NO11G02320.1, NO11G02320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02320.1
Unique NameNO11G02320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length348
Alignment locationchr11:745139..745486 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:745139..745486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G02320.1 vs.
Match: EWM24987.1 (hypothetical protein Naga_100122g4 [Nannochloropsis gaditana])

HSP 1 Score: 95.9 bits (237), Expect = 8.800e-17
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 0
Query:   43 ASATGTGQNKLGEDFTDFAVPERAAATVGESLGFAALVLGVLAVAGVNTYYKIKSSPGGLPGYSQA 109
            A+  G G  KLGE FTDF VP R AATVGESLGF ALV+GVLA+AGV T++K+KSSP GLPGYSQA
Sbjct:   26 ANDAGGGHKKLGEGFTDFTVPRRPAATVGESLGFVALVVGVLALAGVTTHFKLKSSPNGLPGYSQA 91          
The following BLAST results are available for this feature:
BLAST of NO11G02320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24987.18.800e-1772.73hypothetical protein Naga_100122g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02320NO11G02320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02320.1NO11G02320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02320.1.cds1NO11G02320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02320.1 ID=NO11G02320.1|Name=NO11G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=348bp
ATGAAGCTCCGCAACCTGACCCTCTTACACCTCCTGGTTATCTTCGTGGG
ATTTGCCTGCCTCTTTTCCAGCACCACAGTCGCAGACTCAGCCCCCGCTG
CTCCCAGTACCCCCACTGATTCCGCTGCCTCTGCTACTGGGACTGGGCAA
AATAAGCTGGGGGAGGATTTTACCGACTTTGCCGTGCCCGAGCGAGCAGC
AGCTACCGTGGGCGAGAGCTTGGGCTTTGCGGCCTTGGTTCTGGGGGTGT
TGGCGGTAGCGGGTGTGAACACGTATTACAAGATCAAGAGCAGCCCGGGT
GGTTTGCCGGGGTATAGTCAGGCGATTTATATGCGGGAACAACAATAA
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protein sequence of NO11G02320.1

>NO11G02320.1-protein ID=NO11G02320.1-protein|Name=NO11G02320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MKLRNLTLLHLLVIFVGFACLFSSTTVADSAPAAPSTPTDSAASATGTGQ
NKLGEDFTDFAVPERAAATVGESLGFAALVLGVLAVAGVNTYYKIKSSPG
GLPGYSQAIYMREQQ*
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mRNA from alignment at chr11:745139..745486+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02320.1 ID=NO11G02320.1|Name=NO11G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=348bp|location=Sequence derived from alignment at chr11:745139..745486+ (Nannochloropsis oceanica)
ATGAAGCTCCGCAACCTGACCCTCTTACACCTCCTGGTTATCTTCGTGGG ATTTGCCTGCCTCTTTTCCAGCACCACAGTCGCAGACTCAGCCCCCGCTG CTCCCAGTACCCCCACTGATTCCGCTGCCTCTGCTACTGGGACTGGGCAA AATAAGCTGGGGGAGGATTTTACCGACTTTGCCGTGCCCGAGCGAGCAGC AGCTACCGTGGGCGAGAGCTTGGGCTTTGCGGCCTTGGTTCTGGGGGTGT TGGCGGTAGCGGGTGTGAACACGTATTACAAGATCAAGAGCAGCCCGGGT GGTTTGCCGGGGTATAGTCAGGCGATTTATATGCGGGAACAACAATAA
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Coding sequence (CDS) from alignment at chr11:745139..745486+

>NO11G02320.1 ID=NO11G02320.1|Name=NO11G02320.1|organism=Nannochloropsis oceanica|type=CDS|length=348bp|location=Sequence derived from alignment at chr11:745139..745486+ (Nannochloropsis oceanica)
ATGAAGCTCCGCAACCTGACCCTCTTACACCTCCTGGTTATCTTCGTGGG
ATTTGCCTGCCTCTTTTCCAGCACCACAGTCGCAGACTCAGCCCCCGCTG
CTCCCAGTACCCCCACTGATTCCGCTGCCTCTGCTACTGGGACTGGGCAA
AATAAGCTGGGGGAGGATTTTACCGACTTTGCCGTGCCCGAGCGAGCAGC
AGCTACCGTGGGCGAGAGCTTGGGCTTTGCGGCCTTGGTTCTGGGGGTGT
TGGCGGTAGCGGGTGTGAACACGTATTACAAGATCAAGAGCAGCCCGGGT
GGTTTGCCGGGGTATAGTCAGGCGATTTATATGCGGGAACAACAATAA
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Synonyms
Publications