NO11G02190.1, NO11G02190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02190.1
Unique NameNO11G02190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2433
Alignment locationchr11:704882..707314 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:704882..707314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G02190.1 vs.
Match: EWM24985.1 (hypothetical protein Naga_100122g18 [Nannochloropsis gaditana])

HSP 1 Score: 445.7 bits (1145), Expect = 2.700e-121
Identity = 222/369 (60.16%), Postives = 270/369 (73.17%), Query Frame = 0
Query:  329 ESGDAKEETKNEVMVPQMLYCLPGGGFNDIVVQLWRCVKYAVKTDRVLILGWENYLPVLPPYEQYFDLKNIPGLKLMSQWEAASIIRAAQARGQEVTHPSKQRLSLTALLGTGEEREDGPPFFIDVASLPNYVFHPKKQYTYHVLLYHKKGNQGTPEATLKHLIFSREIKQTFLSRWSQLPKPYIGMHVRGTDRKCGNKMTLKVFEKTQTLREHLKGAPVYLATDNPEAAVEQIQELKEKQGREITSFTYFPAKKEEENRGGKKER--------------------EANV-MPLHLNKVLSDEEKHQTNIDGFVDLLLLAFSEKFIMSCGGYSRLAGLLHWDKSIALSTLGLELEEGGDDDVNAVLSEA 677
            +SG        E  VP MLYCLPGGGFNDI VQLWRCV+YA+KT+RV+ILG+ENY+PVLPPYEQYF LK IPGL LMSQWEAA  IR A+ARGQ VT    +RL ++ LLG GEE EDGPPFFI  AS+PN  F+P+K Y+ H+L+YHKKGN+GTPE+T++H++FS E+K+TFL RW Q+ KPY+GMHVRGTDRKCG K   +V  K + LR  L GAP+YLATDNPEA +E   E ++ QGR+I SFTYFP+ ++      K  R                    E +V +PLHLN+ L  EEKHQTN+DGFVDLLLLAFS++FI SCGGYS+LA LLH DKS+AL+TLGL L     DDV++VL EA
Sbjct:  310 DSGAISAGNLPEERVPNMLYCLPGGGFNDIAVQLWRCVEYAIKTERVMILGYENYIPVLPPYEQYFRLKTIPGLSLMSQWEAADRIRHAEARGQRVTKAHGKRLPISMLLGNGEETEDGPPFFIATASVPNVAFNPEKNYSQHILVYHKKGNRGTPESTIRHVLFSEEVKRTFLLRWGQISKPYVGMHVRGTDRKCGRKKAPQVMRKVKFLRRRLIGAPIYLATDNPEATIEYRDEFEDNQGRKIFSFTYFPSHQKGVEEPVKDRRMFLHDTGTGQTDTNEQGLAGETDVHIPLHLNQALKAEEKHQTNVDGFVDLLLLAFSKRFIKSCGGYSQLAKLLHQDKSLALATLGLSLPH-DTDDVDSVLQEA 677          
The following BLAST results are available for this feature:
BLAST of NO11G02190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24985.12.700e-12160.16hypothetical protein Naga_100122g18 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02190NO11G02190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02190.1NO11G02190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02190.1.cds1NO11G02190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02190.1 ID=NO11G02190.1|Name=NO11G02190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2433bp
ACATCAGGCAATTGACACTGGTCGTAACGCTCTTTTGCCCAGCCGTTGCC
GCGTTTGTTCTTTGTTCTTTCCTCGGCAGCTTGGGCCTCGGCATCAACAA
GAAGAGAAAAGTACTCCAGTAAACCAAGCCTACTCATGCGGCGCGCTATC
GTTCGGGCCTCCTTCGGCGGGCTTGGGGGGCTGCAGACAGATGATGGGAC
GACACTGTCTGCGCCTACACCCTGGTCGTCGTCAGTTCGGCGGCTGACCA
AACGCCGTTATCAGTGGGTCATAGGGGTGATGGTGGGCAGCTTCATCTTC
GCCGCCTCCCTGCTGACCTATACGTACACGACGCGCACGGGCTTCGCCAA
CATCGAGGATACCTCCGACATCCACGTTGTTTCCTTGGTGGCGCAAGCCG
AGCCGGCTGCATCGTCATTGACGCCGTTGTTGGAGCCCGCCGCTCCCGCA
TCGCCTGTTGAAGAGGATGGGCGGCAACACAGAGAACAGCCACCAAAAAC
ATTGCATGTTGTATTACAGCCGAAACAAGAGCCTTTGCTGGATAAATCAG
TGCTGGCTGCGCAGGAAGAGAAGGCGGTTGGGGAAGGGAATGAATTAGAG
GTCAAAAGTGTAGAAATGGGGAAGAAGGATAAGATGAAAGCGTCTGAGAA
CAGCACAACTGGAGCTTTGGAGCGGGAGGCAGAAACTACAGTCTTAAAAA
AAAAAAAAAAAGAGGAGAGTAGCGATATGGATGCTGAAAGTTCACATCAC
GACATCGCTGTTGATGCGTTGAATGACATCTCTACGGATTGGAGAGAGGA
GAAGGAGGAGGAGAAGGAGGAAGAGAAGGAGGAAAAAATTGAAGAGCAAC
AGGAGGAGATGGAGAATATGGAGAAGGTGGTGGAGGAAGAAGAAGAAGAC
GGAAACATAGATGAAGTGGATGAGCAGCCTCAGCGTAAGGAGCAGCAGCA
GCAGCATGTCGAAGAGCCGCAGGAGGCTGGTTTAGATCTCGCTGCTGTCC
CAGTCGATAAGCCCCATGCTGACACGGATTTGGCCCGTGGCACCCAGAAC
AAAAAGCAAGAAGCCCCTTACCAGCAGCAGCAGCAGCATGTGGAGCAGAA
GCAGAAGCAGAAGCATGTGGAGAGCGGAGATGCCAAGGAAGAGACCAAAA
ACGAGGTGATGGTACCTCAAATGTTGTATTGCTTGCCGGGAGGTGGCTTC
AATGATATTGTCGTCCAACTGTGGCGGTGCGTGAAATATGCCGTCAAGAC
CGATCGAGTGCTGATCCTCGGGTGGGAGAATTACTTGCCTGTACTACCCC
CTTATGAGCAGTACTTTGATCTGAAAAACATCCCGGGCCTTAAGCTCATG
TCACAATGGGAGGCGGCGTCTATCATTCGCGCTGCACAGGCACGTGGACA
GGAAGTGACGCATCCATCGAAGCAAAGGTTGAGCTTGACGGCCTTGCTGG
GTACGGGGGAAGAAAGGGAGGATGGCCCCCCGTTCTTCATTGATGTTGCC
AGTCTACCGAATTATGTATTTCATCCCAAAAAACAGTATACGTACCATGT
CCTACTGTATCACAAAAAGGGAAACCAAGGCACGCCTGAGGCTACCTTAA
AACACCTCATCTTCTCCCGAGAAATCAAACAAACCTTCCTCTCCCGTTGG
AGCCAGCTCCCAAAACCCTACATAGGCATGCATGTCCGAGGAACGGACCG
AAAATGCGGTAATAAGATGACACTCAAAGTATTTGAAAAGACTCAAACGT
TACGTGAACATTTAAAAGGAGCGCCTGTCTACCTCGCGACAGACAACCCC
GAAGCAGCTGTTGAGCAGATACAGGAGTTGAAAGAGAAGCAGGGAAGGGA
GATTACGTCATTCACATATTTTCCGGCCAAGAAGGAGGAGGAGAATAGGG
GAGGGAAGAAGGAAAGGGAGGCAAATGTAATGCCGCTTCATTTAAACAAG
GTACTGAGCGACGAGGAGAAGCACCAGACAAACATTGACGGGTTTGTGGA
TTTGCTGTTGTTGGCTTTCAGTGAGAAGTTCATCATGTCTTGTGGCGGGT
ACTCGCGTTTGGCCGGGCTGTTGCATTGGGATAAGAGTATTGCGCTCAGT
ACGTTGGGCTTGGAGCTGGAGGAGGGTGGTGACGACGATGTGAATGCAGT
CTTGTCGGAGGCGTGGAGGGAGCAACAGAAAGCAAATACGAAAGGACAAG
GAACAGTCGCATGAGGGTAAAAAGCTTGCGGTTGCCATGGTGGAACTATG
TGCCGCCGATGTAGAAAGAAGCATCGATCGCAGTTGTTGCATGCCGAGGC
CAGCAGCAGCAGCAACGAGAAGCACTTGAAGAAGATAGAGATTGATTAAA
TGATAGAAATAGAGAGCAGGACAGCAATAGGGGACGCCGGAAATATGAGA
AACAACAAAATGAAATCGACCAAAATTTAAACG
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protein sequence of NO11G02190.1

>NO11G02190.1-protein ID=NO11G02190.1-protein|Name=NO11G02190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=693bp
MRRAIVRASFGGLGGLQTDDGTTLSAPTPWSSSVRRLTKRRYQWVIGVMV
GSFIFAASLLTYTYTTRTGFANIEDTSDIHVVSLVAQAEPAASSLTPLLE
PAAPASPVEEDGRQHREQPPKTLHVVLQPKQEPLLDKSVLAAQEEKAVGE
GNELEVKSVEMGKKDKMKASENSTTGALEREAETTVLKKKKKEESSDMDA
ESSHHDIAVDALNDISTDWREEKEEEKEEEKEEKIEEQQEEMENMEKVVE
EEEEDGNIDEVDEQPQRKEQQQQHVEEPQEAGLDLAAVPVDKPHADTDLA
RGTQNKKQEAPYQQQQQHVEQKQKQKHVESGDAKEETKNEVMVPQMLYCL
PGGGFNDIVVQLWRCVKYAVKTDRVLILGWENYLPVLPPYEQYFDLKNIP
GLKLMSQWEAASIIRAAQARGQEVTHPSKQRLSLTALLGTGEEREDGPPF
FIDVASLPNYVFHPKKQYTYHVLLYHKKGNQGTPEATLKHLIFSREIKQT
FLSRWSQLPKPYIGMHVRGTDRKCGNKMTLKVFEKTQTLREHLKGAPVYL
ATDNPEAAVEQIQELKEKQGREITSFTYFPAKKEEENRGGKKEREANVMP
LHLNKVLSDEEKHQTNIDGFVDLLLLAFSEKFIMSCGGYSRLAGLLHWDK
SIALSTLGLELEEGGDDDVNAVLSEAWREQQKANTKGQGTVA*
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mRNA from alignment at chr11:704882..707314-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02190.1 ID=NO11G02190.1|Name=NO11G02190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2433bp|location=Sequence derived from alignment at chr11:704882..707314- (Nannochloropsis oceanica)
ACATCAGGCAATTGACACTGGTCGTAACGCTCTTTTGCCCAGCCGTTGCC GCGTTTGTTCTTTGTTCTTTCCTCGGCAGCTTGGGCCTCGGCATCAACAA GAAGAGAAAAGTACTCCAGTAAACCAAGCCTACTCATGCGGCGCGCTATC GTTCGGGCCTCCTTCGGCGGGCTTGGGGGGCTGCAGACAGATGATGGGAC GACACTGTCTGCGCCTACACCCTGGTCGTCGTCAGTTCGGCGGCTGACCA AACGCCGTTATCAGTGGGTCATAGGGGTGATGGTGGGCAGCTTCATCTTC GCCGCCTCCCTGCTGACCTATACGTACACGACGCGCACGGGCTTCGCCAA CATCGAGGATACCTCCGACATCCACGTTGTTTCCTTGGTGGCGCAAGCCG AGCCGGCTGCATCGTCATTGACGCCGTTGTTGGAGCCCGCCGCTCCCGCA TCGCCTGTTGAAGAGGATGGGCGGCAACACAGAGAACAGCCACCAAAAAC ATTGCATGTTGTATTACAGCCGAAACAAGAGCCTTTGCTGGATAAATCAG TGCTGGCTGCGCAGGAAGAGAAGGCGGTTGGGGAAGGGAATGAATTAGAG GTCAAAAGTGTAGAAATGGGGAAGAAGGATAAGATGAAAGCGTCTGAGAA CAGCACAACTGGAGCTTTGGAGCGGGAGGCAGAAACTACAGTCTTAAAAA AAAAAAAAAAAGAGGAGAGTAGCGATATGGATGCTGAAAGTTCACATCAC GACATCGCTGTTGATGCGTTGAATGACATCTCTACGGATTGGAGAGAGGA GAAGGAGGAGGAGAAGGAGGAAGAGAAGGAGGAAAAAATTGAAGAGCAAC AGGAGGAGATGGAGAATATGGAGAAGGTGGTGGAGGAAGAAGAAGAAGAC GGAAACATAGATGAAGTGGATGAGCAGCCTCAGCGTAAGGAGCAGCAGCA GCAGCATGTCGAAGAGCCGCAGGAGGCTGGTTTAGATCTCGCTGCTGTCC CAGTCGATAAGCCCCATGCTGACACGGATTTGGCCCGTGGCACCCAGAAC AAAAAGCAAGAAGCCCCTTACCAGCAGCAGCAGCAGCATGTGGAGCAGAA GCAGAAGCAGAAGCATGTGGAGAGCGGAGATGCCAAGGAAGAGACCAAAA ACGAGGTGATGGTACCTCAAATGTTGTATTGCTTGCCGGGAGGTGGCTTC AATGATATTGTCGTCCAACTGTGGCGGTGCGTGAAATATGCCGTCAAGAC CGATCGAGTGCTGATCCTCGGGTGGGAGAATTACTTGCCTGTACTACCCC CTTATGAGCAGTACTTTGATCTGAAAAACATCCCGGGCCTTAAGCTCATG TCACAATGGGAGGCGGCGTCTATCATTCGCGCTGCACAGGCACGTGGACA GGAAGTGACGCATCCATCGAAGCAAAGGTTGAGCTTGACGGCCTTGCTGG GTACGGGGGAAGAAAGGGAGGATGGCCCCCCGTTCTTCATTGATGTTGCC AGTCTACCGAATTATGTATTTCATCCCAAAAAACAGTATACGTACCATGT CCTACTGTATCACAAAAAGGGAAACCAAGGCACGCCTGAGGCTACCTTAA AACACCTCATCTTCTCCCGAGAAATCAAACAAACCTTCCTCTCCCGTTGG AGCCAGCTCCCAAAACCCTACATAGGCATGCATGTCCGAGGAACGGACCG AAAATGCGGTAATAAGATGACACTCAAAGTATTTGAAAAGACTCAAACGT TACGTGAACATTTAAAAGGAGCGCCTGTCTACCTCGCGACAGACAACCCC GAAGCAGCTGTTGAGCAGATACAGGAGTTGAAAGAGAAGCAGGGAAGGGA GATTACGTCATTCACATATTTTCCGGCCAAGAAGGAGGAGGAGAATAGGG GAGGGAAGAAGGAAAGGGAGGCAAATGTAATGCCGCTTCATTTAAACAAG GTACTGAGCGACGAGGAGAAGCACCAGACAAACATTGACGGGTTTGTGGA TTTGCTGTTGTTGGCTTTCAGTGAGAAGTTCATCATGTCTTGTGGCGGGT ACTCGCGTTTGGCCGGGCTGTTGCATTGGGATAAGAGTATTGCGCTCAGT ACGTTGGGCTTGGAGCTGGAGGAGGGTGGTGACGACGATGTGAATGCAGT CTTGTCGGAGGCGTGGAGGGAGCAACAGAAAGCAAATACGAAAGGACAAG GAACAGTCGCATGAGGGTAAAAAGCTTGCGGTTGCCATGGTGGAACTATG TGCCGCCGATGTAGAAAGAAGCATCGATCGCAGTTGTTGCATGCCGAGGC CAGCAGCAGCAGCAACGAGAAGCACTTGAAGAAGATAGAGATTGATTAAA TGATAGAAATAGAGAGCAGGACAGCAATAGGGGACGCCGGAAATATGAGA AACAACAAAATGAAATCGACCAAAATTTAAACG
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Coding sequence (CDS) from alignment at chr11:704882..707314-

>NO11G02190.1 ID=NO11G02190.1|Name=NO11G02190.1|organism=Nannochloropsis oceanica|type=CDS|length=2079bp|location=Sequence derived from alignment at chr11:704882..707314- (Nannochloropsis oceanica)
ATGCGGCGCGCTATCGTTCGGGCCTCCTTCGGCGGGCTTGGGGGGCTGCA
GACAGATGATGGGACGACACTGTCTGCGCCTACACCCTGGTCGTCGTCAG
TTCGGCGGCTGACCAAACGCCGTTATCAGTGGGTCATAGGGGTGATGGTG
GGCAGCTTCATCTTCGCCGCCTCCCTGCTGACCTATACGTACACGACGCG
CACGGGCTTCGCCAACATCGAGGATACCTCCGACATCCACGTTGTTTCCT
TGGTGGCGCAAGCCGAGCCGGCTGCATCGTCATTGACGCCGTTGTTGGAG
CCCGCCGCTCCCGCATCGCCTGTTGAAGAGGATGGGCGGCAACACAGAGA
ACAGCCACCAAAAACATTGCATGTTGTATTACAGCCGAAACAAGAGCCTT
TGCTGGATAAATCAGTGCTGGCTGCGCAGGAAGAGAAGGCGGTTGGGGAA
GGGAATGAATTAGAGGTCAAAAGTGTAGAAATGGGGAAGAAGGATAAGAT
GAAAGCGTCTGAGAACAGCACAACTGGAGCTTTGGAGCGGGAGGCAGAAA
CTACAGTCTTAAAAAAAAAAAAAAAAGAGGAGAGTAGCGATATGGATGCT
GAAAGTTCACATCACGACATCGCTGTTGATGCGTTGAATGACATCTCTAC
GGATTGGAGAGAGGAGAAGGAGGAGGAGAAGGAGGAAGAGAAGGAGGAAA
AAATTGAAGAGCAACAGGAGGAGATGGAGAATATGGAGAAGGTGGTGGAG
GAAGAAGAAGAAGACGGAAACATAGATGAAGTGGATGAGCAGCCTCAGCG
TAAGGAGCAGCAGCAGCAGCATGTCGAAGAGCCGCAGGAGGCTGGTTTAG
ATCTCGCTGCTGTCCCAGTCGATAAGCCCCATGCTGACACGGATTTGGCC
CGTGGCACCCAGAACAAAAAGCAAGAAGCCCCTTACCAGCAGCAGCAGCA
GCATGTGGAGCAGAAGCAGAAGCAGAAGCATGTGGAGAGCGGAGATGCCA
AGGAAGAGACCAAAAACGAGGTGATGGTACCTCAAATGTTGTATTGCTTG
CCGGGAGGTGGCTTCAATGATATTGTCGTCCAACTGTGGCGGTGCGTGAA
ATATGCCGTCAAGACCGATCGAGTGCTGATCCTCGGGTGGGAGAATTACT
TGCCTGTACTACCCCCTTATGAGCAGTACTTTGATCTGAAAAACATCCCG
GGCCTTAAGCTCATGTCACAATGGGAGGCGGCGTCTATCATTCGCGCTGC
ACAGGCACGTGGACAGGAAGTGACGCATCCATCGAAGCAAAGGTTGAGCT
TGACGGCCTTGCTGGGTACGGGGGAAGAAAGGGAGGATGGCCCCCCGTTC
TTCATTGATGTTGCCAGTCTACCGAATTATGTATTTCATCCCAAAAAACA
GTATACGTACCATGTCCTACTGTATCACAAAAAGGGAAACCAAGGCACGC
CTGAGGCTACCTTAAAACACCTCATCTTCTCCCGAGAAATCAAACAAACC
TTCCTCTCCCGTTGGAGCCAGCTCCCAAAACCCTACATAGGCATGCATGT
CCGAGGAACGGACCGAAAATGCGGTAATAAGATGACACTCAAAGTATTTG
AAAAGACTCAAACGTTACGTGAACATTTAAAAGGAGCGCCTGTCTACCTC
GCGACAGACAACCCCGAAGCAGCTGTTGAGCAGATACAGGAGTTGAAAGA
GAAGCAGGGAAGGGAGATTACGTCATTCACATATTTTCCGGCCAAGAAGG
AGGAGGAGAATAGGGGAGGGAAGAAGGAAAGGGAGGCAAATGTAATGCCG
CTTCATTTAAACAAGGTACTGAGCGACGAGGAGAAGCACCAGACAAACAT
TGACGGGTTTGTGGATTTGCTGTTGTTGGCTTTCAGTGAGAAGTTCATCA
TGTCTTGTGGCGGGTACTCGCGTTTGGCCGGGCTGTTGCATTGGGATAAG
AGTATTGCGCTCAGTACGTTGGGCTTGGAGCTGGAGGAGGGTGGTGACGA
CGATGTGAATGCAGTCTTGTCGGAGGCGTGGAGGGAGCAACAGAAAGCAA
ATACGAAAGGACAAGGAACAGTCGCATGA
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Synonyms
Publications