NO11G02640, NO11G02640 (gene) Nannochloropsis oceanica

Overview
NameNO11G02640
Unique NameNO11G02640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2162
Alignment locationchr11:820714..822875 +

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Properties
Property NameValue
DescriptionPentapeptide repeat protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:820714..822875 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR0016465peptide_repeat
Homology
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BLAST of NO11G02640 vs. NCBI_GenBank
Match: XP_005852753.1 (pentapeptide repeat protein [Nannochloropsis gaditana CCMP526] >EKU23080.1 pentapeptide repeat protein [Nannochloropsis gaditana CCMP526] >EWM24950.1 pentapeptide repeat protein [Nannochloropsis gaditana])

HSP 1 Score: 89.7 bits (221), Expect = 1.200e-14
Identity = 163/220 (74.09%), Postives = 177/220 (80.45%), Query Frame = 0 
Query:    6 LQPLLLVVVAYCLAIRAFVVPIPASSSXXXXXXXXXXXXXXXXXXXXXXXFLSPLRRLLSFAPALVLGPLLPAALDVPSAHAISGGGKDYAEAKIADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRFVQKKLCEKASGTNPKTRVDTRESLLCD 226
            LQP +L ++  C+++++FVV     SS                        +  +RRLLSFAP L+LGP     LDVP+AHAISGGGKDYAEAKIADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  DRFVQKKLCEKA+GTNPKT+VDTRESLLCD
Sbjct:    5 LQPAMLFLLISCISVQSFVVRGKMPSS---CRRTTVAISSASSSLPSSNPIIISIRRLLSFAPILLLGPF----LDVPTAHAISGGGKDYAEAKIADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDRFVQKKLCEKATGTNPKTKVDTRESLLCD 217
The following BLAST results are available for this feature:
BLAST of NO11G02640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852753.11.200e-1474.09pentapeptide repeat protein [Nannochloropsis gadit... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL112nonsL112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR020ngnoR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001986NSK001986Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02640.1NO11G02640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591584gene_5160Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100086g16gene5551Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02640.1NO11G02640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02640 ID=NO11G02640|Name=NO11G02640|organism=Nannochloropsis oceanica|type=gene|length=2162bp
GTAGTAAATGCGTGGGAGCTCCAGTAGTAAATGCGTGGGAGCTCCAGTCG
GTAGGGGGAAAAAAAAGAAGCTTGCCGCATGTGTCACGGTGCCGGCGATT
TCCAGTGGTGTTGCTCATTGAAGCCGTAACAAACACGCAGACAAATTCGA
CAGCTCCACCACAGCTACCAGCACCATCAGGACAAGGGTGAGGAGGGTAT
TAAGACAGAGCTTGCCCTTCTTGTGGGCATCGTGTCCTGTGTAGCTCATG
TCGTCGTGTACATTCAACAAAGTTGCTTGCTGAGGATCACCTGCCTCAAC
ACACAATCGCTCATCACAACACGCATACCGACACACACAGGCCCCAAGAC
CATGCCTCCCGCAAAGCTTCAACCACTGCTGCTGGTGGTTGTGGCCTATT
GTCTGGCTATTCGTGCTTTTGTAGTCCCCATACCGGCGTCTTCGTCCTGC
GCGAGgtacgtgtgcattgtgctgctctggaacccgcttccagacgctcg
acctacccaaaactttgcccataccaaaatagGAAATTCAGCATGTCTGC
ATCTTCTTCTGTTTCCTTCTCTTCCTCCTCCTCTACCTCTGCCTTTCTTT
CCCCGCTTCGTCGTCTCCTGAGCTTTGCCCCAGCCCTTGTGCTTGGCCCC
CTTCTTCCCGCTGCCTTGGACGTGCCTTCCGCCCATGCTATTTCGGGGGG
TGGCAAGGATTACGCGGAGGCCAAAATTGCGGACCAAGACTTCAGTGGCA
AGGATTATAGTAATAAAGATTTTTCCGGCGCCTTCGCGgtaggtactgca
gtgtgaagaccttaagaagtgggaagtggagtggaaacgagggtggggag
gtatggcgagcagaaggatggggttggaatggaaggaggacaaaagaaga
ctgggtaacataattccatcacaaacatgcatgtgcacacccacaccctt
cacacacatacacacacacacacacacatacacacacatcccataacagC
AACGGACAAACTTCAAGGGTGCCAAGCTCATGGGCGCTCGCTTCTACAAA
TCGGCACTGACGGAGGCTGACTTCACGGgtacgttgcgattcttttcttt
ccttgtctctaggctctatcaattgcttgggtgcacagaatagagtacca
aggaaattttccctccctccctctcgccctccctccctctcgccctccct
ctcaccctcccaccctcccaccctccccccttaccttacttccagGTGCG
GACCTTTCAGGCGCATCCTTCGAAGGCGCGAACATGGTTGACACTATCTT
AAAGGATGCTGTTATCAACAACGGCTACTTTACCGAAACGGTTGTGAAGG
TGGGAAGCATTGAGGGGGCGGATTTCTCAGATACGTTGCTCGATCGCTTC
GTACAGAAGAAGCTGTGTGAGAAGGCGTCAGGCACCAACCCGAAGACAAG
AGTGGACACACGAGAGTCCTTGCTGTGTGACTGAGGAGAGAAGGAAGAGA
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGAAGGACGACGACGACGACGATGATGACGAATGAAAAGGAAGTAGGTT
GGAGGGGGTTTTGTGGACGGTGAGCAGCAAGGTACGCTTACTTTACTTGC
ATAAAGGCTGCAAGAAAAGTAGAATGAAGTGTGGCTACGTCCATGAAAGG
TATGAAGGTATAATGAAATAGATGAAGGAAACACACGATAAAACGCCGTA
TGTATGTATGCAACTCATACACAGACCAAAGGGCTGAGGCTAGCAACAAT
GTCGGCTGGCCGTTCCACCTCCTCCGTCTTCTCGAAGTTTTGTCCGCCTG
CCTGATCCGATATCATGATTACCCCCCCACACAAGCGCCAATTCCACCGC
CAGAAAAATAGGGGAGCGGTATCTCCATCCATACACCCCTTTTCCGTTAC
CGTGCGTTATTTCTTTGATTTTTCGAAATTAGCTGCTTTCTGTCTTATCA
ATGCCTCGACCGATCAACACTTTTTACCACAGTCCCTCCCTCCTTCCTTC
TCTCCCTCCCCTCACACCCTCTGGTAAAACAGGAGGTACACTTCCTTCGT
CCATCCCCTCACCTGCCCCTCTTGTACGCTCTCCACCCTCTCATCATCAT
ATGCGTACCACT
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protein sequence of NO11G02640.1

>NO11G02640.1-protein ID=NO11G02640.1-protein|Name=NO11G02640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MPPAKLQPLLLVVVAYCLAIRAFVVPIPASSSCARKFSMSASSSVSFSSS
SSTSAFLSPLRRLLSFAPALVLGPLLPAALDVPSAHAISGGGKDYAEAKI
ADQDFSGKDYSNKDFSGAFAQRTNFKGAKLMGARFYKSALTEADFTGADL
SGASFEGANMVDTILKDAVINNGYFTETVVKVGSIEGADFSDTLLDRFVQ
KKLCEKASGTNPKTRVDTRESLLCD*
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Synonyms
Publications