NO11G01710, NO11G01710 (gene) Nannochloropsis oceanica

Overview
NameNO11G01710
Unique NameNO11G01710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2944
Alignment locationchr11:562454..565397 +

Link to JBrowse

Properties
Property NameValue
DescriptionTranscription initiation factor IIA gamma subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:562454..565397 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005672transcription factor TFIIA complex
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR003194TFIIA_gsu
IPR015872TFIIA_gsu_N
Homology
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BLAST of NO11G01710 vs. NCBI_GenBank
Match: EWM25049.1 (Transcription initiation factor IIA gamma subunit [Nannochloropsis gaditana])

HSP 1 Score: 166.8 bits (421), Expect = 6.200e-38
Identity = 94/163 (57.67%), Postives = 119/163 (73.01%), Query Frame = 0 
Query:   11 EAKPQAKMSKTKKPSKEERKLAAALAKLELPTQASEDLAFLYRKTTVAQALAEALEEFSEKQELPEHVVAETMEVFDKAILQATEEARNMGCRVKGRAQLEAYNNVDEHWRFFFKEGASLTIEQNMSL-NQDEGGVGGPLEAPCSVLAVDVAKTVKGGGLVKH 173
            E     ++ +  +  K + + AAALA LE PTQA+EDL+FLYRKT+VAQALAE L+EFSE Q+LPE+VVA+TME FDKAIL A E  RN+  R KG A+L+AYNN++E WRF F++GASL    +MSL  + +G V G +  PCSV AVDVAK VKGG  V+H
Sbjct:   16 EGHHHLELHEQSESMKWKHQHAAALAALEQPTQAAEDLSFLYRKTSVAQALAEGLQEFSETQDLPENVVADTMEAFDKAILTAMETVRNVAGRAKGEAELDAYNNINERWRFVFQDGASLATVSDMSLYAEQDGDVAGCIIGPCSVSAVDVAKVVKGGN-VRH 177
The following BLAST results are available for this feature:
BLAST of NO11G01710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25049.16.200e-3857.67Transcription initiation factor IIA gamma subunit ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002092NSK002092Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01710.1NO11G01710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591259gene_5056Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100049g22gene5454Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01710.1NO11G01710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01710 ID=NO11G01710|Name=NO11G01710|organism=Nannochloropsis oceanica|type=gene|length=2944bp
CGCCGACTGAATCCACAAGATGACCTCCTTCCTTTCCTTGGACCGTACAC
CGTTAGTCTCTGCGTTCTTGAATTGGTAACAACACATGCCACACTACAAC
CACCACTCCAACGACCCTGCACCCCTTTCCACAAAGGGCAAGGGCACGTT
TTTTCAGGCGGTTGCTTTCCATCTGTGTCGGCAACATAGTCTCTGGCGTC
ATCATGAGCGGCCTCCTTTCCCTCGATGAAGACGAAGCCAAGCCCCAGGC
CAAGATGTCCAAGACAAAGAAACCCTCCAAGGAAGAGCGCAAGCTGGCCG
CCGCCTTGGCCAAGCTGGAGCTACCTACACAAGCGAGCGAGGATCTGGCG
TTTCTCTATAGAAAGACAACTGTGGCCCAAGCATTAGCGGAGGCATTGGA
AGAGTTTTCGGAGAAACAGGAGCTGCCCGAGCACGTGGTGGCCGAAACGA
TGGAGGTATTTGACAAGgtataaggataaggatatggaaagagttgtggt
tctggtggcatttgaatgtgggagtcaaggaagggacaaaagagggagag
atgagcagatgctggtccttgttggcggtgttgttgatgattgtggctgt
gctcggtgggcttgatttcatgtaagaataaagtataagaagtataaaga
taattcaatgcaacaatatgtcgtggatctcacgtaggctttcatacgat
ccctttctccatcgtttagGCTATCCTGCAAGCCACGGAGGAAGCGCGGA
ATATGGGATGTCGGGTCAAGGGAAGGgtgagtttataaagatgcgacaag
gagaaggttgacgtgtctatgccttataagagactcgtatagactcctcc
ctagttattgactcgcgaagtcccagcctcagtggttgagtggtgcttgt
gacttttcctcctcgcacattgtatatatcattttcagcccatgctcaca
tccacgcaccgtttctccatcctccctctcttctctccgggccactttca
gGCGCAACTCGAGGCCTACAACAATGTCGACGAACACTGGCGTTTCTTTT
TCAAAGAGGGCGCCTCTTTGACGATCGAGCAGAATATGTCTCTGAATCAG
GACGAGGGAGGGGTGGGCGGCCCGCTGGAGGCACCCTGTAGCGTGTTAGC
TGTGGACGTGGCCAAAACTGTCAAAGGTGGAGGGCTTGTGAAACATCGAG
GTTTCAGATAACGGGATAATGCGAGAGGAAGGGAGGAAGAAGAGGGTTTG
TAAAGGGAATGTGTTATATAGCATATCGTGTACATGGCCAAGATGCCGTG
TCAATAGCCACCACACATCAATTAAAACCAAAATTTATGAATTCATCACG
CCAAACATTCGACACCGAGGCCCCACAGTTTCACTCGGGAATAATCAAGA
AACTCCATCAGTGACCACTCACACACACACACGACATGGTATGAGGTTGT
AAGGCATGCAGGTATGAAGTGAGGTTGTAAGGCATTCAAGCATGAAGAGT
TTGTGGGAGCACCACCAACAACAATCGAATAGTATCTTATCTCCTCCTTT
CTTTTCTTGTCGCTTTCTGTTTTTACTTTTGTTTCTGTGACATTCCTCTA
TAATAGCCTTCACGCTCGTGTGCTTCATGCACCAGCCTGTTCAAAGATGC
GTTTAGTCCAACTTACACTTAAGATGCATCCCTTTAACTTAGACTATAAC
TCCTCTAAGAGCTTTGCTAGCTTCCTCCCCCTCCTCGATATCTTCAAAGT
ACATACATGACAAGTTTGAGGTAACCCCCCCTTGACAGTGAGAGAGTGCC
TCCTTATCACTCAAGAAAAAATCACGGAGATTGATGTACCGTTCACATTC
GCCTAACATAACCCGGGCCATCTCAAGTCACGTCATGTGCATGTTACCCC
CAGCGAATTGAGGGACACCAAAATCCCTTCGCGCGCTCGCCCGCATGCCC
GTCCAAAGCGAATTTTGACCTCAGCATCACGCCTATACAAGTTTCCGTCC
CACTCATTCCTCTACATCCTATCCCTCTTCTTCCACCCCATCCTTCCCCA
CCTCCACCGACCAACGTCGTCGCCGCCTATGAAAAGTATCTCCCGCGAAC
CTCTCAAGAATCCGACAATTAATAACCGCAGGACAATCTAATTCATACAA
CCGCCAAACCCCCCCTCCTCCTTCCTCCTTTCCTGTCCCCCCCTCCTCCC
TTCCCACGTCCAATAAACGAAACGTTGGGTACACACGTAGATACCGAAAG
AGCTGCCCAAGGCCCACACTCTTCTCCCGCAATAAATGCGCACATTCCGG
CGTCTTTGGACTCAGGCTACTTGTGGCCGTGCAGAACACACGACCCATCA
CAGACAAGTCCACTTCACGATCGAAAAGCCCTGGTTCAATTTCCTTGCAG
CGTTTGATGCTCACACTCACAGCAGCGTTGTAATACGAACTAATTATTCG
CTGCAAATCCCCTTCGGCGGAGAGGGCCACGCGTTCGAGCGGACTGAATG
TCTCAGGCAACCGGATCTCGACGTCTTTAAATCCGACGCGTTCCATGATT
TGGGCGGGAATTCCAGCAGGAAACGAGGTGCTCGAAGACGATAATGCTGG
TGGTCTTGGGTTGGTGGTCTTCTCCAAGTCGCTTTCTGTCATGAGAAATG
GAGGGGCGGTATCGGCCTCGGGAGGAGTGGTGGAGCAGAGGTGGAGAGAC
CCACCGGCAGGGCGCACACAGGAAAAGGACAAGGATTTCACGAACACGCA
GGTGTGCTGCCTTATCCTTTTATCCTGGACTGGTCGAGAGGTAGAGGCCA
TCGCAGTCATCATCGTCGTCACGGCCTCATGCTGACGAAGAAGCAGTCCG
ATGCAGAACGCAAGGAGGAGCGCAGGTCTCCTCCTCATGACCTTGGTGGG
ACACAGCAGTGGCCCCAGCAGGTTCTCGTGTTTGTAGTCTCTGT
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protein sequence of NO11G01710.1

>NO11G01710.1-protein ID=NO11G01710.1-protein|Name=NO11G01710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MSGLLSLDEDEAKPQAKMSKTKKPSKEERKLAAALAKLELPTQASEDLAF
LYRKTTVAQALAEALEEFSEKQELPEHVVAETMEVFDKAILQATEEARNM
GCRVKGRAQLEAYNNVDEHWRFFFKEGASLTIEQNMSLNQDEGGVGGPLE
APCSVLAVDVAKTVKGGGLVKHRGFR*
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Synonyms
Publications