NO11G02320, NO11G02320 (gene) Nannochloropsis oceanica

Overview
NameNO11G02320
Unique NameNO11G02320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length348
Alignment locationchr11:745139..745486 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:745139..745486 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO11G02320 vs. NCBI_GenBank
Match: EWM24987.1 (hypothetical protein Naga_100122g4 [Nannochloropsis gaditana])

HSP 1 Score: 97.1 bits (240), Expect = 3.900e-17
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 0 
Query:   43 ASATGTGQNKLGEDFTDFAVPERAAATVGESLGFAALVLGVLAVAGVNTYYKIKSSPGGLPGYSQA 109
            A+  G G  KLGE FTDF VP R AATVGESLGF ALV+GVLA+AGV T++K+KSSP GLPGYSQA
Sbjct:   26 ANDAGGGHKKLGEGFTDFTVPRRPAATVGESLGFVALVVGVLALAGVTTHFKLKSSPNGLPGYSQA 91
The following BLAST results are available for this feature:
BLAST of NO11G02320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24987.13.900e-1772.73hypothetical protein Naga_100122g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002022NSK002022Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02320.1NO11G02320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591481gene_5127Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100122g4gene5515Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02320.1NO11G02320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02320 ID=NO11G02320|Name=NO11G02320|organism=Nannochloropsis oceanica|type=gene|length=348bp
ATGAAGCTCCGCAACCTGACCCTCTTACACCTCCTGGTTATCTTCGTGGG
ATTTGCCTGCCTCTTTTCCAGCACCACAGTCGCAGACTCAGCCCCCGCTG
CTCCCAGTACCCCCACTGATTCCGCTGCCTCTGCTACTGGGACTGGGCAA
AATAAGCTGGGGGAGGATTTTACCGACTTTGCCGTGCCCGAGCGAGCAGC
AGCTACCGTGGGCGAGAGCTTGGGCTTTGCGGCCTTGGTTCTGGGGGTGT
TGGCGGTAGCGGGTGTGAACACGTATTACAAGATCAAGAGCAGCCCGGGT
GGTTTGCCGGGGTATAGTCAGGCGATTTATATGCGGGAACAACAATAA
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protein sequence of NO11G02320.1

>NO11G02320.1-protein ID=NO11G02320.1-protein|Name=NO11G02320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MKLRNLTLLHLLVIFVGFACLFSSTTVADSAPAAPSTPTDSAASATGTGQ
NKLGEDFTDFAVPERAAATVGESLGFAALVLGVLAVAGVNTYYKIKSSPG
GLPGYSQAIYMREQQ*
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Synonyms
Publications