NO11G01890, NO11G01890 (gene) Nannochloropsis oceanica

Overview
NameNO11G01890
Unique NameNO11G01890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1148
Alignment locationchr11:622388..623535 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:622388..623535 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO11G01890 vs. NCBI_GenBank
Match: EWM25055.1 (hypothetical protein Naga_100049g3 [Nannochloropsis gaditana])

HSP 1 Score: 255.0 bits (650), Expect = 2.500e-64
Identity = 151/255 (59.22%), Postives = 176/255 (69.02%), Query Frame = 0 
Query:    3 IMTRRRALGVSVLPILLLMTLLTTTNAFVLPAA--SSLPNPQTRMAACKSSMASEAIGKVLAACSLLLAGGPNLAGAMXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLNDFLRAVKSVKNELTSEKATDLQFVQKAFDVEAVTNAVDGTLDAQMKGAGMNQASMVGKRKIVDKVLRQVLSDVIVVEDILRDLPPEKTGLARLKKVGKPLGKLEKDLQRLTGALTSEGSEDTAGAAGLAKPLFSLCADGYLLCDPQ 256
            I+ RRR         L++  L  +  AFV P A  SS P   T+MAA KS ++   + K    CSLLL G P+LA A+                           EVLNDFLRAVK+VK E+TS+K TDL++VQKAFDVEAVT AVDGTLDAQM GA M+Q S+VGKRK++DKVLRQVLSDVI VEDILRD+ P KTGL+R KKVGKPLGKLE DLQRLT ALTS G++DTAGAAGL KPLFSLC DGYLLC+P+
Sbjct:    4 IVVRRRHFSTCT---LVVCALFASGTAFVFPVAPSSSRPVSHTKMAASKSPLSFGNVVKFWVGCSLLLTGHPSLANAV---PDSAHVVTTSTILGSSSVPSSKGVEVLNDFLRAVKAVKAEITSDKPTDLKYVQKAFDVEAVTTAVDGTLDAQMTGAAMDQVSIVGKRKVIDKVLRQVLSDVITVEDILRDMDPAKTGLSRFKKVGKPLGKLENDLQRLTSALTSNGADDTAGAAGLEKPLFSLCPDGYLLCNPE 252
The following BLAST results are available for this feature:
BLAST of NO11G01890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25055.12.500e-6459.22hypothetical protein Naga_100049g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002073NSK002073Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01890.1NO11G01890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591328gene_5079Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100049g3gene5472Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01890.1NO11G01890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01890 ID=NO11G01890|Name=NO11G01890|organism=Nannochloropsis oceanica|type=gene|length=1148bp
TGGAAGAAGGAGGAGAGGTGGCAGCAACAGGGTACCGAGATTCTCAAACT
GTCCTCGAGAGCCCAACGATGGGGGGAGGAGGTTATGGTGCTTGCAGCAG
GAAGCTGGGCTGAATAAGGGCTGATTGGGATCCACGGTGCACCCTCAATG
ACCTGCCCTTGCCTATTTTGTGAGGTTGTGAGGAGGACTGGTTAGCCTGT
GCTGTTGTGGTGCACATTGTTGCACTTTAGGTAAGGAAGCAAGTTTATCT
CTTCTCCTTCATAACGAACCTTCCCGACCCCACAGGCCACGCCGATGAAC
ATAATGACAAGAAGACGAGCCCTCGGCGTCTCTGTTCTGCCAATTTTACT
GTTGATGACACTCTTAACTACCACGAATGCCTTTGTCCTTCCCGCTGCCT
CGTCCCTCCCGAACCCACAAACAAGGATGGCCGCCTGCAAGAGCTCTATG
GCTTCAGAAGCCATAGGCAAGGTTCTAGCAGCGTGCAGCTTACTGCTAGC
TGGGGGGCCGAATCTAGCCGGCGCTATGGCCACGTCCTCTTTCTCCACAA
TGACAACGACGACGACGACGACGGTGGCCCTAAGCACGTCCCCGTCCGGT
GCTGGTGTGGAGGTCCTGAACGACTTCTTGCGGGCCGTCAAGTCGGTCAA
AAACGAGCTTACAAGCGAGAAAGCCACTGACCTTCAATTCGTGCAGAAAG
CTTTTGATGTGGAGGCAGTTACAAACGCAGTCGATGGGACGCTTGACGCC
CAGATGAAAGGGGCAGGCATGAACCAGGCATCGATGGTGGGCAAACGCAA
GATCGTCGACAAGGTGTTAAGGCAAGTGCTCTCGGACGTGATTGTCGTAG
AGGACATACTGCGGGACCTTCCCCCCGAAAAAACCGGCTTAGCAAGATTA
AAGAAGGTGGGGAAACCATTGGGTAAGCTCGAGAAGGACTTACAACGACT
GACGGGAGCGCTTACTTCAGAAGGAAGTGAGGATACGGCGGGGGCTGCGG
GATTAGCGAAGCCATTGTTTTCTTTGTGTGCAGATGGATATTTGTTGTGT
GATCCGCAGTGAGCGGAGGTAGAGGCAGAAAGATGTATGTAGGAGAAAAA
ATAGAGAATGGGAATGACAAGGAACAAAATAGAAATCACTTTGAGTGG
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protein sequence of NO11G01890.1

>NO11G01890.1-protein ID=NO11G01890.1-protein|Name=NO11G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MNIMTRRRALGVSVLPILLLMTLLTTTNAFVLPAASSLPNPQTRMAACKS
SMASEAIGKVLAACSLLLAGGPNLAGAMATSSFSTMTTTTTTTVALSTSP
SGAGVEVLNDFLRAVKSVKNELTSEKATDLQFVQKAFDVEAVTNAVDGTL
DAQMKGAGMNQASMVGKRKIVDKVLRQVLSDVIVVEDILRDLPPEKTGLA
RLKKVGKPLGKLEKDLQRLTGALTSEGSEDTAGAAGLAKPLFSLCADGYL
LCDPQ*
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Synonyms
Publications