NO11G01890.1, NO11G01890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01890.1
Unique NameNO11G01890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1148
Alignment locationchr11:622388..623535 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:622388..623535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01890.1 vs.
Match: EWM25055.1 (hypothetical protein Naga_100049g3 [Nannochloropsis gaditana])

HSP 1 Score: 271.6 bits (693), Expect = 2.600e-69
Identity = 160/255 (62.75%), Postives = 189/255 (74.12%), Query Frame = 0 
Query:    3 IMTRRRALGVSVLPILLLMTLLTTTNAFVLPAA--SSLPNPQTRMAACKSSMASEAIGKVLAACSLLLAGGPNLAGAMATSSFSTMTTTTTTTVALSTSPSGAGVEVLNDFLRAVKSVKNELTSEKATDLQFVQKAFDVEAVTNAVDGTLDAQMKGAGMNQASMVGKRKIVDKVLRQVLSDVIVVEDILRDLPPEKTGLARLKKVGKPLGKLEKDLQRLTGALTSEGSEDTAGAAGLAKPLFSLCADGYLLCDPQ 256
            I+ RRR      L   ++  L  +  AFV P A  SS P   T+MAA KS ++   + K    CSLLL G P+LA A+  S+      TT+T +  S+ PS  GVEVLNDFLRAVK+VK E+TS+K TDL++VQKAFDVEAVT AVDGTLDAQM GA M+Q S+VGKRK++DKVLRQVLSDVI VEDILRD+ P KTGL+R KKVGKPLGKLE DLQRLT ALTS G++DTAGAAGL KPLFSLC DGYLLC+P+
Sbjct:    4 IVVRRRHFSTCTL---VVCALFASGTAFVFPVAPSSSRPVSHTKMAASKSPLSFGNVVKFWVGCSLLLTGHPSLANAVPDSAH---VVTTSTILGSSSVPSSKGVEVLNDFLRAVKAVKAEITSDKPTDLKYVQKAFDVEAVTTAVDGTLDAQMTGAAMDQVSIVGKRKVIDKVLRQVLSDVITVEDILRDMDPAKTGLSRFKKVGKPLGKLENDLQRLTSALTSNGADDTAGAAGLEKPLFSLCPDGYLLCNPE 252
The following BLAST results are available for this feature:
BLAST of NO11G01890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25055.12.600e-6962.75hypothetical protein Naga_100049g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01890NO11G01890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01890.1NO11G01890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01890.1.cds1NO11G01890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01890.1 ID=NO11G01890.1|Name=NO11G01890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1148bp
TGGAAGAAGGAGGAGAGGTGGCAGCAACAGGGTACCGAGATTCTCAAACT
GTCCTCGAGAGCCCAACGATGGGGGGAGGAGGTTATGGTGCTTGCAGCAG
GAAGCTGGGCTGAATAAGGGCTGATTGGGATCCACGGTGCACCCTCAATG
ACCTGCCCTTGCCTATTTTGTGAGGTTGTGAGGAGGACTGGTTAGCCTGT
GCTGTTGTGGTGCACATTGTTGCACTTTAGGTAAGGAAGCAAGTTTATCT
CTTCTCCTTCATAACGAACCTTCCCGACCCCACAGGCCACGCCGATGAAC
ATAATGACAAGAAGACGAGCCCTCGGCGTCTCTGTTCTGCCAATTTTACT
GTTGATGACACTCTTAACTACCACGAATGCCTTTGTCCTTCCCGCTGCCT
CGTCCCTCCCGAACCCACAAACAAGGATGGCCGCCTGCAAGAGCTCTATG
GCTTCAGAAGCCATAGGCAAGGTTCTAGCAGCGTGCAGCTTACTGCTAGC
TGGGGGGCCGAATCTAGCCGGCGCTATGGCCACGTCCTCTTTCTCCACAA
TGACAACGACGACGACGACGACGGTGGCCCTAAGCACGTCCCCGTCCGGT
GCTGGTGTGGAGGTCCTGAACGACTTCTTGCGGGCCGTCAAGTCGGTCAA
AAACGAGCTTACAAGCGAGAAAGCCACTGACCTTCAATTCGTGCAGAAAG
CTTTTGATGTGGAGGCAGTTACAAACGCAGTCGATGGGACGCTTGACGCC
CAGATGAAAGGGGCAGGCATGAACCAGGCATCGATGGTGGGCAAACGCAA
GATCGTCGACAAGGTGTTAAGGCAAGTGCTCTCGGACGTGATTGTCGTAG
AGGACATACTGCGGGACCTTCCCCCCGAAAAAACCGGCTTAGCAAGATTA
AAGAAGGTGGGGAAACCATTGGGTAAGCTCGAGAAGGACTTACAACGACT
GACGGGAGCGCTTACTTCAGAAGGAAGTGAGGATACGGCGGGGGCTGCGG
GATTAGCGAAGCCATTGTTTTCTTTGTGTGCAGATGGATATTTGTTGTGT
GATCCGCAGTGAGCGGAGGTAGAGGCAGAAAGATGTATGTAGGAGAAAAA
ATAGAGAATGGGAATGACAAGGAACAAAATAGAAATCACTTTGAGTGG
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protein sequence of NO11G01890.1

>NO11G01890.1-protein ID=NO11G01890.1-protein|Name=NO11G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MNIMTRRRALGVSVLPILLLMTLLTTTNAFVLPAASSLPNPQTRMAACKS
SMASEAIGKVLAACSLLLAGGPNLAGAMATSSFSTMTTTTTTTVALSTSP
SGAGVEVLNDFLRAVKSVKNELTSEKATDLQFVQKAFDVEAVTNAVDGTL
DAQMKGAGMNQASMVGKRKIVDKVLRQVLSDVIVVEDILRDLPPEKTGLA
RLKKVGKPLGKLEKDLQRLTGALTSEGSEDTAGAAGLAKPLFSLCADGYL
LCDPQ*
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mRNA from alignment at chr11:622388..623535-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01890.1 ID=NO11G01890.1|Name=NO11G01890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1148bp|location=Sequence derived from alignment at chr11:622388..623535- (Nannochloropsis oceanica)
TGGAAGAAGGAGGAGAGGTGGCAGCAACAGGGTACCGAGATTCTCAAACT
GTCCTCGAGAGCCCAACGATGGGGGGAGGAGGTTATGGTGCTTGCAGCAG
GAAGCTGGGCTGAATAAGGGCTGATTGGGATCCACGGTGCACCCTCAATG
ACCTGCCCTTGCCTATTTTGTGAGGTTGTGAGGAGGACTGGTTAGCCTGT
GCTGTTGTGGTGCACATTGTTGCACTTTAGGTAAGGAAGCAAGTTTATCT
CTTCTCCTTCATAACGAACCTTCCCGACCCCACAGGCCACGCCGATGAAC
ATAATGACAAGAAGACGAGCCCTCGGCGTCTCTGTTCTGCCAATTTTACT
GTTGATGACACTCTTAACTACCACGAATGCCTTTGTCCTTCCCGCTGCCT
CGTCCCTCCCGAACCCACAAACAAGGATGGCCGCCTGCAAGAGCTCTATG
GCTTCAGAAGCCATAGGCAAGGTTCTAGCAGCGTGCAGCTTACTGCTAGC
TGGGGGGCCGAATCTAGCCGGCGCTATGGCCACGTCCTCTTTCTCCACAA
TGACAACGACGACGACGACGACGGTGGCCCTAAGCACGTCCCCGTCCGGT
GCTGGTGTGGAGGTCCTGAACGACTTCTTGCGGGCCGTCAAGTCGGTCAA
AAACGAGCTTACAAGCGAGAAAGCCACTGACCTTCAATTCGTGCAGAAAG
CTTTTGATGTGGAGGCAGTTACAAACGCAGTCGATGGGACGCTTGACGCC
CAGATGAAAGGGGCAGGCATGAACCAGGCATCGATGGTGGGCAAACGCAA
GATCGTCGACAAGGTGTTAAGGCAAGTGCTCTCGGACGTGATTGTCGTAG
AGGACATACTGCGGGACCTTCCCCCCGAAAAAACCGGCTTAGCAAGATTA
AAGAAGGTGGGGAAACCATTGGGTAAGCTCGAGAAGGACTTACAACGACT
GACGGGAGCGCTTACTTCAGAAGGAAGTGAGGATACGGCGGGGGCTGCGG
GATTAGCGAAGCCATTGTTTTCTTTGTGTGCAGATGGATATTTGTTGTGT
GATCCGCAGTGAGCGGAGGTAGAGGCAGAAAGATGTATGTAGGAGAAAAA
ATAGAGAATGGGAATGACAAGGAACAAAATAGAAATCACTTTGAGTGG
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Coding sequence (CDS) from alignment at chr11:622388..623535-

>NO11G01890.1 ID=NO11G01890.1|Name=NO11G01890.1|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at chr11:622388..623535- (Nannochloropsis oceanica)
ATGAACATAATGACAAGAAGACGAGCCCTCGGCGTCTCTGTTCTGCCAAT
TTTACTGTTGATGACACTCTTAACTACCACGAATGCCTTTGTCCTTCCCG
CTGCCTCGTCCCTCCCGAACCCACAAACAAGGATGGCCGCCTGCAAGAGC
TCTATGGCTTCAGAAGCCATAGGCAAGGTTCTAGCAGCGTGCAGCTTACT
GCTAGCTGGGGGGCCGAATCTAGCCGGCGCTATGGCCACGTCCTCTTTCT
CCACAATGACAACGACGACGACGACGACGGTGGCCCTAAGCACGTCCCCG
TCCGGTGCTGGTGTGGAGGTCCTGAACGACTTCTTGCGGGCCGTCAAGTC
GGTCAAAAACGAGCTTACAAGCGAGAAAGCCACTGACCTTCAATTCGTGC
AGAAAGCTTTTGATGTGGAGGCAGTTACAAACGCAGTCGATGGGACGCTT
GACGCCCAGATGAAAGGGGCAGGCATGAACCAGGCATCGATGGTGGGCAA
ACGCAAGATCGTCGACAAGGTGTTAAGGCAAGTGCTCTCGGACGTGATTG
TCGTAGAGGACATACTGCGGGACCTTCCCCCCGAAAAAACCGGCTTAGCA
AGATTAAAGAAGGTGGGGAAACCATTGGGTAAGCTCGAGAAGGACTTACA
ACGACTGACGGGAGCGCTTACTTCAGAAGGAAGTGAGGATACGGCGGGGG
CTGCGGGATTAGCGAAGCCATTGTTTTCTTTGTGTGCAGATGGATATTTG
TTGTGTGATCCGCAGTGA
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Synonyms
Publications