEAIR
VWLARRRECQKGDQLKKTEEPKRQRVVMKKELVW*
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Synonyms
Publications