NO11G02550, NO11G02550 (gene) Nannochloropsis oceanica

Overview
NameNO11G02550
Unique NameNO11G02550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2010
Alignment locationchr11:804010..806019 -

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Properties
Property NameValue
DescriptionLipid droplet surface protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:804010..806019 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO11G02550 vs. NCBI_GenBank
Match: AFB75402.1 (lipid droplet surface protein [Nannochloropsis sp. CCMP1779])

HSP 1 Score: 295.0 bits (754), Expect = 1.300e-76
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0 
Query:    1 MAGPIMTSAPSATTPTGKTMPFKQPFKTVATLSAKTGNITKPIDPAISKTIDFVYNGYSTVKTKVDKAPKVNPYLLIAGGLVLSCIISMCLLVPAVIFFPVTIFLGVATSFALIALAPVAFVFGWILISSAPIQDKVVVPALDKVLANKKVAKFLLKE 159
            MAGPIMTSAPSATTPTGKTMPFKQPFKTVATLSAKTGNITKPIDPAISKTIDFVYNGYSTVKTKVDKAPKVNPYLLIAGGLVLSCIISMCLLVPAVIFFPVTIFLGVATSFALIALAPVAFVFGWILISSAPIQDKVVVPALDKVLANKKVAKFLLKE
Sbjct:    1 MAGPIMTSAPSATTPTGKTMPFKQPFKTVATLSAKTGNITKPIDPAISKTIDFVYNGYSTVKTKVDKAPKVNPYLLIAGGLVLSCIISMCLLVPAVIFFPVTIFLGVATSFALIALAPVAFVFGWILISSAPIQDKVVVPALDKVLANKKVAKFLLKE 158
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BLAST of NO11G02550 vs. NCBI_GenBank
Match: EWM24941.1 (lipid droplet surface protein [Nannochloropsis gaditana])

HSP 1 Score: 233.0 bits (593), Expect = 6.300e-58
Identity = 121/158 (76.58%), Postives = 139/158 (87.97%), Query Frame = 0 
Query:    1 MAGPIMTSAPSATTPTGKTMPFKQPFKTVATLSAKTGNITKPIDPAISKTIDFVYNGYSTVKTKVDKAPKVNPYLLIAGGLVLSCIISMCLLVPAVIFFPVTIFLGVATSFALIALAPVAFVFGWILISSAPIQDKVVVPALDKVLANKKVAKFLLKE 159
            MAGP+MTS+ SATTP G   PFKQPFK VATLS KTG ITKPIDPAISKT+DFVY+GY++VKT+VDKAPKVNPYLLIA GL LSC++S+ LL+PA++FFPVTIFLG+ATSFALIALAP   +  W+LISSAP+QDKVVVP LDKVL NKK+AK LLKE
Sbjct:   11 MAGPVMTSS-SATTPVGTVKPFKQPFKAVATLSQKTGQITKPIDPAISKTLDFVYSGYTSVKTQVDKAPKVNPYLLIAAGLFLSCVVSISLLIPAILFFPVTIFLGIATSFALIALAPAFLIVAWVLISSAPMQDKVVVPTLDKVLTNKKMAKILLKE 167
The following BLAST results are available for this feature:
BLAST of NO11G02550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
AFB75402.11.300e-76100.00lipid droplet surface protein [Nannochloropsis sp.... [more]
EWM24941.16.300e-5876.58lipid droplet surface protein [Nannochloropsis gad... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL112nonsL112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR020ngnoR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001977NSK001977Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02550.1NO11G02550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591558gene_5151Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100086g4gene5561Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02550.1NO11G02550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02550 ID=NO11G02550|Name=NO11G02550|organism=Nannochloropsis oceanica|type=gene|length=2010bp
CGATGTTGTTCGACGCGGTTTGCTTCGTCACAGTCGACGTGATTCAGGAA
TCTGGAGCCTGCAGATCATTTTTTTCAGCCTGATATCGTTCTTTTCCACT
GAGAACCATCAGACCACCTTTTCTTCCATTGTGTGAAGGAGTAGGAGTTG
CCGTGCTGCTTTGTGGGAGACATCTGCGATGGTGACCAGCCTCCCGTCGT
CTGGTCGACGTGACGAGCCTCTTCACTGTTCTTCGACGGAGAGACGCAAG
CGAGACGGCTCTAGACCTTTTGGACACGCATTCTGTGTGTGAACTAGTGG
ACAGTGATACCACGTCTGAAAGCTCACCACTGCCCATGGTGCAGCTACTT
GTCACAAAGTTTTGACTCCGTCGGTATCACCATTCGCGCTCGTGTGCCTG
GTTGTTCCGCCACGCCGGCCTGCCCCGGGGCGGGGCAATATTCTAAAATC
TCACGCAAAACACCGCACTTACCCCTCACACATATTCGTGATAGACCACC
ACCAATCTCAGCCCGCATCAACAATGGCCGGCCCCATCATGACCTCTGCG
CCCTCCGCGACCACGCCCACGGGCAAGACAATGCCGTTCAAGCAGCCTTT
CAAGACTGTGGCCACGCTGTCCGCCAAGACTGGCAACATTACCAAGCCCA
TCGACCCTGCCATCTCCAAGACCATTGACTTCGTCTACAATGGTTACTCG
gtaagtgctgattgtacaggtggagtaaagcgtggtgattgatatggatc
ataagaacatgaggaaatgcaggcgactgcaggcttctgctccgcagata
cgtgtgcctttcgacctctcggtgcgcaatgccagcatcagccttgaaaa
aaggatttgctaggatctttttgtgccatgcaccggtgcactttgagggc
gtgctagcgggtgctccgtgacagcccccacctgccgggatggaacatga
gaatttttcctacagaaacctgagaatttcgagatgcactccaaagccca
actcctctcatcatcattttgctctgcatttatcgctctcctctctcgtg
tggcagACGGTCAAGACCAAGGTTGACAAGGCCCCTAAGGTAAACCCCTA
CCTGCTCATTGCCGGCGGCCTCGTCCTCTCGTGCATCATCTCCATGTGCC
TGCTCGTCCCGGCCGTGATCTTCTTCCCCGTCACCATCTTCCTGGGTGTC
GCTACGTCGTTTGCGCTCATTGCATTGGCCCCCGTGGCTTTTGTGTTCGG
GTGGATCCTGATCTCCTCTGCTCCGATCCAGGATAAGGTGGTGGTGCCCG
CCTTGGACAAGGTGCTGGCCAATAAGAAGGTGGCGAAGTTCCTCCTCAAG
GAGTAAGAAAGATCCAAGAGAGACGAGTAGAGATTTTTTTTTTGGGATTG
ATGTTTGTCGTTCTTTGAGTTGTCGTCGAGTTACGCCTTTTGTAAGAATG
TTCCGCAGGAGAGGAGGAGGATGGGCATGAGTGAGGGTGAGAGGGCTTGC
CCGCTTTTTTTTTTAAAAACGCTGAAGACGTGGTTGTCAAACAAACCCCC
CATAGAAACGATTTTGTTACGGTGCGGTCCAGACGTCACTTGAATGGCTC
CGCGGAAAGGCCAGGGAGGGAAGGGGGGAGGGAGGAAACATGAAACATGT
TGAACGGCTCAACAGGGTTTGGGGGACAAGAGAGGTAGCGCCCTGATGGA
CTGCTCCCTCCCCTCCTTTCCCTCAATGTCTCATTCATCCATGCTTCCCC
CTTCTCTCTCTCCCCTCCGTTCCATCCCCCGCGGGCGTGGTAGTGGCGTG
ATGGGATCCACTAAAATGTACGTGTAAGAAAAGCCGGTGAGCTTACGCTT
TTGTGAAAGTGGGAGTACGAGTGTTGTGTGTGTGTGTAGTGGTTTCAGAC
CCCAGACAGAGGCGAAGCAGAAAAAGCAGACGATGAAGACGACGAAGAAA
TGAGCAGTCTATTTTTATCGTGGAAACAGAAGAGGTGATATCGTCTCGTT
CTTTGTTATC
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protein sequence of NO11G02550.1

>NO11G02550.1-protein ID=NO11G02550.1-protein|Name=NO11G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MAGPIMTSAPSATTPTGKTMPFKQPFKTVATLSAKTGNITKPIDPAISKT
IDFVYNGYSTVKTKVDKAPKVNPYLLIAGGLVLSCIISMCLLVPAVIFFP
VTIFLGVATSFALIALAPVAFVFGWILISSAPIQDKVVVPALDKVLANKK
VAKFLLKE*
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Synonyms
Publications