NO11G02190, NO11G02190 (gene) Nannochloropsis oceanica

Overview
NameNO11G02190
Unique NameNO11G02190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2433
Alignment locationchr11:704882..707314 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:704882..707314 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO11G02190 vs. NCBI_GenBank
Match: EWM24985.1 (hypothetical protein Naga_100122g18 [Nannochloropsis gaditana])

HSP 1 Score: 445.3 bits (1144), Expect = 3.500e-121
Identity = 220/358 (61.45%), Postives = 267/358 (74.58%), Query Frame = 0
Query:  340 EVMVPQMLYCLPGGGFNDIVVQLWRCVKYAVKTDRVLILGWENYLPVLPPYEQYFDLKNIPGLKLMSQWEAASIIRAAQARGQEVTHPSKQRLSLTALLGTGEEREDGPPFFIDVASLPNYVFHPKKQYTYHVLLYHKKGNQGTPEATLKHLIFSREIKQTFLSRWSQLPKPYIGMHVRGTDRKCGNKMTLKVFEKTQTLREHLKGAPVYLATDNPEAAVEQIQELKEKQGREITSFTYFPAKKEEENRGGKKER--------------------EANV-MPLHLNKVLSDEEKHQTNIDGFVDLLLLAFSEKFIMSCGGYSRLAGLLHWDKSIALSTLGLELEEGGDDDVNAVLSEA 677
            E  VP MLYCLPGGGFNDI VQLWRCV+YA+KT+RV+ILG+ENY+PVLPPYEQYF LK IPGL LMSQWEAA  IR A+ARGQ VT    +RL ++ LLG GEE EDGPPFFI  AS+PN  F+P+K Y+ H+L+YHKKGN+GTPE+T++H++FS E+K+TFL RW Q+ KPY+GMHVRGTDRKCG K   +V  K + LR  L GAP+YLATDNPEA +E   E ++ QGR+I SFTYFP+ ++      K  R                    E +V +PLHLN+ L  EEKHQTN+DGFVDLLLLAFS++FI SCGGYS+LA LLH DKS+AL+TLGL L     DDV++VL EA
Sbjct:  321 EERVPNMLYCLPGGGFNDIAVQLWRCVEYAIKTERVMILGYENYIPVLPPYEQYFRLKTIPGLSLMSQWEAADRIRHAEARGQRVTKAHGKRLPISMLLGNGEETEDGPPFFIATASVPNVAFNPEKNYSQHILVYHKKGNRGTPESTIRHVLFSEEVKRTFLLRWGQISKPYVGMHVRGTDRKCGRKKAPQVMRKVKFLRRRLIGAPIYLATDNPEATIEYRDEFEDNQGRKIFSFTYFPSHQKGVEEPVKDRRMFLHDTGTGQTDTNEQGLAGETDVHIPLHLNQALKAEEKHQTNVDGFVDLLLLAFSKRFIKSCGGYSQLAKLLHQDKSLALATLGLSLPH-DTDDVDSVLQEA 677          
BLAST of NO11G02190 vs. NCBI_GenBank
Match: EWM24604.1 (hypothetical protein Naga_100171g10 [Nannochloropsis gaditana])

HSP 1 Score: 240.7 bits (613), Expect = 1.300e-59
Identity = 136/350 (38.86%), Postives = 202/350 (57.71%), Query Frame = 0
Query:  348 YCLPGGGFNDIVVQLWRCVKYAVKTDRVLILGWENYLPVLPPYEQYFDLKNIPGLKLMSQWEAASIIRAAQARGQEVT-HPSKQRLSLTALLGTGEEREDGP-------PFFIDVASLPNYVFHPKKQYTYHVLLYHKKGNQGTPEATLKHLIFSREIKQTFLSRWSQLPKPYIGMHVRGTDRKCGN---KMTLKVFEKTQTLREHLKGAPVYLATDNPEAAVEQIQELKEKQGREITSFTYFPAKKEEEN----------RGGKKEREANVMPLHLNKVLSDEEKHQTNIDGFVDLLLLAFSEKFIMSCGGYSRLAGLLHWDKSIALSTLGLELEEGGDDDVNAVLSEA 677
            +CL  GG NDI V++W+C+++A  T RVL+L  ENY PV  P+  YF L+ IPGL+ M+ ++AA+   A   RG+ V+  PS+ +  L  LLG    + D P       PF      L +  F  +  Y   V+++H++GN G+    L+H+ F+  I+ TFL RWS+L KPY+ +H+R TD+ C +   +  L+V  +  T  +     P+Y+A+D+PE   +  +EL+E+Q R++ SFTY P   E+ N              +     +  LHL+  LS +EKHQTNID FVDLLLLA SE+ + SCGGYS LA  LH ++ +  S LGL    G +DD++ +L  A
Sbjct:  445 FCLLNGGLNDITVEMWKCIEFARTTQRVLVLAHENYNPVAAPWTPYFTLETIPGLRTMTPYQAAT---AINHRGRAVSVFPSRLQHHLDPLLGPKPAQGDSPEGLDPRQPFPFKFEKLKHLKFRFENTYHQDVVVFHRQGNVGSGVVALRHIKFAESIRSTFLERWSKLEKPYVALHLRRTDKSCSDEKMERLLQVLHRMGT-SDFWPEGPIYVASDHPELPEDFREELEERQKRQVVSFTYHPPVHEQRNALHEDPDEQKMKEMRRHSLGIEGLHLHDDLSPKEKHQTNIDAFVDLLLLAMSEELLTSCGGYSHLARELHQNQDVVFSVLGLP-APGPNDDLDMLLEAA 789          
BLAST of NO11G02190 vs. NCBI_GenBank
Match: OUX93666.1 (hypothetical protein CBB77_08310 [Hyphomonas sp. TMED17])

HSP 1 Score: 71.2 bits (173), Expect = 1.400e-8
Identity = 81/333 (24.32%), Postives = 133/333 (39.94%), Query Frame = 0
Query:  347 LYCLPGGGFNDIVVQLWRCVKYAVKTDRVLIL--GWENYLPVLPPYEQYFDLKNIPGLKLMSQWEAASIIRAAQARGQEVTHPSKQRLSLTALLGTGEE----------REDGPPFFIDVASLPNYVFHPKKQYTYHVLLYHKKGNQGTPEATLKHLIFSREIKQTFLSRWSQLPKPYIGMHVRGTDRKCGNKMTLKVFEKTQTLREHLKGAPVYLATDNPEAAVEQIQELKEKQGREITSFTYFPAKKEEENRGGKKEREANVMPLHLNKVLSDEEKHQTNIDGFVDLLLLAFSEKFIM----------SCGGYSRLAGLLHWDKSIALSTL 658
            + C P GG NDI+ Q+ +C +Y  + +R +I+    EN       + +YF  K+              +I +A+A         K +L+L  +  TG +          + D     ++V S     F   K Y+  VLL+H  G        L  +     I +    R  ++ + Y  +HVR TD K   K  L  +  +          P++LATDN        Q L E +   + SF+  P K+               + LH  K  SD+   + N D  +DLL+L+ + +  +          +  G+S+LA L  W+  I + TL
Sbjct:    5 ILCRPEGGLNDILCQIEKCCRYGERYNRTVIVDTNHENARNFHDDFSRYFFPKH------------KRLILSAKA--------IKPKLALMNVFPTGVQGKLNNYQTKWQGDWRGKLLEVESNQLLTFDFDKHYSQQVLLHHSTGGGTDSVFALLRIGVRPHIIKKLSERLQKIGRVYDAVHVRHTDYKTDYKSFLDNYSASSQ-------RPLFLATDNKSVVTHFKQALGENR---VFSFSALPEKQ---------------IALHSAK-FSDDATFRRNTDAILDLLMLSLAVRLQIFQINQNPIGATVSGFSQLA-LNLWESKILIKTL 290          
BLAST of NO11G02190 vs. NCBI_GenBank
Match: OUV83351.1 (hypothetical protein CBC91_00675 [Rickettsiales bacterium TMED131])

HSP 1 Score: 70.1 bits (170), Expect = 3.100e-8
Identity = 72/296 (24.32%), Postives = 132/296 (44.59%), Query Frame = 0
Query:  347 LYCLPGGGFNDIVVQLWRCVKYAVKTDRVLILGWENYLPVLPPYEQYFDLKNIPGLKLMSQWEAASIIRAAQARGQEVTHPSKQRLSLTALLGTGEER--EDGPPFFIDVASLPNYVFHPKKQYTYHVLLYHKKGNQGTPEATLKHLIFSREIKQTFLSRWSQLPKPYIGMHVRGTDRKCGNKMTLKVFEKTQTLREHLKGAPVYLATDNPEAAVEQIQELKEKQGREITSFTYFPAKK--------EEENRGGKKEREANV-MPLHLNKVLSDEEKHQTNIDGFVDLLLLAFSEK 632
            LY +P GG ND+ VQ+ R +KY  +  R+L+L  +N +  +  +  +FD++ I    + +    ++IIR          +P+        LL   ++   ++G   F        ++  P+K+    +++Y   G  G     LK LIF  +IK+  + +     +PY+ +HVR TDRKC  K           +RE      +Y+ TD+     + +    + +G  +  +T FP+ K        E  NR    +   ++ M  + +K+LS+ +       GF++LL    S +
Sbjct:    9 LYFIPKGGINDMFVQIERVIKYCTRYKRILLLDTKNSIYKI-NFSDFFDIEYIYCNIIYN----SNIIREILKNKSLSIYPAILTTDSIDLLNIDKKLTWKEGNTCF---CYKDTFLKLPEKEVKEDIIVYAACGG-GNGFIFLKKLIFKDKIKEICIRKLRGFKRPYLCIHVRNTDRKCNYKEMY-----MDNMREIHSYNLIYICTDD-----KNVITFFKSKGLNVVCYTSFPSGKYRSLHKTTEIPNRKKMYDIFVDIYMATNCSKILSNSQ------GGFINLLRQCHSNR 279          
The following BLAST results are available for this feature:
BLAST of NO11G02190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM24985.13.500e-12161.45hypothetical protein Naga_100122g18 [Nannochlorops... [more]
EWM24604.11.300e-5938.86hypothetical protein Naga_100171g10 [Nannochlorops... [more]
OUX93666.11.400e-824.32hypothetical protein CBB77_08310 [Hyphomonas sp. T... [more]
OUV83351.13.100e-824.32hypothetical protein CBC91_00675 [Rickettsiales ba... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002038NSK002038Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G02190.1NO11G02190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591418gene_5111Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100122g18gene5503Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G02190.1NO11G02190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G02190 ID=NO11G02190|Name=NO11G02190|organism=Nannochloropsis oceanica|type=gene|length=2433bp
ACATCAGGCAATTGACACTGGTCGTAACGCTCTTTTGCCCAGCCGTTGCC
GCGTTTGTTCTTTGTTCTTTCCTCGGCAGCTTGGGCCTCGGCATCAACAA
GAAGAGAAAAGTACTCCAGTAAACCAAGCCTACTCATGCGGCGCGCTATC
GTTCGGGCCTCCTTCGGCGGGCTTGGGGGGCTGCAGACAGATGATGGGAC
GACACTGTCTGCGCCTACACCCTGGTCGTCGTCAGTTCGGCGGCTGACCA
AACGCCGTTATCAGTGGGTCATAGGGGTGATGGTGGGCAGCTTCATCTTC
GCCGCCTCCCTGCTGACCTATACGTACACGACGCGCACGGGCTTCGCCAA
CATCGAGGATACCTCCGACATCCACGTTGTTTCCTTGGTGGCGCAAGCCG
AGCCGGCTGCATCGTCATTGACGCCGTTGTTGGAGCCCGCCGCTCCCGCA
TCGCCTGTTGAAGAGGATGGGCGGCAACACAGAGAACAGCCACCAAAAAC
ATTGCATGTTGTATTACAGCCGAAACAAGAGCCTTTGCTGGATAAATCAG
TGCTGGCTGCGCAGGAAGAGAAGGCGGTTGGGGAAGGGAATGAATTAGAG
GTCAAAAGTGTAGAAATGGGGAAGAAGGATAAGATGAAAGCGTCTGAGAA
CAGCACAACTGGAGCTTTGGAGCGGGAGGCAGAAACTACAGTCTTAAAAA
AAAAAAAAAAAGAGGAGAGTAGCGATATGGATGCTGAAAGTTCACATCAC
GACATCGCTGTTGATGCGTTGAATGACATCTCTACGGATTGGAGAGAGGA
GAAGGAGGAGGAGAAGGAGGAAGAGAAGGAGGAAAAAATTGAAGAGCAAC
AGGAGGAGATGGAGAATATGGAGAAGGTGGTGGAGGAAGAAGAAGAAGAC
GGAAACATAGATGAAGTGGATGAGCAGCCTCAGCGTAAGGAGCAGCAGCA
GCAGCATGTCGAAGAGCCGCAGGAGGCTGGTTTAGATCTCGCTGCTGTCC
CAGTCGATAAGCCCCATGCTGACACGGATTTGGCCCGTGGCACCCAGAAC
AAAAAGCAAGAAGCCCCTTACCAGCAGCAGCAGCAGCATGTGGAGCAGAA
GCAGAAGCAGAAGCATGTGGAGAGCGGAGATGCCAAGGAAGAGACCAAAA
ACGAGGTGATGGTACCTCAAATGTTGTATTGCTTGCCGGGAGGTGGCTTC
AATGATATTGTCGTCCAACTGTGGCGGTGCGTGAAATATGCCGTCAAGAC
CGATCGAGTGCTGATCCTCGGGTGGGAGAATTACTTGCCTGTACTACCCC
CTTATGAGCAGTACTTTGATCTGAAAAACATCCCGGGCCTTAAGCTCATG
TCACAATGGGAGGCGGCGTCTATCATTCGCGCTGCACAGGCACGTGGACA
GGAAGTGACGCATCCATCGAAGCAAAGGTTGAGCTTGACGGCCTTGCTGG
GTACGGGGGAAGAAAGGGAGGATGGCCCCCCGTTCTTCATTGATGTTGCC
AGTCTACCGAATTATGTATTTCATCCCAAAAAACAGTATACGTACCATGT
CCTACTGTATCACAAAAAGGGAAACCAAGGCACGCCTGAGGCTACCTTAA
AACACCTCATCTTCTCCCGAGAAATCAAACAAACCTTCCTCTCCCGTTGG
AGCCAGCTCCCAAAACCCTACATAGGCATGCATGTCCGAGGAACGGACCG
AAAATGCGGTAATAAGATGACACTCAAAGTATTTGAAAAGACTCAAACGT
TACGTGAACATTTAAAAGGAGCGCCTGTCTACCTCGCGACAGACAACCCC
GAAGCAGCTGTTGAGCAGATACAGGAGTTGAAAGAGAAGCAGGGAAGGGA
GATTACGTCATTCACATATTTTCCGGCCAAGAAGGAGGAGGAGAATAGGG
GAGGGAAGAAGGAAAGGGAGGCAAATGTAATGCCGCTTCATTTAAACAAG
GTACTGAGCGACGAGGAGAAGCACCAGACAAACATTGACGGGTTTGTGGA
TTTGCTGTTGTTGGCTTTCAGTGAGAAGTTCATCATGTCTTGTGGCGGGT
ACTCGCGTTTGGCCGGGCTGTTGCATTGGGATAAGAGTATTGCGCTCAGT
ACGTTGGGCTTGGAGCTGGAGGAGGGTGGTGACGACGATGTGAATGCAGT
CTTGTCGGAGGCGTGGAGGGAGCAACAGAAAGCAAATACGAAAGGACAAG
GAACAGTCGCATGAGGGTAAAAAGCTTGCGGTTGCCATGGTGGAACTATG
TGCCGCCGATGTAGAAAGAAGCATCGATCGCAGTTGTTGCATGCCGAGGC
CAGCAGCAGCAGCAACGAGAAGCACTTGAAGAAGATAGAGATTGATTAAA
TGATAGAAATAGAGAGCAGGACAGCAATAGGGGACGCCGGAAATATGAGA
AACAACAAAATGAAATCGACCAAAATTTAAACG
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protein sequence of NO11G02190.1

>NO11G02190.1-protein ID=NO11G02190.1-protein|Name=NO11G02190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=693bp
MRRAIVRASFGGLGGLQTDDGTTLSAPTPWSSSVRRLTKRRYQWVIGVMV
GSFIFAASLLTYTYTTRTGFANIEDTSDIHVVSLVAQAEPAASSLTPLLE
PAAPASPVEEDGRQHREQPPKTLHVVLQPKQEPLLDKSVLAAQEEKAVGE
GNELEVKSVEMGKKDKMKASENSTTGALEREAETTVLKKKKKEESSDMDA
ESSHHDIAVDALNDISTDWREEKEEEKEEEKEEKIEEQQEEMENMEKVVE
EEEEDGNIDEVDEQPQRKEQQQQHVEEPQEAGLDLAAVPVDKPHADTDLA
RGTQNKKQEAPYQQQQQHVEQKQKQKHVESGDAKEETKNEVMVPQMLYCL
PGGGFNDIVVQLWRCVKYAVKTDRVLILGWENYLPVLPPYEQYFDLKNIP
GLKLMSQWEAASIIRAAQARGQEVTHPSKQRLSLTALLGTGEEREDGPPF
FIDVASLPNYVFHPKKQYTYHVLLYHKKGNQGTPEATLKHLIFSREIKQT
FLSRWSQLPKPYIGMHVRGTDRKCGNKMTLKVFEKTQTLREHLKGAPVYL
ATDNPEAAVEQIQELKEKQGREITSFTYFPAKKEEENRGGKKEREANVMP
LHLNKVLSDEEKHQTNIDGFVDLLLLAFSEKFIMSCGGYSRLAGLLHWDK
SIALSTLGLELEEGGDDDVNAVLSEAWREQQKANTKGQGTVA*
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Synonyms
Publications