NO11G01850.1, NO11G01850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01850.1
Unique NameNO11G01850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2507
Alignment locationchr11:609732..612238 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:609732..612238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01850.1 vs.
Match: EWM25040.1 (Protein of unknown function DUF2905 [Nannochloropsis gaditana])

HSP 1 Score: 255.0 bits (650), Expect = 2.200e-64
Identity = 145/228 (63.60%), Postives = 172/228 (75.44%), Query Frame = 0 
Query:    4 MRHRHLH----TTNNEATVPAMSSTS------SSSSSSSSSSAAAAANEEEAVRAKSMGVQALQRSEYERAVRLLGISNRLSP-NADTRGLLNSALAGQARMDSGRASAHRAAAATAPPWSDQHSFGRFMIKVDAAMDWAWEYLPTSAKGAITCYIHPSSRKPLAYISILILGMCLYRFVLRGPPLAFGRLPGDIYYNRGNVVVSAPLLSCFLASVAFSQVARLFQRQ 221
            MR R +H    TT+N ++ PA + T+      + +S +S  +A AA NEEEA+RAK++GV AL+R +Y+RA R LGIS+RL P NAD RGLLNSALAGQAR D+ RASAHRAAAATAPPWS QH  GRFM  +DA +D  W  LP++ +  IT Y HPS RKPLAY+SILI+    YRFVLRGPPL  G LPGDIYYN GNVVVSAPL SCFLAS+AFSQVARLFQR+
Sbjct:    1 MRRRQVHGDGVTTDNASSTPASAPTTYEGTWPAPASETSPPAATAAVNEEEALRAKALGVDALRRGDYDRAARFLGISSRLLPENADIRGLLNSALAGQARTDTRRASAHRAAAATAPPWSPQHVSGRFMNGLDAVLDKVWASLPSAGQNLITRYTHPSMRKPLAYVSILIITAATYRFVLRGPPLVLGHLPGDIYYNSGNVVVSAPLFSCFLASMAFSQVARLFQRR 228
The following BLAST results are available for this feature:
BLAST of NO11G01850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25040.12.200e-6463.60Protein of unknown function DUF2905 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01850NO11G01850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01850.1NO11G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01850.1.cds1NO11G01850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01850.1 ID=NO11G01850.1|Name=NO11G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2507bp
ATTCACGTTTTTTCTCCTATTCGTAAGTGATGTTGCCTGCATTGGCGACA
AACTCCTCAAAGAAAGGATGATCCCTGAAGCCCAACGATTGGCGGAGCTC
CGACACATGCGGTTGAGCCCCAAGTCACGCATCAGACTCCCCACTGCCAG
CAGGAGAGACTCGCCTTTGGGCCCTTCCATCTCCCCCTCCACGAGTTCGA
CCTCAAGTGGACTCTTCACCAAGACGGCTCCTTCCGACACCTGGGGGGAA
ACCTCATGCCAACCCCCCACTACGGCCCCGTTCACCCTCGCGACACCTCC
CCCCCCTCCCCGAAAAACAAAACATCTACTCCCAGATGCATTGCTTCACT
CGAACTTTCACGCCTCTCTCGGGTCGCACACTCCCAGAACCCTGCCTCGT
CGCCACTGGTGTCAAGCAAGTTGTACATGCTGCTGCCCCGTACTCCATAC
CTGTGGTTGACGTAGACTACACTGCCTTAGACCGCATGATCTTCCCTGCG
GTCCGCCGACTATTAGGGCTGCACCATGACACAAGCTCCATCTTCCAATG
GACAAAGCTCAAAATCTGGCCATCCCACCTCCTCGCTCAGAAGCGCACTT
TACCCTTTGCGGCCAAATTCACTGACTCATGGTTCTTTCTATGTGCGGTG
AAACGCTTTAGAAGCGACTTTACACACTTTGCTACTTCCTTCCTCCGCCG
CATGATGGACACGTTGAAACTTTTTGACAAGATATAAAATGACCTTCAAG
CCCCAGAGCTTGCAGGGGATGGAGGCACTCTGAAACATGCATGTTAAGTC
GGTAGCTTGAGAGACAGATTTCCTTTCCAGAGTCCGCCTCAAATTGGCCT
CCTACTGCCTCTTAAAACAAACCCACTATCACCGGGTCCTTTTATCCCCA
GTGACTATACCTGGACACACCCGTCTACTGTACATCCGAAAGACTGGTCT
CCACGCAGCCATCGGACTACACTTTAAGCTATTCAGCCACCGCAACCGCA
AAGGAATGTGGAGCGTCCAGCTTGCCTCCGGTGCCACACCCCCAAGGCCG
AATTTGGTGTCCACCTCACCACATGCCTTGCCATCCCTCAGCTGCAAAGC
ACTGACCTTCTCACTTGTCTGGTCCTTATTGATGCAGAAGCCTACCGCCA
AAAGCCCCCACAAAGCCCCCACCCCACAGGCTTCCCAGAACCAGCCCGGG
CAAAGGCCCTAGACTACCGACCTGCAATAAATAAATTTAATTATTACTGA
CCCGATAAGTAGGATTGCCATCCCACGTGATCACATCATCCCCTGGAAAA
TTTACCACTTTAAGTGCGTTCACCAGACGGGAGGTTAGTGAATGATGGCC
CAAGCTTTCTCCCCCCACCCCCCCACAAACCATAGAGGCACAGTCTTCCC
CACTCGACTTGCAAATGGTTATTGGTGACCCGTTAAGACATTTCGATAAA
TTAAGAGGCTTTACCATGGTCAATGTCGAACTCACGAAAGAACCAATCAA
TCAATCAATCAATCAATCATCGCGCGGCATTATTTGACTTTTTGTACACG
CCCTGACGTGCCCACGCCACCTCCCACCGTACCGACAGTACATCGAGGAT
AAAGGTAAGACAAACGTCATGGAAGGCATGCGGCACCGCCACCTTCATAC
AACAAACAACGAGGCAACAGTGCCCGCGATGTCGTCGACATCCTCCTCCT
CCTCCTCCTCCTCCTCATCCTCAGCAGCCGCAGCGGCCAATGAGGAGGAA
GCCGTACGGGCTAAATCCATGGGGGTCCAAGCTTTGCAACGGAGTGAGTA
TGAGCGCGCTGTCCGGCTACTGGGCATCAGCAACCGCCTTTCGCCCAACG
CTGACACCCGAGGTCTCCTCAATTCTGCTTTGGCAGGCCAAGCCCGCATG
GACAGTGGCCGTGCCTCAGCGCACCGTGCCGCTGCTGCGACTGCCCCACC
ATGGTCAGATCAACATTCATTTGGTCGCTTCATGATCAAGGTTGACGCGG
CGATGGACTGGGCGTGGGAGTATTTGCCCACGTCAGCAAAAGGCGCGATC
ACATGCTACATTCATCCATCGAGTCGCAAACCTCTGGCATACATTTCAAT
CCTTATTCTGGGTATGTGCTTGTACAGGTTTGTGTTGCGTGGCCCGCCAT
TGGCATTTGGACGGCTACCGGGTGATATTTATTATAATAGGGGGAATGTG
GTGGTGTCTGCCCCGTTGCTCTCGTGTTTCTTGGCCTCGGTAGCTTTCAG
TCAGGTGGCCCGCCTTTTCCAACGACAGGCCAGACGATGATGCTGGTGGT
GGTGTTGATGGCAACGGATGGAAAGAAGGGAAGAAGAGAGTAAGGGAGAA
ACGACAGGCGGGATGCTATGGGACGTTTTCATATAATAGATGTAAATGAC
TGGAGACGTCAAGAGACTCGACGCTTGAGTGGGGAAGAAGAGTAACATGT
AGAAAATGACGACAGGACCCGTTTGAACAAGTATCAGAACTTGGTTGAAA
AAGTTTC
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protein sequence of NO11G01850.1

>NO11G01850.1-protein ID=NO11G01850.1-protein|Name=NO11G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MEGMRHRHLHTTNNEATVPAMSSTSSSSSSSSSSSAAAAANEEEAVRAKS
MGVQALQRSEYERAVRLLGISNRLSPNADTRGLLNSALAGQARMDSGRAS
AHRAAAATAPPWSDQHSFGRFMIKVDAAMDWAWEYLPTSAKGAITCYIHP
SSRKPLAYISILILGMCLYRFVLRGPPLAFGRLPGDIYYNRGNVVVSAPL
LSCFLASVAFSQVARLFQRQARR*
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mRNA from alignment at chr11:609732..612238-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01850.1 ID=NO11G01850.1|Name=NO11G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2507bp|location=Sequence derived from alignment at chr11:609732..612238- (Nannochloropsis oceanica)
ATTCACGTTTTTTCTCCTATTCGTAAGTGATGTTGCCTGCATTGGCGACA
AACTCCTCAAAGAAAGGATGATCCCTGAAGCCCAACGATTGGCGGAGCTC
CGACACATGCGGTTGAGCCCCAAGTCACGCATCAGACTCCCCACTGCCAG
CAGGAGAGACTCGCCTTTGGGCCCTTCCATCTCCCCCTCCACGAGTTCGA
CCTCAAGTGGACTCTTCACCAAGACGGCTCCTTCCGACACCTGGGGGGAA
ACCTCATGCCAACCCCCCACTACGGCCCCGTTCACCCTCGCGACACCTCC
CCCCCCTCCCCGAAAAACAAAACATCTACTCCCAGATGCATTGCTTCACT
CGAACTTTCACGCCTCTCTCGGGTCGCACACTCCCAGAACCCTGCCTCGT
CGCCACTGGTGTCAAGCAAGTTGTACATGCTGCTGCCCCGTACTCCATAC
CTGTGGTTGACGTAGACTACACTGCCTTAGACCGCATGATCTTCCCTGCG
GTCCGCCGACTATTAGGGCTGCACCATGACACAAGCTCCATCTTCCAATG
GACAAAGCTCAAAATCTGGCCATCCCACCTCCTCGCTCAGAAGCGCACTT
TACCCTTTGCGGCCAAATTCACTGACTCATGGTTCTTTCTATGTGCGGTG
AAACGCTTTAGAAGCGACTTTACACACTTTGCTACTTCCTTCCTCCGCCG
CATGATGGACACGTTGAAACTTTTTGACAAGATATAAAATGACCTTCAAG
CCCCAGAGCTTGCAGGGGATGGAGGCACTCTGAAACATGCATGTTAAGTC
GGTAGCTTGAGAGACAGATTTCCTTTCCAGAGTCCGCCTCAAATTGGCCT
CCTACTGCCTCTTAAAACAAACCCACTATCACCGGGTCCTTTTATCCCCA
GTGACTATACCTGGACACACCCGTCTACTGTACATCCGAAAGACTGGTCT
CCACGCAGCCATCGGACTACACTTTAAGCTATTCAGCCACCGCAACCGCA
AAGGAATGTGGAGCGTCCAGCTTGCCTCCGGTGCCACACCCCCAAGGCCG
AATTTGGTGTCCACCTCACCACATGCCTTGCCATCCCTCAGCTGCAAAGC
ACTGACCTTCTCACTTGTCTGGTCCTTATTGATGCAGAAGCCTACCGCCA
AAAGCCCCCACAAAGCCCCCACCCCACAGGCTTCCCAGAACCAGCCCGGG
CAAAGGCCCTAGACTACCGACCTGCAATAAATAAATTTAATTATTACTGA
CCCGATAAGTAGGATTGCCATCCCACGTGATCACATCATCCCCTGGAAAA
TTTACCACTTTAAGTGCGTTCACCAGACGGGAGGTTAGTGAATGATGGCC
CAAGCTTTCTCCCCCCACCCCCCCACAAACCATAGAGGCACAGTCTTCCC
CACTCGACTTGCAAATGGTTATTGGTGACCCGTTAAGACATTTCGATAAA
TTAAGAGGCTTTACCATGGTCAATGTCGAACTCACGAAAGAACCAATCAA
TCAATCAATCAATCAATCATCGCGCGGCATTATTTGACTTTTTGTACACG
CCCTGACGTGCCCACGCCACCTCCCACCGTACCGACAGTACATCGAGGAT
AAAGGTAAGACAAACGTCATGGAAGGCATGCGGCACCGCCACCTTCATAC
AACAAACAACGAGGCAACAGTGCCCGCGATGTCGTCGACATCCTCCTCCT
CCTCCTCCTCCTCCTCATCCTCAGCAGCCGCAGCGGCCAATGAGGAGGAA
GCCGTACGGGCTAAATCCATGGGGGTCCAAGCTTTGCAACGGAGTGAGTA
TGAGCGCGCTGTCCGGCTACTGGGCATCAGCAACCGCCTTTCGCCCAACG
CTGACACCCGAGGTCTCCTCAATTCTGCTTTGGCAGGCCAAGCCCGCATG
GACAGTGGCCGTGCCTCAGCGCACCGTGCCGCTGCTGCGACTGCCCCACC
ATGGTCAGATCAACATTCATTTGGTCGCTTCATGATCAAGGTTGACGCGG
CGATGGACTGGGCGTGGGAGTATTTGCCCACGTCAGCAAAAGGCGCGATC
ACATGCTACATTCATCCATCGAGTCGCAAACCTCTGGCATACATTTCAAT
CCTTATTCTGGGTATGTGCTTGTACAGGTTTGTGTTGCGTGGCCCGCCAT
TGGCATTTGGACGGCTACCGGGTGATATTTATTATAATAGGGGGAATGTG
GTGGTGTCTGCCCCGTTGCTCTCGTGTTTCTTGGCCTCGGTAGCTTTCAG
TCAGGTGGCCCGCCTTTTCCAACGACAGGCCAGACGATGATGCTGGTGGT
GGTGTTGATGGCAACGGATGGAAAGAAGGGAAGAAGAGAGTAAGGGAGAA
ACGACAGGCGGGATGCTATGGGACGTTTTCATATAATAGATGTAAATGAC
TGGAGACGTCAAGAGACTCGACGCTTGAGTGGGGAAGAAGAGTAACATGT
AGAAAATGACGACAGGACCCGTTTGAACAAGTATCAGAACTTGGTTGAAA
AAGTTTC
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Coding sequence (CDS) from alignment at chr11:609732..612238-

>NO11G01850.1 ID=NO11G01850.1|Name=NO11G01850.1|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at chr11:609732..612238- (Nannochloropsis oceanica)
ATGGAAGGCATGCGGCACCGCCACCTTCATACAACAAACAACGAGGCAAC
AGTGCCCGCGATGTCGTCGACATCCTCCTCCTCCTCCTCCTCCTCCTCAT
CCTCAGCAGCCGCAGCGGCCAATGAGGAGGAAGCCGTACGGGCTAAATCC
ATGGGGGTCCAAGCTTTGCAACGGAGTGAGTATGAGCGCGCTGTCCGGCT
ACTGGGCATCAGCAACCGCCTTTCGCCCAACGCTGACACCCGAGGTCTCC
TCAATTCTGCTTTGGCAGGCCAAGCCCGCATGGACAGTGGCCGTGCCTCA
GCGCACCGTGCCGCTGCTGCGACTGCCCCACCATGGTCAGATCAACATTC
ATTTGGTCGCTTCATGATCAAGGTTGACGCGGCGATGGACTGGGCGTGGG
AGTATTTGCCCACGTCAGCAAAAGGCGCGATCACATGCTACATTCATCCA
TCGAGTCGCAAACCTCTGGCATACATTTCAATCCTTATTCTGGGTATGTG
CTTGTACAGGTTTGTGTTGCGTGGCCCGCCATTGGCATTTGGACGGCTAC
CGGGTGATATTTATTATAATAGGGGGAATGTGGTGGTGTCTGCCCCGTTG
CTCTCGTGTTTCTTGGCCTCGGTAGCTTTCAGTCAGGTGGCCCGCCTTTT
CCAACGACAGGCCAGACGATGA
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Synonyms
Publications