NO11G02640.1, NO11G02640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02640.1
Unique NameNO11G02640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1707
Alignment locationchr11:820714..822875 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:820714..822875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02640.1 vs.
Match: XP_005852753.1 (pentapeptide repeat protein [Nannochloropsis gaditana CCMP526]; EKU23080.1 pentapeptide repeat protein [Nannochloropsis gaditana CCMP526]; EWM24950.1 pentapeptide repeat protein [Nannochloropsis gaditana])

HSP 1 Score: 295.0 bits (754), Expect = 1.900e-76
Identity = 165/220 (75.00%), Postives = 185/220 (84.09%), Query Frame = 0 
Query:    6 LQPLLLVVVAYCLAIRAFVVPIPASSSCARKFSMSASSSVSFSSSSSTSAFLSPLRRLLSFAPALVLGPLLPAALDVPSAHAISGGGKDYAEAKIADQDFSGKDYSNKDFSGAFAQRTNFKGAKLMGARFYKSALTEADFTGADLSGASFEGANMVDTILKDAVINNGYFTETVVKVGSIEGADFSDTLLDRFVQKKLCEKASGTNPKTRVDTRESLLCD 226
            LQP +L ++  C+++++FVV     SSC R  +  A SS S S  SS    +S +RRLLSFAP L+LGP L    DVP+AHAISGGGKDYAEAKIADQDFSGKD+S KDFSGAFAQR NFKGAKLMGARFYKSALTEADFTGADL+ ASFEGANMVD ILKDA++NN YFTETV+KVGSIEGADFSDTLLDRFVQKKLCEKA+GTNPKT+VDTRESLLCD
Sbjct:    5 LQPAMLFLLISCISVQSFVVRGKMPSSCRR--TTVAISSASSSLPSSNPIIIS-IRRLLSFAPILLLGPFL----DVPTAHAISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGANMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLCEKATGTNPKTKVDTRESLLCD 217
The following BLAST results are available for this feature:
BLAST of NO11G02640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852753.11.900e-7675.00pentapeptide repeat protein [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02640NO11G02640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02640.1NO11G02640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02640.1.cds1NO11G02640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02640.1.cds2NO11G02640.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02640.1.cds3NO11G02640.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02640.1.cds4NO11G02640.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02640.1 ID=NO11G02640.1|Name=NO11G02640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1707bp
GTAGTAAATGCGTGGGAGCTCCAGTAGTAAATGCGTGGGAGCTCCAGTCG
GTAGGGGGAAAAAAAAGAAGCTTGCCGCATGTGTCACGGTGCCGGCGATT
TCCAGTGGTGTTGCTCATTGAAGCCGTAACAAACACGCAGACAAATTCGA
CAGCTCCACCACAGCTACCAGCACCATCAGGACAAGGGTGAGGAGGGTAT
TAAGACAGAGCTTGCCCTTCTTGTGGGCATCGTGTCCTGTGTAGCTCATG
TCGTCGTGTACATTCAACAAAGTTGCTTGCTGAGGATCACCTGCCTCAAC
ACACAATCGCTCATCACAACACGCATACCGACACACACAGGCCCCAAGAC
CATGCCTCCCGCAAAGCTTCAACCACTGCTGCTGGTGGTTGTGGCCTATT
GTCTGGCTATTCGTGCTTTTGTAGTCCCCATACCGGCGTCTTCGTCCTGC
GCGAGGAAATTCAGCATGTCTGCATCTTCTTCTGTTTCCTTCTCTTCCTC
CTCCTCTACCTCTGCCTTTCTTTCCCCGCTTCGTCGTCTCCTGAGCTTTG
CCCCAGCCCTTGTGCTTGGCCCCCTTCTTCCCGCTGCCTTGGACGTGCCT
TCCGCCCATGCTATTTCGGGGGGTGGCAAGGATTACGCGGAGGCCAAAAT
TGCGGACCAAGACTTCAGTGGCAAGGATTATAGTAATAAAGATTTTTCCG
GCGCCTTCGCGCAACGGACAAACTTCAAGGGTGCCAAGCTCATGGGCGCT
CGCTTCTACAAATCGGCACTGACGGAGGCTGACTTCACGGGTGCGGACCT
TTCAGGCGCATCCTTCGAAGGCGCGAACATGGTTGACACTATCTTAAAGG
ATGCTGTTATCAACAACGGCTACTTTACCGAAACGGTTGTGAAGGTGGGA
AGCATTGAGGGGGCGGATTTCTCAGATACGTTGCTCGATCGCTTCGTACA
GAAGAAGCTGTGTGAGAAGGCGTCAGGCACCAACCCGAAGACAAGAGTGG
ACACACGAGAGTCCTTGCTGTGTGACTGAGGAGAGAAGGAAGAGAAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAA
GGACGACGACGACGACGATGATGACGAATGAAAAGGAAGTAGGTTGGAGG
GGGTTTTGTGGACGGTGAGCAGCAAGGTACGCTTACTTTACTTGCATAAA
GGCTGCAAGAAAAGTAGAATGAAGTGTGGCTACGTCCATGAAAGGTATGA
AGGTATAATGAAATAGATGAAGGAAACACACGATAAAACGCCGTATGTAT
GTATGCAACTCATACACAGACCAAAGGGCTGAGGCTAGCAACAATGTCGG
CTGGCCGTTCCACCTCCTCCGTCTTCTCGAAGTTTTGTCCGCCTGCCTGA
TCCGATATCATGATTACCCCCCCACACAAGCGCCAATTCCACCGCCAGAA
AAATAGGGGAGCGGTATCTCCATCCATACACCCCTTTTCCGTTACCGTGC
GTTATTTCTTTGATTTTTCGAAATTAGCTGCTTTCTGTCTTATCAATGCC
TCGACCGATCAACACTTTTTACCACAGTCCCTCCCTCCTTCCTTCTCTCC
CTCCCCTCACACCCTCTGGTAAAACAGGAGGTACACTTCCTTCGTCCATC
CCCTCACCTGCCCCTCTTGTACGCTCTCCACCCTCTCATCATCATATGCG
TACCACT
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protein sequence of NO11G02640.1

>NO11G02640.1-protein ID=NO11G02640.1-protein|Name=NO11G02640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MPPAKLQPLLLVVVAYCLAIRAFVVPIPASSSCARKFSMSASSSVSFSSS
SSTSAFLSPLRRLLSFAPALVLGPLLPAALDVPSAHAISGGGKDYAEAKI
ADQDFSGKDYSNKDFSGAFAQRTNFKGAKLMGARFYKSALTEADFTGADL
SGASFEGANMVDTILKDAVINNGYFTETVVKVGSIEGADFSDTLLDRFVQ
KKLCEKASGTNPKTRVDTRESLLCD*
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mRNA from alignment at chr11:820714..822875+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02640.1 ID=NO11G02640.1|Name=NO11G02640.1|organism=Nannochloropsis oceanica|type=mRNA|length=2162bp|location=Sequence derived from alignment at chr11:820714..822875+ (Nannochloropsis oceanica)
GTAGTAAATGCGTGGGAGCTCCAGTAGTAAATGCGTGGGAGCTCCAGTCG
GTAGGGGGAAAAAAAAGAAGCTTGCCGCATGTGTCACGGTGCCGGCGATT
TCCAGTGGTGTTGCTCATTGAAGCCGTAACAAACACGCAGACAAATTCGA
CAGCTCCACCACAGCTACCAGCACCATCAGGACAAGGGTGAGGAGGGTAT
TAAGACAGAGCTTGCCCTTCTTGTGGGCATCGTGTCCTGTGTAGCTCATG
TCGTCGTGTACATTCAACAAAGTTGCTTGCTGAGGATCACCTGCCTCAAC
ACACAATCGCTCATCACAACACGCATACCGACACACACAGGCCCCAAGAC
CATGCCTCCCGCAAAGCTTCAACCACTGCTGCTGGTGGTTGTGGCCTATT
GTCTGGCTATTCGTGCTTTTGTAGTCCCCATACCGGCGTCTTCGTCCTGC
GCGAGGTACGTGTGCATTGTGCTGCTCTGGAACCCGCTTCCAGACGCTCG
ACCTACCCAAAACTTTGCCCATACCAAAATAGGAAATTCAGCATGTCTGC
ATCTTCTTCTGTTTCCTTCTCTTCCTCCTCCTCTACCTCTGCCTTTCTTT
CCCCGCTTCGTCGTCTCCTGAGCTTTGCCCCAGCCCTTGTGCTTGGCCCC
CTTCTTCCCGCTGCCTTGGACGTGCCTTCCGCCCATGCTATTTCGGGGGG
TGGCAAGGATTACGCGGAGGCCAAAATTGCGGACCAAGACTTCAGTGGCA
AGGATTATAGTAATAAAGATTTTTCCGGCGCCTTCGCGGTAGGTACTGCA
GTGTGAAGACCTTAAGAAGTGGGAAGTGGAGTGGAAACGAGGGTGGGGAG
GTATGGCGAGCAGAAGGATGGGGTTGGAATGGAAGGAGGACAAAAGAAGA
CTGGGTAACATAATTCCATCACAAACATGCATGTGCACACCCACACCCTT
CACACACATACACACACACACACACACATACACACACATCCCATAACAGC
AACGGACAAACTTCAAGGGTGCCAAGCTCATGGGCGCTCGCTTCTACAAA
TCGGCACTGACGGAGGCTGACTTCACGGGTACGTTGCGATTCTTTTCTTT
CCTTGTCTCTAGGCTCTATCAATTGCTTGGGTGCACAGAATAGAGTACCA
AGGAAATTTTCCCTCCCTCCCTCTCGCCCTCCCTCCCTCTCGCCCTCCCT
CTCACCCTCCCACCCTCCCACCCTCCCCCCTTACCTTACTTCCAGGTGCG
GACCTTTCAGGCGCATCCTTCGAAGGCGCGAACATGGTTGACACTATCTT
AAAGGATGCTGTTATCAACAACGGCTACTTTACCGAAACGGTTGTGAAGG
TGGGAAGCATTGAGGGGGCGGATTTCTCAGATACGTTGCTCGATCGCTTC
GTACAGAAGAAGCTGTGTGAGAAGGCGTCAGGCACCAACCCGAAGACAAG
AGTGGACACACGAGAGTCCTTGCTGTGTGACTGAGGAGAGAAGGAAGAGA
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGAAGGACGACGACGACGACGATGATGACGAATGAAAAGGAAGTAGGTT
GGAGGGGGTTTTGTGGACGGTGAGCAGCAAGGTACGCTTACTTTACTTGC
ATAAAGGCTGCAAGAAAAGTAGAATGAAGTGTGGCTACGTCCATGAAAGG
TATGAAGGTATAATGAAATAGATGAAGGAAACACACGATAAAACGCCGTA
TGTATGTATGCAACTCATACACAGACCAAAGGGCTGAGGCTAGCAACAAT
GTCGGCTGGCCGTTCCACCTCCTCCGTCTTCTCGAAGTTTTGTCCGCCTG
CCTGATCCGATATCATGATTACCCCCCCACACAAGCGCCAATTCCACCGC
CAGAAAAATAGGGGAGCGGTATCTCCATCCATACACCCCTTTTCCGTTAC
CGTGCGTTATTTCTTTGATTTTTCGAAATTAGCTGCTTTCTGTCTTATCA
ATGCCTCGACCGATCAACACTTTTTACCACAGTCCCTCCCTCCTTCCTTC
TCTCCCTCCCCTCACACCCTCTGGTAAAACAGGAGGTACACTTCCTTCGT
CCATCCCCTCACCTGCCCCTCTTGTACGCTCTCCACCCTCTCATCATCAT
ATGCGTACCACT
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Coding sequence (CDS) from alignment at chr11:820714..822875+

>NO11G02640.1 ID=NO11G02640.1|Name=NO11G02640.1|organism=Nannochloropsis oceanica|type=CDS|length=678bp|location=Sequence derived from alignment at chr11:820714..822875+ (Nannochloropsis oceanica)
ATGCCTCCCGCAAAGCTTCAACCACTGCTGCTGGTGGTTGTGGCCTATTG
TCTGGCTATTCGTGCTTTTGTAGTCCCCATACCGGCGTCTTCGTCCTGCG
CGAGGAAATTCAGCATGTCTGCATCTTCTTCTGTTTCCTTCTCTTCCTCC
TCCTCTACCTCTGCCTTTCTTTCCCCGCTTCGTCGTCTCCTGAGCTTTGC
CCCAGCCCTTGTGCTTGGCCCCCTTCTTCCCGCTGCCTTGGACGTGCCTT
CCGCCCATGCTATTTCGGGGGGTGGCAAGGATTACGCGGAGGCCAAAATT
GCGGACCAAGACTTCAGTGGCAAGGATTATAGTAATAAAGATTTTTCCGG
CGCCTTCGCGCAACGGACAAACTTCAAGGGTGCCAAGCTCATGGGCGCTC
GCTTCTACAAATCGGCACTGACGGAGGCTGACTTCACGGGTGCGGACCTT
TCAGGCGCATCCTTCGAAGGCGCGAACATGGTTGACACTATCTTAAAGGA
TGCTGTTATCAACAACGGCTACTTTACCGAAACGGTTGTGAAGGTGGGAA
GCATTGAGGGGGCGGATTTCTCAGATACGTTGCTCGATCGCTTCGTACAG
AAGAAGCTGTGTGAGAAGGCGTCAGGCACCAACCCGAAGACAAGAGTGGA
CACACGAGAGTCCTTGCTGTGTGACTGA
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Synonyms
Publications