NO11G01960, NO11G01960 (gene) Nannochloropsis oceanica

Overview
NameNO11G01960
Unique NameNO11G01960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2468
Alignment locationchr11:633946..636413 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:633946..636413 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO11G01960 vs. NCBI_GenBank
Match: EWM25017.1 (hypothetical protein Naga_100068g6 [Nannochloropsis gaditana])

HSP 1 Score: 625.2 bits (1611), Expect = 1.700e-175
Identity = 299/345 (86.67%), Postives = 325/345 (94.20%), Query Frame = 0 
Query:  132 MQIFRKTSLVVVSLALLGVSTANKPVLNMHEDDFDSIRGLAEYITSSTGLSSAKNALDQGLVSSDFELETINPGGFLGHGRRLGATNEECGAFLAASLAPHLWECFDMAQTVLNLVKQENCQTSYDFSQANMHRICTNQCHDVLHKTLSTMSSAGCSASMLKQSCNECASGEKCVGTKCRTVCSPSLPCPCSYACEDGACIPPKNSEVAINDLGVNGYKIALEYLCTTSPITKDYCFADIFEVLNAVDASTFCSKMKPIGCCTGTVFNFVTECATSNDTLSTNVGSISLNDLQQFCPEVDFKTPCANAPVLEPGACLDTYYLSGAWSVRASAMVTLALASLTTVA 477
            MQIF+KTS ++++ ALLG+S A +P ++MH DDFD+IRG+AEYITSS GLSSAK ALD GLVSSDFELET++PGGF+GHGRRLGAT+EECGAFLAASLAPHLWECFDMAQTVLNLVKQENC+TSYDFSQANMHRICTNQCHDVLHKTLSTMSSAGCSAS+LKQSCNECASGEKCVGTKCRTVCSPSLPCPCSYACE GACIPPKNSEV +ND+GVNGYKIALEYLCTTSP  K+YCFADIF VLNA+DASTFCSKMKPIGCCTGTVFNFVTECATSNDTLST+ GSISL DLQQFCPE+DFKTPCANAP LEPGACLDTYYLS AWS+RAS ++TLALASL TVA
Sbjct:   84 MQIFKKTSFLLLTPALLGLSHAFEPTVDMHVDDFDAIRGIAEYITSSAGLSSAKGALDHGLVSSDFELETVSPGGFMGHGRRLGATDEECGAFLAASLAPHLWECFDMAQTVLNLVKQENCKTSYDFSQANMHRICTNQCHDVLHKTLSTMSSAGCSASILKQSCNECASGEKCVGTKCRTVCSPSLPCPCSYACESGACIPPKNSEVTVNDMGVNGYKIALEYLCTTSPTNKNYCFADIFGVLNALDASTFCSKMKPIGCCTGTVFNFVTECATSNDTLSTSAGSISLTDLQQFCPEIDFKTPCANAPPLEPGACLDTYYLSSAWSMRASVVLTLALASLATVA 428
[Close]
BLAST of NO11G01960 vs. NCBI_GenBank
Match: XP_005854873.1 (hypothetical protein NGA_0377400 [Nannochloropsis gaditana CCMP526] >EKU21481.1 hypothetical protein NGA_0377400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 171.4 bits (433), Expect = 6.800e-39
Identity = 87/263 (33.08%), Postives = 135/263 (51.33%), Query Frame = 0 
Query:  210 HGRRLGATNEECGAFLAASLAPHLWECFDMAQTVLNL-VKQENCQTSYDFSQANMHRICTNQCHDVLHKTLSTMSSAGCSA-SMLKQSCNECASGEKCVGTKCRTVCSPSLPCPCSYACEDGACIPPKNSEVAINDLGVNGYKIALEYLCTTSPIT----------------------KDYCFADIFEVLNAVDASTFCSKMKPIGCCTGTVFNFVTECATSNDTLSTNVGS-ISLNDLQQFCPEVDFKTPCANAPVLEPGAC 448
            H +   A+ ++C +F+   L P   EC ++A+ +  +     +C+  YDFS+  +  +C+N+C+  + + L  M+ AGCSA  + K  C++C  G  CV   CR +CS + PC C+  C +G+C       +   D+G  GYKI+LE+LC  +P+                       +DYCF+ +F  L  +     C K+   GCC GTV  +   C  +NDT+  N G+ + L  L  FCP+VDFKT C+NAP    G C
Sbjct:   59 HAQMAPASQDDCNSFMTLLLGPLTTECAELARDLQTVATTSTDCKRVYDFSKPKLDGMCSNKCYPTMVRALDGMAKAGCSADGVTKMMCDQCEEGTACVEGVCRPLCSATKPCACNDECVNGSCQSSDQGGLQRTDMGTFGYKISLEHLCLKAPLALPDTDAPDASTAAKEQQMALAKEDYCFSSVFNALEGLTPDV-CDKLAATGCCAGTVMQYGVTCGLANDTVKLNGGAPMQLTALANFCPDVDFKTKCSNAPAYADGMC 320
[Close]
BLAST of NO11G01960 vs. NCBI_GenBank
Match: EWM28532.1 (hypothetical protein Naga_100009g41 [Nannochloropsis gaditana])

HSP 1 Score: 171.4 bits (433), Expect = 6.800e-39
Identity = 87/263 (33.08%), Postives = 135/263 (51.33%), Query Frame = 0 
Query:  210 HGRRLGATNEECGAFLAASLAPHLWECFDMAQTVLNL-VKQENCQTSYDFSQANMHRICTNQCHDVLHKTLSTMSSAGCSA-SMLKQSCNECASGEKCVGTKCRTVCSPSLPCPCSYACEDGACIPPKNSEVAINDLGVNGYKIALEYLCTTSPIT----------------------KDYCFADIFEVLNAVDASTFCSKMKPIGCCTGTVFNFVTECATSNDTLSTNVGS-ISLNDLQQFCPEVDFKTPCANAPVLEPGAC 448
            H +   A+ ++C +F+   L P   EC ++A+ +  +     +C+  YDFS+  +  +C+N+C+  + + L  M+ AGCSA  + K  C++C  G  CV   CR +CS + PC C+  C +G+C       +   D+G  GYKI+LE+LC  +P+                       +DYCF+ +F  L  +     C K+   GCC GTV  +   C  +NDT+  N G+ + L  L  FCP+VDFKT C+NAP    G C
Sbjct:   59 HAQMAPASQDDCNSFMTLLLGPLTTECAELARDLQTVATTSTDCKRVYDFSKPKLDGMCSNKCYPTMVRALDGMAKAGCSADGVTKMMCDQCEEGTACVEGVCRPLCSATKPCACNDECVNGSCQSSDQGGLQRTDMGTFGYKISLEHLCLKAPLALPDTDAPDASTAAKEQQMALAKEDYCFSSVFNALEGLTPDV-CDKLAATGCCAGTVMQYGVTCGLANDTVKLNGGAPMQLTALANFCPDVDFKTKCSNAPAYADGMC 320
The following BLAST results are available for this feature:
BLAST of NO11G01960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM25017.11.700e-17586.67hypothetical protein Naga_100068g6 [Nannochloropsi... [more]
XP_005854873.16.800e-3933.08hypothetical protein NGA_0377400 [Nannochloropsis ... [more]
EWM28532.16.800e-3933.08hypothetical protein Naga_100009g41 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002066NSK002066Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01960.1NO11G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591340gene_5086Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100068g6gene5479Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01960.1NO11G01960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01960 ID=NO11G01960|Name=NO11G01960|organism=Nannochloropsis oceanica|type=gene|length=2468bp
AACTACCGTAACCTTTGAGAAGCGAAAGGAGCTTCTGTCTTGTATCTTAC
TTCTTTACTGTCCCATGCACCCCTGTTTTTCACTGGCTCACGTTTGTCGC
ACGTTCGTGCCTGTCAACGGCAGACGCGTTGTTTCCAGTGGGAAGCCAAG
ACGGGGAACGCAGCGGGTCGCACAAGCCAGCAAGATCTCTTTTCCGGAGC
CAGTGCGCCATCGATGCGCTGAACATTTCCCTTTGTCATATGTGTCCCTG
GATACACAGGAGAACCCGCCAACCGGGACGAGGGCCTGTCCTCTATCACT
GCATGCGAGGTTGCCCTCTGGCAATGCGCTGCCAAGTACACGGAGGGATG
CGCGGTGCACTGGATGGCGTCGTCCCTTGCTTGAGACGCTGGCTCCTGTC
GTTCTCAAACACGTCTTACCTTGCAACTCCACGCTCAGCCCAGTCACCCA
CTCACACCCACCTCTATCCTCCATCCACACAATCTGACAGGGATAGGCAG
CTCTGCGCCCTACGTCCACCACCACCGCAAGCCACTTCTCCAGCTCGCTC
TCATAGCGTGCGCACAAGGAAAGACTGCCGTCCGTGTTTCAACTTCATAC
CTCCGCACAACCTACACATACCACAAGCAACCATGCAGATCTTCAGGAAG
ACGTCCCTGGTGGTCGTCTCTCTAGCACTTCTCGGCGTGAGCACCGCCAA
CAAGCCGGTCCTGAACATGCATGAAGACGACTTCGACTCGATTCGCGGCC
TAGCCGAGTACATTACCAGCTCCACGGGGCTGTCCAGCGCCAAGAATGCC
CTAGACCAGGGCTTGGTTAGCAGCGATTTCGAGTTGGAAACTATCAACCC
GGGAGGATTTTTGGGGCATGGCCGGCGGTTGGGGGCTACAAACGAGGAGT
GCGGTGCCTTTTTGGCTGCTTCTCTGGCACCCCATTTGTGGGAATGCTTC
GATATGGCCCAGACAGTGTTGAACTTAGTAAAGCAGGAGAACTGTCAGAC
GAGCTATGATTTCTCTCAGGCGAACATGCACCGAATCTGTACCAACCAGT
GCCACGACGTCCTGCACAAGACGCTCAGCACCATGTCTTCCGCTGGCTGC
TCCGCCTCAATGCTTAAGCAGTCATGTAATGAGTGCGCCTCGGGCGAGAA
GTGCGTGGGGACCAAGTGCCGTACCGTCTGCTCTCCCTCCCTGCCTTGCC
CTTGCTCTTATGCCTGCGAAGATGGGGCTTGCATCCCTCCCAAGAACTCG
GAGGTGGCTATCAACGACTTGGGCGTGAACGGCTACAAAATCGCCTTGGA
ATATCTGTGCACGACGTCTCCCATCACCAAGGACTACTGCTTTGCCGACA
TTTTCGAGGTGCTCAACGCTGTGGATGCCTCGACTTTCTGCAGCAAGATG
AAGCCCATCGGCTGCTGCACGGGGACAGTCTTCAACTTTGTCACCGAGTG
CGCGACAAGCAATGATACCCTCTCCACTAATGTCGGCTCGATTTCTCTGA
ATGACTTACAGCAATTCTGCCCAGAGGTCGACTTCAAGACGCCCTGTGCA
AATGCTCCTGTGCTTGAGCCGGGGGCCTGCCTCGATACTTATTACTTGTC
TGGTGCCTGGTCGGTTCGTGCCTCCGCGATGGTGACTTTGGCATTGGCTT
CCCTTACAACTGTGGCCGTGACGCTCATCCTTTGAATTTAAAATTGAGTA
GTTCTAAGCGTAGTGTGTAGAAATGATGGAGAGTACGAAGAAAAGGCACG
CGCCTGGTAAGATAATTTATGGAGATGAAAAGTTTGGCGGCGGCAAGAGA
GGAATTGTGAGTAGAAAGAAACGGAAGACCCTTGTGGTTTTCTGGCTTGG
ATTTGTGCGATGGAGGAGGAAAAAGAGAGAGAGAGAATCGAAGAGTATGA
GGGGCGGGCAGGAAGGTCTTCTGACGTGCCTTTTCTCTTTTCTGCCATGA
TCATTTTGAGTTTCAGTTTTCGAGTGTAGCAAATAATAAAACAACAACCA
ACAAAAAGACATTAAAAAACAAAAGAGGAAGAAAGAGAGAGTCTTAGAGG
TGAGAGAGGAGATGAAAAGGGGGCGTCTTATAAACATATATATATATATA
TATGTATGTGTGTGTAGACTTCAGGATGAGCGAGGAAAATGAGGAAATAA
TGGGGGAGTGAAAAAGAGTGAGAGTGAGCAGCGTCTGCGACTAGAGCATG
GTGGATAGGACAAAGTGAAAGCAAATTTTCAGCACTATCAGAGCACAAGT
CCTAGAATGGAGTAAGAAAGTAAGGAAGATCGTGCAAGGAGGGGGGGAAA
GAGGTGGAGAAAACGAGAATCAATCAAATGTGGTGGACAGAGGAAGGTGG
TCGACTGGCAAACGAAGGAAAGAAAGCAGTGAAATTGCCTTGGTTATGGA
GAGATGGAAGGTGGACGGAAGGAGAGAGGAAACACATCAATCAAAAAAGA
AATGTCCTTCGGAATCAC
back to top

protein sequence of NO11G01960.1

>NO11G01960.1-protein ID=NO11G01960.1-protein|Name=NO11G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=482bp
MCPWIHRRTRQPGRGPVLYHCMRGCPLAMRCQVHGGMRGALDGVVPCLRR
WLLSFSNTSYLATPRSAQSPTHTHLYPPSTQSDRDRQLCALRPPPPQATS
PARSHSVRTRKDCRPCFNFIPPHNLHIPQATMQIFRKTSLVVVSLALLGV
STANKPVLNMHEDDFDSIRGLAEYITSSTGLSSAKNALDQGLVSSDFELE
TINPGGFLGHGRRLGATNEECGAFLAASLAPHLWECFDMAQTVLNLVKQE
NCQTSYDFSQANMHRICTNQCHDVLHKTLSTMSSAGCSASMLKQSCNECA
SGEKCVGTKCRTVCSPSLPCPCSYACEDGACIPPKNSEVAINDLGVNGYK
IALEYLCTTSPITKDYCFADIFEVLNAVDASTFCSKMKPIGCCTGTVFNF
VTECATSNDTLSTNVGSISLNDLQQFCPEVDFKTPCANAPVLEPGACLDT
YYLSGAWSVRASAMVTLALASLTTVAVTLIL*
back to top
Synonyms
Publications