NO11G01850, NO11G01850 (gene) Nannochloropsis oceanica

Overview
NameNO11G01850
Unique NameNO11G01850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2507
Alignment locationchr11:609732..612238 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:609732..612238 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021320DUF2905
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO11G01850 vs. NCBI_GenBank
Match: EWM25040.1 (Protein of unknown function DUF2905 [Nannochloropsis gaditana])

HSP 1 Score: 244.2 bits (622), Expect = 3.800e-61
Identity = 125/176 (71.02%), Postives = 142/176 (80.68%), Query Frame = 0 
Query:   46 VRAKSMGVQALQRSEYERAVRLLGISNRLSP-NADTRGLLNSALAGQARMDSGRASAHRAAAATAPPWSDQHSFGRFMIKVDAAMDWAWEYLPTSAKGAITCYIHPSSRKPLAYISILILGMCLYRFVLRGPPLAFGRLPGDIYYNRGNVVVSAPLLSCFLASVAFSQVARLFQRQ 221
            +RAK++GV AL+R +Y+RA R LGIS+RL P NAD RGLLNSALAGQAR D+ RASAHRAAAATAPPWS QH  GRFM  +DA +D  W  LP++ +  IT Y HPS RKPLAY+SILI+    YRFVLRGPPL  G LPGDIYYN GNVVVSAPL SCFLAS+AFSQVARLFQR+
Sbjct:   53 LRAKALGVDALRRGDYDRAARFLGISSRLLPENADIRGLLNSALAGQARTDTRRASAHRAAAATAPPWSPQHVSGRFMNGLDAVLDKVWASLPSAGQNLITRYTHPSMRKPLAYVSILIITAATYRFVLRGPPLVLGHLPGDIYYNSGNVVVSAPLFSCFLASMAFSQVARLFQRR 228
The following BLAST results are available for this feature:
BLAST of NO11G01850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25040.13.800e-6171.02Protein of unknown function DUF2905 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002078NSK002078Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01850.1NO11G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591314gene_5072Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100049g8gene5468Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01850.1NO11G01850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01850 ID=NO11G01850|Name=NO11G01850|organism=Nannochloropsis oceanica|type=gene|length=2507bp
ATTCACGTTTTTTCTCCTATTCGTAAGTGATGTTGCCTGCATTGGCGACA
AACTCCTCAAAGAAAGGATGATCCCTGAAGCCCAACGATTGGCGGAGCTC
CGACACATGCGGTTGAGCCCCAAGTCACGCATCAGACTCCCCACTGCCAG
CAGGAGAGACTCGCCTTTGGGCCCTTCCATCTCCCCCTCCACGAGTTCGA
CCTCAAGTGGACTCTTCACCAAGACGGCTCCTTCCGACACCTGGGGGGAA
ACCTCATGCCAACCCCCCACTACGGCCCCGTTCACCCTCGCGACACCTCC
CCCCCCTCCCCGAAAAACAAAACATCTACTCCCAGATGCATTGCTTCACT
CGAACTTTCACGCCTCTCTCGGGTCGCACACTCCCAGAACCCTGCCTCGT
CGCCACTGGTGTCAAGCAAGTTGTACATGCTGCTGCCCCGTACTCCATAC
CTGTGGTTGACGTAGACTACACTGCCTTAGACCGCATGATCTTCCCTGCG
GTCCGCCGACTATTAGGGCTGCACCATGACACAAGCTCCATCTTCCAATG
GACAAAGCTCAAAATCTGGCCATCCCACCTCCTCGCTCAGAAGCGCACTT
TACCCTTTGCGGCCAAATTCACTGACTCATGGTTCTTTCTATGTGCGGTG
AAACGCTTTAGAAGCGACTTTACACACTTTGCTACTTCCTTCCTCCGCCG
CATGATGGACACGTTGAAACTTTTTGACAAGATATAAAATGACCTTCAAG
CCCCAGAGCTTGCAGGGGATGGAGGCACTCTGAAACATGCATGTTAAGTC
GGTAGCTTGAGAGACAGATTTCCTTTCCAGAGTCCGCCTCAAATTGGCCT
CCTACTGCCTCTTAAAACAAACCCACTATCACCGGGTCCTTTTATCCCCA
GTGACTATACCTGGACACACCCGTCTACTGTACATCCGAAAGACTGGTCT
CCACGCAGCCATCGGACTACACTTTAAGCTATTCAGCCACCGCAACCGCA
AAGGAATGTGGAGCGTCCAGCTTGCCTCCGGTGCCACACCCCCAAGGCCG
AATTTGGTGTCCACCTCACCACATGCCTTGCCATCCCTCAGCTGCAAAGC
ACTGACCTTCTCACTTGTCTGGTCCTTATTGATGCAGAAGCCTACCGCCA
AAAGCCCCCACAAAGCCCCCACCCCACAGGCTTCCCAGAACCAGCCCGGG
CAAAGGCCCTAGACTACCGACCTGCAATAAATAAATTTAATTATTACTGA
CCCGATAAGTAGGATTGCCATCCCACGTGATCACATCATCCCCTGGAAAA
TTTACCACTTTAAGTGCGTTCACCAGACGGGAGGTTAGTGAATGATGGCC
CAAGCTTTCTCCCCCCACCCCCCCACAAACCATAGAGGCACAGTCTTCCC
CACTCGACTTGCAAATGGTTATTGGTGACCCGTTAAGACATTTCGATAAA
TTAAGAGGCTTTACCATGGTCAATGTCGAACTCACGAAAGAACCAATCAA
TCAATCAATCAATCAATCATCGCGCGGCATTATTTGACTTTTTGTACACG
CCCTGACGTGCCCACGCCACCTCCCACCGTACCGACAGTACATCGAGGAT
AAAGGTAAGACAAACGTCATGGAAGGCATGCGGCACCGCCACCTTCATAC
AACAAACAACGAGGCAACAGTGCCCGCGATGTCGTCGACATCCTCCTCCT
CCTCCTCCTCCTCCTCATCCTCAGCAGCCGCAGCGGCCAATGAGGAGGAA
GCCGTACGGGCTAAATCCATGGGGGTCCAAGCTTTGCAACGGAGTGAGTA
TGAGCGCGCTGTCCGGCTACTGGGCATCAGCAACCGCCTTTCGCCCAACG
CTGACACCCGAGGTCTCCTCAATTCTGCTTTGGCAGGCCAAGCCCGCATG
GACAGTGGCCGTGCCTCAGCGCACCGTGCCGCTGCTGCGACTGCCCCACC
ATGGTCAGATCAACATTCATTTGGTCGCTTCATGATCAAGGTTGACGCGG
CGATGGACTGGGCGTGGGAGTATTTGCCCACGTCAGCAAAAGGCGCGATC
ACATGCTACATTCATCCATCGAGTCGCAAACCTCTGGCATACATTTCAAT
CCTTATTCTGGGTATGTGCTTGTACAGGTTTGTGTTGCGTGGCCCGCCAT
TGGCATTTGGACGGCTACCGGGTGATATTTATTATAATAGGGGGAATGTG
GTGGTGTCTGCCCCGTTGCTCTCGTGTTTCTTGGCCTCGGTAGCTTTCAG
TCAGGTGGCCCGCCTTTTCCAACGACAGGCCAGACGATGATGCTGGTGGT
GGTGTTGATGGCAACGGATGGAAAGAAGGGAAGAAGAGAGTAAGGGAGAA
ACGACAGGCGGGATGCTATGGGACGTTTTCATATAATAGATGTAAATGAC
TGGAGACGTCAAGAGACTCGACGCTTGAGTGGGGAAGAAGAGTAACATGT
AGAAAATGACGACAGGACCCGTTTGAACAAGTATCAGAACTTGGTTGAAA
AAGTTTC
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protein sequence of NO11G01850.1

>NO11G01850.1-protein ID=NO11G01850.1-protein|Name=NO11G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MEGMRHRHLHTTNNEATVPAMSSTSSSSSSSSSSSAAAAANEEEAVRAKS
MGVQALQRSEYERAVRLLGISNRLSPNADTRGLLNSALAGQARMDSGRAS
AHRAAAATAPPWSDQHSFGRFMIKVDAAMDWAWEYLPTSAKGAITCYIHP
SSRKPLAYISILILGMCLYRFVLRGPPLAFGRLPGDIYYNRGNVVVSAPL
LSCFLASVAFSQVARLFQRQARR*
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Synonyms
Publications