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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:704882..707314 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G02190.1 vs.
Match: EWM24985.1 (hypothetical protein Naga_100122g18 [Nannochloropsis gaditana]) HSP 1 Score: 445.7 bits (1145), Expect = 2.700e-121 Identity = 222/369 (60.16%), Postives = 270/369 (73.17%), Query Frame = 0
Query: 329 ESGDAKEETKNEVMVPQMLYCLPGGGFNDIVVQLWRCVKYAVKTDRVLILGWENYLPVLPPYEQYFDLKNIPGLKLMSQWEAASIIRAAQARGQEVTHPSKQRLSLTALLGTGEEREDGPPFFIDVASLPNYVFHPKKQYTYHVLLYHKKGNQGTPEATLKHLIFSREIKQTFLSRWSQLPKPYIGMHVRGTDRKCGNKMTLKVFEKTQTLREHLKGAPVYLATDNPEAAVEQIQELKEKQGREITSFTYFPAKKEEENRGGKKER--------------------EANV-MPLHLNKVLSDEEKHQTNIDGFVDLLLLAFSEKFIMSCGGYSRLAGLLHWDKSIALSTLGLELEEGGDDDVNAVLSEA 677
+SG E VP MLYCLPGGGFNDI VQLWRCV+YA+KT+RV+ILG+ENY+PVLPPYEQYF LK IPGL LMSQWEAA IR A+ARGQ VT +RL ++ LLG GEE EDGPPFFI AS+PN F+P+K Y+ H+L+YHKKGN+GTPE+T++H++FS E+K+TFL RW Q+ KPY+GMHVRGTDRKCG K +V K + LR L GAP+YLATDNPEA +E E ++ QGR+I SFTYFP+ ++ K R E +V +PLHLN+ L EEKHQTN+DGFVDLLLLAFS++FI SCGGYS+LA LLH DKS+AL+TLGL L DDV++VL EA
Sbjct: 310 DSGAISAGNLPEERVPNMLYCLPGGGFNDIAVQLWRCVEYAIKTERVMILGYENYIPVLPPYEQYFRLKTIPGLSLMSQWEAADRIRHAEARGQRVTKAHGKRLPISMLLGNGEETEDGPPFFIATASVPNVAFNPEKNYSQHILVYHKKGNRGTPESTIRHVLFSEEVKRTFLLRWGQISKPYVGMHVRGTDRKCGRKKAPQVMRKVKFLRRRLIGAPIYLATDNPEATIEYRDEFEDNQGRKIFSFTYFPSHQKGVEEPVKDRRMFLHDTGTGQTDTNEQGLAGETDVHIPLHLNQALKAEEKHQTNVDGFVDLLLLAFSKRFIKSCGGYSQLAKLLHQDKSLALATLGLSLPH-DTDDVDSVLQEA 677
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G02190.1 ID=NO11G02190.1|Name=NO11G02190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2433bp ACATCAGGCAATTGACACTGGTCGTAACGCTCTTTTGCCCAGCCGTTGCC GCGTTTGTTCTTTGTTCTTTCCTCGGCAGCTTGGGCCTCGGCATCAACAA GAAGAGAAAAGTACTCCAGTAAACCAAGCCTACTCATGCGGCGCGCTATC GTTCGGGCCTCCTTCGGCGGGCTTGGGGGGCTGCAGACAGATGATGGGAC GACACTGTCTGCGCCTACACCCTGGTCGTCGTCAGTTCGGCGGCTGACCA AACGCCGTTATCAGTGGGTCATAGGGGTGATGGTGGGCAGCTTCATCTTC GCCGCCTCCCTGCTGACCTATACGTACACGACGCGCACGGGCTTCGCCAA CATCGAGGATACCTCCGACATCCACGTTGTTTCCTTGGTGGCGCAAGCCG AGCCGGCTGCATCGTCATTGACGCCGTTGTTGGAGCCCGCCGCTCCCGCA TCGCCTGTTGAAGAGGATGGGCGGCAACACAGAGAACAGCCACCAAAAAC ATTGCATGTTGTATTACAGCCGAAACAAGAGCCTTTGCTGGATAAATCAG TGCTGGCTGCGCAGGAAGAGAAGGCGGTTGGGGAAGGGAATGAATTAGAG GTCAAAAGTGTAGAAATGGGGAAGAAGGATAAGATGAAAGCGTCTGAGAA CAGCACAACTGGAGCTTTGGAGCGGGAGGCAGAAACTACAGTCTTAAAAA AAAAAAAAAAAGAGGAGAGTAGCGATATGGATGCTGAAAGTTCACATCAC GACATCGCTGTTGATGCGTTGAATGACATCTCTACGGATTGGAGAGAGGA GAAGGAGGAGGAGAAGGAGGAAGAGAAGGAGGAAAAAATTGAAGAGCAAC AGGAGGAGATGGAGAATATGGAGAAGGTGGTGGAGGAAGAAGAAGAAGAC GGAAACATAGATGAAGTGGATGAGCAGCCTCAGCGTAAGGAGCAGCAGCA GCAGCATGTCGAAGAGCCGCAGGAGGCTGGTTTAGATCTCGCTGCTGTCC CAGTCGATAAGCCCCATGCTGACACGGATTTGGCCCGTGGCACCCAGAAC AAAAAGCAAGAAGCCCCTTACCAGCAGCAGCAGCAGCATGTGGAGCAGAA GCAGAAGCAGAAGCATGTGGAGAGCGGAGATGCCAAGGAAGAGACCAAAA ACGAGGTGATGGTACCTCAAATGTTGTATTGCTTGCCGGGAGGTGGCTTC AATGATATTGTCGTCCAACTGTGGCGGTGCGTGAAATATGCCGTCAAGAC CGATCGAGTGCTGATCCTCGGGTGGGAGAATTACTTGCCTGTACTACCCC CTTATGAGCAGTACTTTGATCTGAAAAACATCCCGGGCCTTAAGCTCATG TCACAATGGGAGGCGGCGTCTATCATTCGCGCTGCACAGGCACGTGGACA GGAAGTGACGCATCCATCGAAGCAAAGGTTGAGCTTGACGGCCTTGCTGG GTACGGGGGAAGAAAGGGAGGATGGCCCCCCGTTCTTCATTGATGTTGCC AGTCTACCGAATTATGTATTTCATCCCAAAAAACAGTATACGTACCATGT CCTACTGTATCACAAAAAGGGAAACCAAGGCACGCCTGAGGCTACCTTAA AACACCTCATCTTCTCCCGAGAAATCAAACAAACCTTCCTCTCCCGTTGG AGCCAGCTCCCAAAACCCTACATAGGCATGCATGTCCGAGGAACGGACCG AAAATGCGGTAATAAGATGACACTCAAAGTATTTGAAAAGACTCAAACGT TACGTGAACATTTAAAAGGAGCGCCTGTCTACCTCGCGACAGACAACCCC GAAGCAGCTGTTGAGCAGATACAGGAGTTGAAAGAGAAGCAGGGAAGGGA GATTACGTCATTCACATATTTTCCGGCCAAGAAGGAGGAGGAGAATAGGG GAGGGAAGAAGGAAAGGGAGGCAAATGTAATGCCGCTTCATTTAAACAAG GTACTGAGCGACGAGGAGAAGCACCAGACAAACATTGACGGGTTTGTGGA TTTGCTGTTGTTGGCTTTCAGTGAGAAGTTCATCATGTCTTGTGGCGGGT ACTCGCGTTTGGCCGGGCTGTTGCATTGGGATAAGAGTATTGCGCTCAGT ACGTTGGGCTTGGAGCTGGAGGAGGGTGGTGACGACGATGTGAATGCAGT CTTGTCGGAGGCGTGGAGGGAGCAACAGAAAGCAAATACGAAAGGACAAG GAACAGTCGCATGAGGGTAAAAAGCTTGCGGTTGCCATGGTGGAACTATG TGCCGCCGATGTAGAAAGAAGCATCGATCGCAGTTGTTGCATGCCGAGGC CAGCAGCAGCAGCAACGAGAAGCACTTGAAGAAGATAGAGATTGATTAAA TGATAGAAATAGAGAGCAGGACAGCAATAGGGGACGCCGGAAATATGAGA AACAACAAAATGAAATCGACCAAAATTTAAACG back to topprotein sequence of NO11G02190.1 >NO11G02190.1-protein ID=NO11G02190.1-protein|Name=NO11G02190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=693bp MRRAIVRASFGGLGGLQTDDGTTLSAPTPWSSSVRRLTKRRYQWVIGVMV GSFIFAASLLTYTYTTRTGFANIEDTSDIHVVSLVAQAEPAASSLTPLLE PAAPASPVEEDGRQHREQPPKTLHVVLQPKQEPLLDKSVLAAQEEKAVGE GNELEVKSVEMGKKDKMKASENSTTGALEREAETTVLKKKKKEESSDMDA ESSHHDIAVDALNDISTDWREEKEEEKEEEKEEKIEEQQEEMENMEKVVE EEEEDGNIDEVDEQPQRKEQQQQHVEEPQEAGLDLAAVPVDKPHADTDLA RGTQNKKQEAPYQQQQQHVEQKQKQKHVESGDAKEETKNEVMVPQMLYCL PGGGFNDIVVQLWRCVKYAVKTDRVLILGWENYLPVLPPYEQYFDLKNIP GLKLMSQWEAASIIRAAQARGQEVTHPSKQRLSLTALLGTGEEREDGPPF FIDVASLPNYVFHPKKQYTYHVLLYHKKGNQGTPEATLKHLIFSREIKQT FLSRWSQLPKPYIGMHVRGTDRKCGNKMTLKVFEKTQTLREHLKGAPVYL ATDNPEAAVEQIQELKEKQGREITSFTYFPAKKEEENRGGKKEREANVMP LHLNKVLSDEEKHQTNIDGFVDLLLLAFSEKFIMSCGGYSRLAGLLHWDK SIALSTLGLELEEGGDDDVNAVLSEAWREQQKANTKGQGTVA* back to topmRNA from alignment at chr11:704882..707314- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G02190.1 ID=NO11G02190.1|Name=NO11G02190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2433bp|location=Sequence derived from alignment at chr11:704882..707314- (Nannochloropsis oceanica) ACATCAGGCAATTGACACTGGTCGTAACGCTCTTTTGCCCAGCCGTTGCC
GCGTTTGTTCTTTGTTCTTTCCTCGGCAGCTTGGGCCTCGGCATCAACAA
GAAGAGAAAAGTACTCCAGTAAACCAAGCCTACTCATGCGGCGCGCTATC
GTTCGGGCCTCCTTCGGCGGGCTTGGGGGGCTGCAGACAGATGATGGGAC
GACACTGTCTGCGCCTACACCCTGGTCGTCGTCAGTTCGGCGGCTGACCA
AACGCCGTTATCAGTGGGTCATAGGGGTGATGGTGGGCAGCTTCATCTTC
GCCGCCTCCCTGCTGACCTATACGTACACGACGCGCACGGGCTTCGCCAA
CATCGAGGATACCTCCGACATCCACGTTGTTTCCTTGGTGGCGCAAGCCG
AGCCGGCTGCATCGTCATTGACGCCGTTGTTGGAGCCCGCCGCTCCCGCA
TCGCCTGTTGAAGAGGATGGGCGGCAACACAGAGAACAGCCACCAAAAAC
ATTGCATGTTGTATTACAGCCGAAACAAGAGCCTTTGCTGGATAAATCAG
TGCTGGCTGCGCAGGAAGAGAAGGCGGTTGGGGAAGGGAATGAATTAGAG
GTCAAAAGTGTAGAAATGGGGAAGAAGGATAAGATGAAAGCGTCTGAGAA
CAGCACAACTGGAGCTTTGGAGCGGGAGGCAGAAACTACAGTCTTAAAAA
AAAAAAAAAAAGAGGAGAGTAGCGATATGGATGCTGAAAGTTCACATCAC
GACATCGCTGTTGATGCGTTGAATGACATCTCTACGGATTGGAGAGAGGA
GAAGGAGGAGGAGAAGGAGGAAGAGAAGGAGGAAAAAATTGAAGAGCAAC
AGGAGGAGATGGAGAATATGGAGAAGGTGGTGGAGGAAGAAGAAGAAGAC
GGAAACATAGATGAAGTGGATGAGCAGCCTCAGCGTAAGGAGCAGCAGCA
GCAGCATGTCGAAGAGCCGCAGGAGGCTGGTTTAGATCTCGCTGCTGTCC
CAGTCGATAAGCCCCATGCTGACACGGATTTGGCCCGTGGCACCCAGAAC
AAAAAGCAAGAAGCCCCTTACCAGCAGCAGCAGCAGCATGTGGAGCAGAA
GCAGAAGCAGAAGCATGTGGAGAGCGGAGATGCCAAGGAAGAGACCAAAA
ACGAGGTGATGGTACCTCAAATGTTGTATTGCTTGCCGGGAGGTGGCTTC
AATGATATTGTCGTCCAACTGTGGCGGTGCGTGAAATATGCCGTCAAGAC
CGATCGAGTGCTGATCCTCGGGTGGGAGAATTACTTGCCTGTACTACCCC
CTTATGAGCAGTACTTTGATCTGAAAAACATCCCGGGCCTTAAGCTCATG
TCACAATGGGAGGCGGCGTCTATCATTCGCGCTGCACAGGCACGTGGACA
GGAAGTGACGCATCCATCGAAGCAAAGGTTGAGCTTGACGGCCTTGCTGG
GTACGGGGGAAGAAAGGGAGGATGGCCCCCCGTTCTTCATTGATGTTGCC
AGTCTACCGAATTATGTATTTCATCCCAAAAAACAGTATACGTACCATGT
CCTACTGTATCACAAAAAGGGAAACCAAGGCACGCCTGAGGCTACCTTAA
AACACCTCATCTTCTCCCGAGAAATCAAACAAACCTTCCTCTCCCGTTGG
AGCCAGCTCCCAAAACCCTACATAGGCATGCATGTCCGAGGAACGGACCG
AAAATGCGGTAATAAGATGACACTCAAAGTATTTGAAAAGACTCAAACGT
TACGTGAACATTTAAAAGGAGCGCCTGTCTACCTCGCGACAGACAACCCC
GAAGCAGCTGTTGAGCAGATACAGGAGTTGAAAGAGAAGCAGGGAAGGGA
GATTACGTCATTCACATATTTTCCGGCCAAGAAGGAGGAGGAGAATAGGG
GAGGGAAGAAGGAAAGGGAGGCAAATGTAATGCCGCTTCATTTAAACAAG
GTACTGAGCGACGAGGAGAAGCACCAGACAAACATTGACGGGTTTGTGGA
TTTGCTGTTGTTGGCTTTCAGTGAGAAGTTCATCATGTCTTGTGGCGGGT
ACTCGCGTTTGGCCGGGCTGTTGCATTGGGATAAGAGTATTGCGCTCAGT
ACGTTGGGCTTGGAGCTGGAGGAGGGTGGTGACGACGATGTGAATGCAGT
CTTGTCGGAGGCGTGGAGGGAGCAACAGAAAGCAAATACGAAAGGACAAG
GAACAGTCGCATGAGGGTAAAAAGCTTGCGGTTGCCATGGTGGAACTATG
TGCCGCCGATGTAGAAAGAAGCATCGATCGCAGTTGTTGCATGCCGAGGC
CAGCAGCAGCAGCAACGAGAAGCACTTGAAGAAGATAGAGATTGATTAAA
TGATAGAAATAGAGAGCAGGACAGCAATAGGGGACGCCGGAAATATGAGA
AACAACAAAATGAAATCGACCAAAATTTAAACG back to topCoding sequence (CDS) from alignment at chr11:704882..707314- >NO11G02190.1 ID=NO11G02190.1|Name=NO11G02190.1|organism=Nannochloropsis oceanica|type=CDS|length=2079bp|location=Sequence derived from alignment at chr11:704882..707314- (Nannochloropsis oceanica) ATGCGGCGCGCTATCGTTCGGGCCTCCTTCGGCGGGCTTGGGGGGCTGCA GACAGATGATGGGACGACACTGTCTGCGCCTACACCCTGGTCGTCGTCAG TTCGGCGGCTGACCAAACGCCGTTATCAGTGGGTCATAGGGGTGATGGTG GGCAGCTTCATCTTCGCCGCCTCCCTGCTGACCTATACGTACACGACGCG CACGGGCTTCGCCAACATCGAGGATACCTCCGACATCCACGTTGTTTCCT TGGTGGCGCAAGCCGAGCCGGCTGCATCGTCATTGACGCCGTTGTTGGAG CCCGCCGCTCCCGCATCGCCTGTTGAAGAGGATGGGCGGCAACACAGAGA ACAGCCACCAAAAACATTGCATGTTGTATTACAGCCGAAACAAGAGCCTT TGCTGGATAAATCAGTGCTGGCTGCGCAGGAAGAGAAGGCGGTTGGGGAA GGGAATGAATTAGAGGTCAAAAGTGTAGAAATGGGGAAGAAGGATAAGAT GAAAGCGTCTGAGAACAGCACAACTGGAGCTTTGGAGCGGGAGGCAGAAA CTACAGTCTTAAAAAAAAAAAAAAAAGAGGAGAGTAGCGATATGGATGCT GAAAGTTCACATCACGACATCGCTGTTGATGCGTTGAATGACATCTCTAC GGATTGGAGAGAGGAGAAGGAGGAGGAGAAGGAGGAAGAGAAGGAGGAAA AAATTGAAGAGCAACAGGAGGAGATGGAGAATATGGAGAAGGTGGTGGAG GAAGAAGAAGAAGACGGAAACATAGATGAAGTGGATGAGCAGCCTCAGCG TAAGGAGCAGCAGCAGCAGCATGTCGAAGAGCCGCAGGAGGCTGGTTTAG ATCTCGCTGCTGTCCCAGTCGATAAGCCCCATGCTGACACGGATTTGGCC CGTGGCACCCAGAACAAAAAGCAAGAAGCCCCTTACCAGCAGCAGCAGCA GCATGTGGAGCAGAAGCAGAAGCAGAAGCATGTGGAGAGCGGAGATGCCA AGGAAGAGACCAAAAACGAGGTGATGGTACCTCAAATGTTGTATTGCTTG CCGGGAGGTGGCTTCAATGATATTGTCGTCCAACTGTGGCGGTGCGTGAA ATATGCCGTCAAGACCGATCGAGTGCTGATCCTCGGGTGGGAGAATTACT TGCCTGTACTACCCCCTTATGAGCAGTACTTTGATCTGAAAAACATCCCG GGCCTTAAGCTCATGTCACAATGGGAGGCGGCGTCTATCATTCGCGCTGC ACAGGCACGTGGACAGGAAGTGACGCATCCATCGAAGCAAAGGTTGAGCT TGACGGCCTTGCTGGGTACGGGGGAAGAAAGGGAGGATGGCCCCCCGTTC TTCATTGATGTTGCCAGTCTACCGAATTATGTATTTCATCCCAAAAAACA GTATACGTACCATGTCCTACTGTATCACAAAAAGGGAAACCAAGGCACGC CTGAGGCTACCTTAAAACACCTCATCTTCTCCCGAGAAATCAAACAAACC TTCCTCTCCCGTTGGAGCCAGCTCCCAAAACCCTACATAGGCATGCATGT CCGAGGAACGGACCGAAAATGCGGTAATAAGATGACACTCAAAGTATTTG AAAAGACTCAAACGTTACGTGAACATTTAAAAGGAGCGCCTGTCTACCTC GCGACAGACAACCCCGAAGCAGCTGTTGAGCAGATACAGGAGTTGAAAGA GAAGCAGGGAAGGGAGATTACGTCATTCACATATTTTCCGGCCAAGAAGG AGGAGGAGAATAGGGGAGGGAAGAAGGAAAGGGAGGCAAATGTAATGCCG CTTCATTTAAACAAGGTACTGAGCGACGAGGAGAAGCACCAGACAAACAT TGACGGGTTTGTGGATTTGCTGTTGTTGGCTTTCAGTGAGAAGTTCATCA TGTCTTGTGGCGGGTACTCGCGTTTGGCCGGGCTGTTGCATTGGGATAAG AGTATTGCGCTCAGTACGTTGGGCTTGGAGCTGGAGGAGGGTGGTGACGA CGATGTGAATGCAGTCTTGTCGGAGGCGTGGAGGGAGCAACAGAAAGCAA ATACGAAAGGACAAGGAACAGTCGCATGA back to top
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