NO11G02550.1, NO11G02550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02550.1
Unique NameNO11G02550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1654
Alignment locationchr11:804010..806019 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:804010..806019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02550.1 vs.
Match: AFB75402.1 (lipid droplet surface protein [Nannochloropsis sp. CCMP1779])

HSP 1 Score: 295.0 bits (754), Expect = 1.300e-76
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0 
Query:    1 MAGPIMTSAPSATTPTGKTMPFKQPFKTVATLSAKTGNITKPIDPAISKTIDFVYNGYSTVKTKVDKAPKVNPYLLIAGGLVLSCIISMCLLVPAVIFFPVTIFLGVATSFALIALAPVAFVFGWILISSAPIQDKVVVPALDKVLANKKVAKFLLKE 159
            MAGPIMTSAPSATTPTGKTMPFKQPFKTVATLSAKTGNITKPIDPAISKTIDFVYNGYSTVKTKVDKAPKVNPYLLIAGGLVLSCIISMCLLVPAVIFFPVTIFLGVATSFALIALAPVAFVFGWILISSAPIQDKVVVPALDKVLANKKVAKFLLKE
Sbjct:    1 MAGPIMTSAPSATTPTGKTMPFKQPFKTVATLSAKTGNITKPIDPAISKTIDFVYNGYSTVKTKVDKAPKVNPYLLIAGGLVLSCIISMCLLVPAVIFFPVTIFLGVATSFALIALAPVAFVFGWILISSAPIQDKVVVPALDKVLANKKVAKFLLKE 158
The following BLAST results are available for this feature:
BLAST of NO11G02550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
AFB75402.11.300e-76100.00lipid droplet surface protein [Nannochloropsis sp.... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02550NO11G02550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02550.1NO11G02550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02550.1.cds1NO11G02550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02550.1.cds2NO11G02550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02550.1 ID=NO11G02550.1|Name=NO11G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1654bp
CGATGTTGTTCGACGCGGTTTGCTTCGTCACAGTCGACGTGATTCAGGAA
TCTGGAGCCTGCAGATCATTTTTTTCAGCCTGATATCGTTCTTTTCCACT
GAGAACCATCAGACCACCTTTTCTTCCATTGTGTGAAGGAGTAGGAGTTG
CCGTGCTGCTTTGTGGGAGACATCTGCGATGGTGACCAGCCTCCCGTCGT
CTGGTCGACGTGACGAGCCTCTTCACTGTTCTTCGACGGAGAGACGCAAG
CGAGACGGCTCTAGACCTTTTGGACACGCATTCTGTGTGTGAACTAGTGG
ACAGTGATACCACGTCTGAAAGCTCACCACTGCCCATGGTGCAGCTACTT
GTCACAAAGTTTTGACTCCGTCGGTATCACCATTCGCGCTCGTGTGCCTG
GTTGTTCCGCCACGCCGGCCTGCCCCGGGGCGGGGCAATATTCTAAAATC
TCACGCAAAACACCGCACTTACCCCTCACACATATTCGTGATAGACCACC
ACCAATCTCAGCCCGCATCAACAATGGCCGGCCCCATCATGACCTCTGCG
CCCTCCGCGACCACGCCCACGGGCAAGACAATGCCGTTCAAGCAGCCTTT
CAAGACTGTGGCCACGCTGTCCGCCAAGACTGGCAACATTACCAAGCCCA
TCGACCCTGCCATCTCCAAGACCATTGACTTCGTCTACAATGGTTACTCG
ACGGTCAAGACCAAGGTTGACAAGGCCCCTAAGGTAAACCCCTACCTGCT
CATTGCCGGCGGCCTCGTCCTCTCGTGCATCATCTCCATGTGCCTGCTCG
TCCCGGCCGTGATCTTCTTCCCCGTCACCATCTTCCTGGGTGTCGCTACG
TCGTTTGCGCTCATTGCATTGGCCCCCGTGGCTTTTGTGTTCGGGTGGAT
CCTGATCTCCTCTGCTCCGATCCAGGATAAGGTGGTGGTGCCCGCCTTGG
ACAAGGTGCTGGCCAATAAGAAGGTGGCGAAGTTCCTCCTCAAGGAGTAA
GAAAGATCCAAGAGAGACGAGTAGAGATTTTTTTTTTGGGATTGATGTTT
GTCGTTCTTTGAGTTGTCGTCGAGTTACGCCTTTTGTAAGAATGTTCCGC
AGGAGAGGAGGAGGATGGGCATGAGTGAGGGTGAGAGGGCTTGCCCGCTT
TTTTTTTTAAAAACGCTGAAGACGTGGTTGTCAAACAAACCCCCCATAGA
AACGATTTTGTTACGGTGCGGTCCAGACGTCACTTGAATGGCTCCGCGGA
AAGGCCAGGGAGGGAAGGGGGGAGGGAGGAAACATGAAACATGTTGAACG
GCTCAACAGGGTTTGGGGGACAAGAGAGGTAGCGCCCTGATGGACTGCTC
CCTCCCCTCCTTTCCCTCAATGTCTCATTCATCCATGCTTCCCCCTTCTC
TCTCTCCCCTCCGTTCCATCCCCCGCGGGCGTGGTAGTGGCGTGATGGGA
TCCACTAAAATGTACGTGTAAGAAAAGCCGGTGAGCTTACGCTTTTGTGA
AAGTGGGAGTACGAGTGTTGTGTGTGTGTGTAGTGGTTTCAGACCCCAGA
CAGAGGCGAAGCAGAAAAAGCAGACGATGAAGACGACGAAGAAATGAGCA
GTCTATTTTTATCGTGGAAACAGAAGAGGTGATATCGTCTCGTTCTTTGT
TATC
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protein sequence of NO11G02550.1

>NO11G02550.1-protein ID=NO11G02550.1-protein|Name=NO11G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MAGPIMTSAPSATTPTGKTMPFKQPFKTVATLSAKTGNITKPIDPAISKT
IDFVYNGYSTVKTKVDKAPKVNPYLLIAGGLVLSCIISMCLLVPAVIFFP
VTIFLGVATSFALIALAPVAFVFGWILISSAPIQDKVVVPALDKVLANKK
VAKFLLKE*
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mRNA from alignment at chr11:804010..806019-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02550.1 ID=NO11G02550.1|Name=NO11G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2010bp|location=Sequence derived from alignment at chr11:804010..806019- (Nannochloropsis oceanica)
CGATGTTGTTCGACGCGGTTTGCTTCGTCACAGTCGACGTGATTCAGGAA
TCTGGAGCCTGCAGATCATTTTTTTCAGCCTGATATCGTTCTTTTCCACT
GAGAACCATCAGACCACCTTTTCTTCCATTGTGTGAAGGAGTAGGAGTTG
CCGTGCTGCTTTGTGGGAGACATCTGCGATGGTGACCAGCCTCCCGTCGT
CTGGTCGACGTGACGAGCCTCTTCACTGTTCTTCGACGGAGAGACGCAAG
CGAGACGGCTCTAGACCTTTTGGACACGCATTCTGTGTGTGAACTAGTGG
ACAGTGATACCACGTCTGAAAGCTCACCACTGCCCATGGTGCAGCTACTT
GTCACAAAGTTTTGACTCCGTCGGTATCACCATTCGCGCTCGTGTGCCTG
GTTGTTCCGCCACGCCGGCCTGCCCCGGGGCGGGGCAATATTCTAAAATC
TCACGCAAAACACCGCACTTACCCCTCACACATATTCGTGATAGACCACC
ACCAATCTCAGCCCGCATCAACAATGGCCGGCCCCATCATGACCTCTGCG
CCCTCCGCGACCACGCCCACGGGCAAGACAATGCCGTTCAAGCAGCCTTT
CAAGACTGTGGCCACGCTGTCCGCCAAGACTGGCAACATTACCAAGCCCA
TCGACCCTGCCATCTCCAAGACCATTGACTTCGTCTACAATGGTTACTCG
GTAAGTGCTGATTGTACAGGTGGAGTAAAGCGTGGTGATTGATATGGATC
ATAAGAACATGAGGAAATGCAGGCGACTGCAGGCTTCTGCTCCGCAGATA
CGTGTGCCTTTCGACCTCTCGGTGCGCAATGCCAGCATCAGCCTTGAAAA
AAGGATTTGCTAGGATCTTTTTGTGCCATGCACCGGTGCACTTTGAGGGC
GTGCTAGCGGGTGCTCCGTGACAGCCCCCACCTGCCGGGATGGAACATGA
GAATTTTTCCTACAGAAACCTGAGAATTTCGAGATGCACTCCAAAGCCCA
ACTCCTCTCATCATCATTTTGCTCTGCATTTATCGCTCTCCTCTCTCGTG
TGGCAGACGGTCAAGACCAAGGTTGACAAGGCCCCTAAGGTAAACCCCTA
CCTGCTCATTGCCGGCGGCCTCGTCCTCTCGTGCATCATCTCCATGTGCC
TGCTCGTCCCGGCCGTGATCTTCTTCCCCGTCACCATCTTCCTGGGTGTC
GCTACGTCGTTTGCGCTCATTGCATTGGCCCCCGTGGCTTTTGTGTTCGG
GTGGATCCTGATCTCCTCTGCTCCGATCCAGGATAAGGTGGTGGTGCCCG
CCTTGGACAAGGTGCTGGCCAATAAGAAGGTGGCGAAGTTCCTCCTCAAG
GAGTAAGAAAGATCCAAGAGAGACGAGTAGAGATTTTTTTTTTGGGATTG
ATGTTTGTCGTTCTTTGAGTTGTCGTCGAGTTACGCCTTTTGTAAGAATG
TTCCGCAGGAGAGGAGGAGGATGGGCATGAGTGAGGGTGAGAGGGCTTGC
CCGCTTTTTTTTTTAAAAACGCTGAAGACGTGGTTGTCAAACAAACCCCC
CATAGAAACGATTTTGTTACGGTGCGGTCCAGACGTCACTTGAATGGCTC
CGCGGAAAGGCCAGGGAGGGAAGGGGGGAGGGAGGAAACATGAAACATGT
TGAACGGCTCAACAGGGTTTGGGGGACAAGAGAGGTAGCGCCCTGATGGA
CTGCTCCCTCCCCTCCTTTCCCTCAATGTCTCATTCATCCATGCTTCCCC
CTTCTCTCTCTCCCCTCCGTTCCATCCCCCGCGGGCGTGGTAGTGGCGTG
ATGGGATCCACTAAAATGTACGTGTAAGAAAAGCCGGTGAGCTTACGCTT
TTGTGAAAGTGGGAGTACGAGTGTTGTGTGTGTGTGTAGTGGTTTCAGAC
CCCAGACAGAGGCGAAGCAGAAAAAGCAGACGATGAAGACGACGAAGAAA
TGAGCAGTCTATTTTTATCGTGGAAACAGAAGAGGTGATATCGTCTCGTT
CTTTGTTATC
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Coding sequence (CDS) from alignment at chr11:804010..806019-

>NO11G02550.1 ID=NO11G02550.1|Name=NO11G02550.1|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at chr11:804010..806019- (Nannochloropsis oceanica)
ATGGCCGGCCCCATCATGACCTCTGCGCCCTCCGCGACCACGCCCACGGG
CAAGACAATGCCGTTCAAGCAGCCTTTCAAGACTGTGGCCACGCTGTCCG
CCAAGACTGGCAACATTACCAAGCCCATCGACCCTGCCATCTCCAAGACC
ATTGACTTCGTCTACAATGGTTACTCGACGGTCAAGACCAAGGTTGACAA
GGCCCCTAAGGTAAACCCCTACCTGCTCATTGCCGGCGGCCTCGTCCTCT
CGTGCATCATCTCCATGTGCCTGCTCGTCCCGGCCGTGATCTTCTTCCCC
GTCACCATCTTCCTGGGTGTCGCTACGTCGTTTGCGCTCATTGCATTGGC
CCCCGTGGCTTTTGTGTTCGGGTGGATCCTGATCTCCTCTGCTCCGATCC
AGGATAAGGTGGTGGTGCCCGCCTTGGACAAGGTGCTGGCCAATAAGAAG
GTGGCGAAGTTCCTCCTCAAGGAGTAA
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Synonyms
Publications