|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr11 | genome | chr11:633946..636413 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G01960.1 vs.
Match: EWM25017.1 (hypothetical protein Naga_100068g6 [Nannochloropsis gaditana]) HSP 1 Score: 625.2 bits (1611), Expect = 1.700e-175 Identity = 299/345 (86.67%), Postives = 325/345 (94.20%), Query Frame = 0
Query: 132 MQIFRKTSLVVVSLALLGVSTANKPVLNMHEDDFDSIRGLAEYITSSTGLSSAKNALDQGLVSSDFELETINPGGFLGHGRRLGATNEECGAFLAASLAPHLWECFDMAQTVLNLVKQENCQTSYDFSQANMHRICTNQCHDVLHKTLSTMSSAGCSASMLKQSCNECASGEKCVGTKCRTVCSPSLPCPCSYACEDGACIPPKNSEVAINDLGVNGYKIALEYLCTTSPITKDYCFADIFEVLNAVDASTFCSKMKPIGCCTGTVFNFVTECATSNDTLSTNVGSISLNDLQQFCPEVDFKTPCANAPVLEPGACLDTYYLSGAWSVRASAMVTLALASLTTVA 477
MQIF+KTS ++++ ALLG+S A +P ++MH DDFD+IRG+AEYITSS GLSSAK ALD GLVSSDFELET++PGGF+GHGRRLGAT+EECGAFLAASLAPHLWECFDMAQTVLNLVKQENC+TSYDFSQANMHRICTNQCHDVLHKTLSTMSSAGCSAS+LKQSCNECASGEKCVGTKCRTVCSPSLPCPCSYACE GACIPPKNSEV +ND+GVNGYKIALEYLCTTSP K+YCFADIF VLNA+DASTFCSKMKPIGCCTGTVFNFVTECATSNDTLST+ GSISL DLQQFCPE+DFKTPCANAP LEPGACLDTYYLS AWS+RAS ++TLALASL TVA
Sbjct: 84 MQIFKKTSFLLLTPALLGLSHAFEPTVDMHVDDFDAIRGIAEYITSSAGLSSAKGALDHGLVSSDFELETVSPGGFMGHGRRLGATDEECGAFLAASLAPHLWECFDMAQTVLNLVKQENCKTSYDFSQANMHRICTNQCHDVLHKTLSTMSSAGCSASILKQSCNECASGEKCVGTKCRTVCSPSLPCPCSYACESGACIPPKNSEVTVNDMGVNGYKIALEYLCTTSPTNKNYCFADIFGVLNALDASTFCSKMKPIGCCTGTVFNFVTECATSNDTLSTSAGSISLTDLQQFCPEIDFKTPCANAPPLEPGACLDTYYLSSAWSMRASVVLTLALASLATVA 428
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G01960.1 ID=NO11G01960.1|Name=NO11G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2468bp
AACTACCGTAACCTTTGAGAAGCGAAAGGAGCTTCTGTCTTGTATCTTAC
TTCTTTACTGTCCCATGCACCCCTGTTTTTCACTGGCTCACGTTTGTCGC
ACGTTCGTGCCTGTCAACGGCAGACGCGTTGTTTCCAGTGGGAAGCCAAG
ACGGGGAACGCAGCGGGTCGCACAAGCCAGCAAGATCTCTTTTCCGGAGC
CAGTGCGCCATCGATGCGCTGAACATTTCCCTTTGTCATATGTGTCCCTG
GATACACAGGAGAACCCGCCAACCGGGACGAGGGCCTGTCCTCTATCACT
GCATGCGAGGTTGCCCTCTGGCAATGCGCTGCCAAGTACACGGAGGGATG
CGCGGTGCACTGGATGGCGTCGTCCCTTGCTTGAGACGCTGGCTCCTGTC
GTTCTCAAACACGTCTTACCTTGCAACTCCACGCTCAGCCCAGTCACCCA
CTCACACCCACCTCTATCCTCCATCCACACAATCTGACAGGGATAGGCAG
CTCTGCGCCCTACGTCCACCACCACCGCAAGCCACTTCTCCAGCTCGCTC
TCATAGCGTGCGCACAAGGAAAGACTGCCGTCCGTGTTTCAACTTCATAC
CTCCGCACAACCTACACATACCACAAGCAACCATGCAGATCTTCAGGAAG
ACGTCCCTGGTGGTCGTCTCTCTAGCACTTCTCGGCGTGAGCACCGCCAA
CAAGCCGGTCCTGAACATGCATGAAGACGACTTCGACTCGATTCGCGGCC
TAGCCGAGTACATTACCAGCTCCACGGGGCTGTCCAGCGCCAAGAATGCC
CTAGACCAGGGCTTGGTTAGCAGCGATTTCGAGTTGGAAACTATCAACCC
GGGAGGATTTTTGGGGCATGGCCGGCGGTTGGGGGCTACAAACGAGGAGT
GCGGTGCCTTTTTGGCTGCTTCTCTGGCACCCCATTTGTGGGAATGCTTC
GATATGGCCCAGACAGTGTTGAACTTAGTAAAGCAGGAGAACTGTCAGAC
GAGCTATGATTTCTCTCAGGCGAACATGCACCGAATCTGTACCAACCAGT
GCCACGACGTCCTGCACAAGACGCTCAGCACCATGTCTTCCGCTGGCTGC
TCCGCCTCAATGCTTAAGCAGTCATGTAATGAGTGCGCCTCGGGCGAGAA
GTGCGTGGGGACCAAGTGCCGTACCGTCTGCTCTCCCTCCCTGCCTTGCC
CTTGCTCTTATGCCTGCGAAGATGGGGCTTGCATCCCTCCCAAGAACTCG
GAGGTGGCTATCAACGACTTGGGCGTGAACGGCTACAAAATCGCCTTGGA
ATATCTGTGCACGACGTCTCCCATCACCAAGGACTACTGCTTTGCCGACA
TTTTCGAGGTGCTCAACGCTGTGGATGCCTCGACTTTCTGCAGCAAGATG
AAGCCCATCGGCTGCTGCACGGGGACAGTCTTCAACTTTGTCACCGAGTG
CGCGACAAGCAATGATACCCTCTCCACTAATGTCGGCTCGATTTCTCTGA
ATGACTTACAGCAATTCTGCCCAGAGGTCGACTTCAAGACGCCCTGTGCA
AATGCTCCTGTGCTTGAGCCGGGGGCCTGCCTCGATACTTATTACTTGTC
TGGTGCCTGGTCGGTTCGTGCCTCCGCGATGGTGACTTTGGCATTGGCTT
CCCTTACAACTGTGGCCGTGACGCTCATCCTTTGAATTTAAAATTGAGTA
GTTCTAAGCGTAGTGTGTAGAAATGATGGAGAGTACGAAGAAAAGGCACG
CGCCTGGTAAGATAATTTATGGAGATGAAAAGTTTGGCGGCGGCAAGAGA
GGAATTGTGAGTAGAAAGAAACGGAAGACCCTTGTGGTTTTCTGGCTTGG
ATTTGTGCGATGGAGGAGGAAAAAGAGAGAGAGAGAATCGAAGAGTATGA
GGGGCGGGCAGGAAGGTCTTCTGACGTGCCTTTTCTCTTTTCTGCCATGA
TCATTTTGAGTTTCAGTTTTCGAGTGTAGCAAATAATAAAACAACAACCA
ACAAAAAGACATTAAAAAACAAAAGAGGAAGAAAGAGAGAGTCTTAGAGG
TGAGAGAGGAGATGAAAAGGGGGCGTCTTATAAACATATATATATATATA
TATGTATGTGTGTGTAGACTTCAGGATGAGCGAGGAAAATGAGGAAATAA
TGGGGGAGTGAAAAAGAGTGAGAGTGAGCAGCGTCTGCGACTAGAGCATG
GTGGATAGGACAAAGTGAAAGCAAATTTTCAGCACTATCAGAGCACAAGT
CCTAGAATGGAGTAAGAAAGTAAGGAAGATCGTGCAAGGAGGGGGGGAAA
GAGGTGGAGAAAACGAGAATCAATCAAATGTGGTGGACAGAGGAAGGTGG
TCGACTGGCAAACGAAGGAAAGAAAGCAGTGAAATTGCCTTGGTTATGGA
GAGATGGAAGGTGGACGGAAGGAGAGAGGAAACACATCAATCAAAAAAGA
AATGTCCTTCGGAATCAC back to topprotein sequence of NO11G01960.1 >NO11G01960.1-protein ID=NO11G01960.1-protein|Name=NO11G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=482bp
MCPWIHRRTRQPGRGPVLYHCMRGCPLAMRCQVHGGMRGALDGVVPCLRR
WLLSFSNTSYLATPRSAQSPTHTHLYPPSTQSDRDRQLCALRPPPPQATS
PARSHSVRTRKDCRPCFNFIPPHNLHIPQATMQIFRKTSLVVVSLALLGV
STANKPVLNMHEDDFDSIRGLAEYITSSTGLSSAKNALDQGLVSSDFELE
TINPGGFLGHGRRLGATNEECGAFLAASLAPHLWECFDMAQTVLNLVKQE
NCQTSYDFSQANMHRICTNQCHDVLHKTLSTMSSAGCSASMLKQSCNECA
SGEKCVGTKCRTVCSPSLPCPCSYACEDGACIPPKNSEVAINDLGVNGYK
IALEYLCTTSPITKDYCFADIFEVLNAVDASTFCSKMKPIGCCTGTVFNF
VTECATSNDTLSTNVGSISLNDLQQFCPEVDFKTPCANAPVLEPGACLDT
YYLSGAWSVRASAMVTLALASLTTVAVTLIL* back to topmRNA from alignment at chr11:633946..636413- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G01960.1 ID=NO11G01960.1|Name=NO11G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2468bp|location=Sequence derived from alignment at chr11:633946..636413- (Nannochloropsis oceanica)
AACTACCGTAACCTTTGAGAAGCGAAAGGAGCTTCTGTCTTGTATCTTAC
TTCTTTACTGTCCCATGCACCCCTGTTTTTCACTGGCTCACGTTTGTCGC
ACGTTCGTGCCTGTCAACGGCAGACGCGTTGTTTCCAGTGGGAAGCCAAG
ACGGGGAACGCAGCGGGTCGCACAAGCCAGCAAGATCTCTTTTCCGGAGC
CAGTGCGCCATCGATGCGCTGAACATTTCCCTTTGTCATATGTGTCCCTG
GATACACAGGAGAACCCGCCAACCGGGACGAGGGCCTGTCCTCTATCACT
GCATGCGAGGTTGCCCTCTGGCAATGCGCTGCCAAGTACACGGAGGGATG
CGCGGTGCACTGGATGGCGTCGTCCCTTGCTTGAGACGCTGGCTCCTGTC
GTTCTCAAACACGTCTTACCTTGCAACTCCACGCTCAGCCCAGTCACCCA
CTCACACCCACCTCTATCCTCCATCCACACAATCTGACAGGGATAGGCAG
CTCTGCGCCCTACGTCCACCACCACCGCAAGCCACTTCTCCAGCTCGCTC
TCATAGCGTGCGCACAAGGAAAGACTGCCGTCCGTGTTTCAACTTCATAC
CTCCGCACAACCTACACATACCACAAGCAACCATGCAGATCTTCAGGAAG
ACGTCCCTGGTGGTCGTCTCTCTAGCACTTCTCGGCGTGAGCACCGCCAA
CAAGCCGGTCCTGAACATGCATGAAGACGACTTCGACTCGATTCGCGGCC
TAGCCGAGTACATTACCAGCTCCACGGGGCTGTCCAGCGCCAAGAATGCC
CTAGACCAGGGCTTGGTTAGCAGCGATTTCGAGTTGGAAACTATCAACCC
GGGAGGATTTTTGGGGCATGGCCGGCGGTTGGGGGCTACAAACGAGGAGT
GCGGTGCCTTTTTGGCTGCTTCTCTGGCACCCCATTTGTGGGAATGCTTC
GATATGGCCCAGACAGTGTTGAACTTAGTAAAGCAGGAGAACTGTCAGAC
GAGCTATGATTTCTCTCAGGCGAACATGCACCGAATCTGTACCAACCAGT
GCCACGACGTCCTGCACAAGACGCTCAGCACCATGTCTTCCGCTGGCTGC
TCCGCCTCAATGCTTAAGCAGTCATGTAATGAGTGCGCCTCGGGCGAGAA
GTGCGTGGGGACCAAGTGCCGTACCGTCTGCTCTCCCTCCCTGCCTTGCC
CTTGCTCTTATGCCTGCGAAGATGGGGCTTGCATCCCTCCCAAGAACTCG
GAGGTGGCTATCAACGACTTGGGCGTGAACGGCTACAAAATCGCCTTGGA
ATATCTGTGCACGACGTCTCCCATCACCAAGGACTACTGCTTTGCCGACA
TTTTCGAGGTGCTCAACGCTGTGGATGCCTCGACTTTCTGCAGCAAGATG
AAGCCCATCGGCTGCTGCACGGGGACAGTCTTCAACTTTGTCACCGAGTG
CGCGACAAGCAATGATACCCTCTCCACTAATGTCGGCTCGATTTCTCTGA
ATGACTTACAGCAATTCTGCCCAGAGGTCGACTTCAAGACGCCCTGTGCA
AATGCTCCTGTGCTTGAGCCGGGGGCCTGCCTCGATACTTATTACTTGTC
TGGTGCCTGGTCGGTTCGTGCCTCCGCGATGGTGACTTTGGCATTGGCTT
CCCTTACAACTGTGGCCGTGACGCTCATCCTTTGAATTTAAAATTGAGTA
GTTCTAAGCGTAGTGTGTAGAAATGATGGAGAGTACGAAGAAAAGGCACG
CGCCTGGTAAGATAATTTATGGAGATGAAAAGTTTGGCGGCGGCAAGAGA
GGAATTGTGAGTAGAAAGAAACGGAAGACCCTTGTGGTTTTCTGGCTTGG
ATTTGTGCGATGGAGGAGGAAAAAGAGAGAGAGAGAATCGAAGAGTATGA
GGGGCGGGCAGGAAGGTCTTCTGACGTGCCTTTTCTCTTTTCTGCCATGA
TCATTTTGAGTTTCAGTTTTCGAGTGTAGCAAATAATAAAACAACAACCA
ACAAAAAGACATTAAAAAACAAAAGAGGAAGAAAGAGAGAGTCTTAGAGG
TGAGAGAGGAGATGAAAAGGGGGCGTCTTATAAACATATATATATATATA
TATGTATGTGTGTGTAGACTTCAGGATGAGCGAGGAAAATGAGGAAATAA
TGGGGGAGTGAAAAAGAGTGAGAGTGAGCAGCGTCTGCGACTAGAGCATG
GTGGATAGGACAAAGTGAAAGCAAATTTTCAGCACTATCAGAGCACAAGT
CCTAGAATGGAGTAAGAAAGTAAGGAAGATCGTGCAAGGAGGGGGGGAAA
GAGGTGGAGAAAACGAGAATCAATCAAATGTGGTGGACAGAGGAAGGTGG
TCGACTGGCAAACGAAGGAAAGAAAGCAGTGAAATTGCCTTGGTTATGGA
GAGATGGAAGGTGGACGGAAGGAGAGAGGAAACACATCAATCAAAAAAGA
AATGTCCTTCGGAATCAC back to topCoding sequence (CDS) from alignment at chr11:633946..636413- >NO11G01960.1 ID=NO11G01960.1|Name=NO11G01960.1|organism=Nannochloropsis oceanica|type=CDS|length=1446bp|location=Sequence derived from alignment at chr11:633946..636413- (Nannochloropsis oceanica)
ATGTGTCCCTGGATACACAGGAGAACCCGCCAACCGGGACGAGGGCCTGT
CCTCTATCACTGCATGCGAGGTTGCCCTCTGGCAATGCGCTGCCAAGTAC
ACGGAGGGATGCGCGGTGCACTGGATGGCGTCGTCCCTTGCTTGAGACGC
TGGCTCCTGTCGTTCTCAAACACGTCTTACCTTGCAACTCCACGCTCAGC
CCAGTCACCCACTCACACCCACCTCTATCCTCCATCCACACAATCTGACA
GGGATAGGCAGCTCTGCGCCCTACGTCCACCACCACCGCAAGCCACTTCT
CCAGCTCGCTCTCATAGCGTGCGCACAAGGAAAGACTGCCGTCCGTGTTT
CAACTTCATACCTCCGCACAACCTACACATACCACAAGCAACCATGCAGA
TCTTCAGGAAGACGTCCCTGGTGGTCGTCTCTCTAGCACTTCTCGGCGTG
AGCACCGCCAACAAGCCGGTCCTGAACATGCATGAAGACGACTTCGACTC
GATTCGCGGCCTAGCCGAGTACATTACCAGCTCCACGGGGCTGTCCAGCG
CCAAGAATGCCCTAGACCAGGGCTTGGTTAGCAGCGATTTCGAGTTGGAA
ACTATCAACCCGGGAGGATTTTTGGGGCATGGCCGGCGGTTGGGGGCTAC
AAACGAGGAGTGCGGTGCCTTTTTGGCTGCTTCTCTGGCACCCCATTTGT
GGGAATGCTTCGATATGGCCCAGACAGTGTTGAACTTAGTAAAGCAGGAG
AACTGTCAGACGAGCTATGATTTCTCTCAGGCGAACATGCACCGAATCTG
TACCAACCAGTGCCACGACGTCCTGCACAAGACGCTCAGCACCATGTCTT
CCGCTGGCTGCTCCGCCTCAATGCTTAAGCAGTCATGTAATGAGTGCGCC
TCGGGCGAGAAGTGCGTGGGGACCAAGTGCCGTACCGTCTGCTCTCCCTC
CCTGCCTTGCCCTTGCTCTTATGCCTGCGAAGATGGGGCTTGCATCCCTC
CCAAGAACTCGGAGGTGGCTATCAACGACTTGGGCGTGAACGGCTACAAA
ATCGCCTTGGAATATCTGTGCACGACGTCTCCCATCACCAAGGACTACTG
CTTTGCCGACATTTTCGAGGTGCTCAACGCTGTGGATGCCTCGACTTTCT
GCAGCAAGATGAAGCCCATCGGCTGCTGCACGGGGACAGTCTTCAACTTT
GTCACCGAGTGCGCGACAAGCAATGATACCCTCTCCACTAATGTCGGCTC
GATTTCTCTGAATGACTTACAGCAATTCTGCCCAGAGGTCGACTTCAAGA
CGCCCTGTGCAAATGCTCCTGTGCTTGAGCCGGGGGCCTGCCTCGATACT
TATTACTTGTCTGGTGCCTGGTCGGTTCGTGCCTCCGCGATGGTGACTTT
GGCATTGGCTTCCCTTACAACTGTGGCCGTGACGCTCATCCTTTGA back to top
|