NO11G01710.1, NO11G01710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01710.1
Unique NameNO11G01710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2467
Alignment locationchr11:562454..565397 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:562454..565397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01710.1 vs.
Match: EWM25049.1 (Transcription initiation factor IIA gamma subunit [Nannochloropsis gaditana])

HSP 1 Score: 166.8 bits (421), Expect = 6.200e-38
Identity = 94/163 (57.67%), Postives = 119/163 (73.01%), Query Frame = 0 
Query:   11 EAKPQAKMSKTKKPSKEERKLAAALAKLELPTQASEDLAFLYRKTTVAQALAEALEEFSEKQELPEHVVAETMEVFDKAILQATEEARNMGCRVKGRAQLEAYNNVDEHWRFFFKEGASLTIEQNMSL-NQDEGGVGGPLEAPCSVLAVDVAKTVKGGGLVKH 173
            E     ++ +  +  K + + AAALA LE PTQA+EDL+FLYRKT+VAQALAE L+EFSE Q+LPE+VVA+TME FDKAIL A E  RN+  R KG A+L+AYNN++E WRF F++GASL    +MSL  + +G V G +  PCSV AVDVAK VKGG  V+H
Sbjct:   16 EGHHHLELHEQSESMKWKHQHAAALAALEQPTQAAEDLSFLYRKTSVAQALAEGLQEFSETQDLPENVVADTMEAFDKAILTAMETVRNVAGRAKGEAELDAYNNINERWRFVFQDGASLATVSDMSLYAEQDGDVAGCIIGPCSVSAVDVAKVVKGGN-VRH 177
The following BLAST results are available for this feature:
BLAST of NO11G01710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25049.16.200e-3857.67Transcription initiation factor IIA gamma subunit ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01710NO11G01710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01710.1NO11G01710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01710.1.cds1NO11G01710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01710.1.cds2NO11G01710.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01710.1.cds3NO11G01710.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01710.1 ID=NO11G01710.1|Name=NO11G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2467bp
CGCCGACTGAATCCACAAGATGACCTCCTTCCTTTCCTTGGACCGTACAC
CGTTAGTCTCTGCGTTCTTGAATTGGTAACAACACATGCCACACTACAAC
CACCACTCCAACGACCCTGCACCCCTTTCCACAAAGGGCAAGGGCACGTT
TTTTCAGGCGGTTGCTTTCCATCTGTGTCGGCAACATAGTCTCTGGCGTC
ATCATGAGCGGCCTCCTTTCCCTCGATGAAGACGAAGCCAAGCCCCAGGC
CAAGATGTCCAAGACAAAGAAACCCTCCAAGGAAGAGCGCAAGCTGGCCG
CCGCCTTGGCCAAGCTGGAGCTACCTACACAAGCGAGCGAGGATCTGGCG
TTTCTCTATAGAAAGACAACTGTGGCCCAAGCATTAGCGGAGGCATTGGA
AGAGTTTTCGGAGAAACAGGAGCTGCCCGAGCACGTGGTGGCCGAAACGA
TGGAGGTATTTGACAAGGCTATCCTGCAAGCCACGGAGGAAGCGCGGAAT
ATGGGATGTCGGGTCAAGGGAAGGGCGCAACTCGAGGCCTACAACAATGT
CGACGAACACTGGCGTTTCTTTTTCAAAGAGGGCGCCTCTTTGACGATCG
AGCAGAATATGTCTCTGAATCAGGACGAGGGAGGGGTGGGCGGCCCGCTG
GAGGCACCCTGTAGCGTGTTAGCTGTGGACGTGGCCAAAACTGTCAAAGG
TGGAGGGCTTGTGAAACATCGAGGTTTCAGATAACGGGATAATGCGAGAG
GAAGGGAGGAAGAAGAGGGTTTGTAAAGGGAATGTGTTATATAGCATATC
GTGTACATGGCCAAGATGCCGTGTCAATAGCCACCACACATCAATTAAAA
CCAAAATTTATGAATTCATCACGCCAAACATTCGACACCGAGGCCCCACA
GTTTCACTCGGGAATAATCAAGAAACTCCATCAGTGACCACTCACACACA
CACACGACATGGTATGAGGTTGTAAGGCATGCAGGTATGAAGTGAGGTTG
TAAGGCATTCAAGCATGAAGAGTTTGTGGGAGCACCACCAACAACAATCG
AATAGTATCTTATCTCCTCCTTTCTTTTCTTGTCGCTTTCTGTTTTTACT
TTTGTTTCTGTGACATTCCTCTATAATAGCCTTCACGCTCGTGTGCTTCA
TGCACCAGCCTGTTCAAAGATGCGTTTAGTCCAACTTACACTTAAGATGC
ATCCCTTTAACTTAGACTATAACTCCTCTAAGAGCTTTGCTAGCTTCCTC
CCCCTCCTCGATATCTTCAAAGTACATACATGACAAGTTTGAGGTAACCC
CCCCTTGACAGTGAGAGAGTGCCTCCTTATCACTCAAGAAAAAATCACGG
AGATTGATGTACCGTTCACATTCGCCTAACATAACCCGGGCCATCTCAAG
TCACGTCATGTGCATGTTACCCCCAGCGAATTGAGGGACACCAAAATCCC
TTCGCGCGCTCGCCCGCATGCCCGTCCAAAGCGAATTTTGACCTCAGCAT
CACGCCTATACAAGTTTCCGTCCCACTCATTCCTCTACATCCTATCCCTC
TTCTTCCACCCCATCCTTCCCCACCTCCACCGACCAACGTCGTCGCCGCC
TATGAAAAGTATCTCCCGCGAACCTCTCAAGAATCCGACAATTAATAACC
GCAGGACAATCTAATTCATACAACCGCCAAACCCCCCCTCCTCCTTCCTC
CTTTCCTGTCCCCCCCTCCTCCCTTCCCACGTCCAATAAACGAAACGTTG
GGTACACACGTAGATACCGAAAGAGCTGCCCAAGGCCCACACTCTTCTCC
CGCAATAAATGCGCACATTCCGGCGTCTTTGGACTCAGGCTACTTGTGGC
CGTGCAGAACACACGACCCATCACAGACAAGTCCACTTCACGATCGAAAA
GCCCTGGTTCAATTTCCTTGCAGCGTTTGATGCTCACACTCACAGCAGCG
TTGTAATACGAACTAATTATTCGCTGCAAATCCCCTTCGGCGGAGAGGGC
CACGCGTTCGAGCGGACTGAATGTCTCAGGCAACCGGATCTCGACGTCTT
TAAATCCGACGCGTTCCATGATTTGGGCGGGAATTCCAGCAGGAAACGAG
GTGCTCGAAGACGATAATGCTGGTGGTCTTGGGTTGGTGGTCTTCTCCAA
GTCGCTTTCTGTCATGAGAAATGGAGGGGCGGTATCGGCCTCGGGAGGAG
TGGTGGAGCAGAGGTGGAGAGACCCACCGGCAGGGCGCACACAGGAAAAG
GACAAGGATTTCACGAACACGCAGGTGTGCTGCCTTATCCTTTTATCCTG
GACTGGTCGAGAGGTAGAGGCCATCGCAGTCATCATCGTCGTCACGGCCT
CATGCTGACGAAGAAGCAGTCCGATGCAGAACGCAAGGAGGAGCGCAGGT
CTCCTCCTCATGACCTTGGTGGGACACAGCAGTGGCCCCAGCAGGTTCTC
GTGTTTGTAGTCTCTGT
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protein sequence of NO11G01710.1

>NO11G01710.1-protein ID=NO11G01710.1-protein|Name=NO11G01710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MSGLLSLDEDEAKPQAKMSKTKKPSKEERKLAAALAKLELPTQASEDLAF
LYRKTTVAQALAEALEEFSEKQELPEHVVAETMEVFDKAILQATEEARNM
GCRVKGRAQLEAYNNVDEHWRFFFKEGASLTIEQNMSLNQDEGGVGGPLE
APCSVLAVDVAKTVKGGGLVKHRGFR*
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mRNA from alignment at chr11:562454..565397+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01710.1 ID=NO11G01710.1|Name=NO11G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2944bp|location=Sequence derived from alignment at chr11:562454..565397+ (Nannochloropsis oceanica)
CGCCGACTGAATCCACAAGATGACCTCCTTCCTTTCCTTGGACCGTACAC
CGTTAGTCTCTGCGTTCTTGAATTGGTAACAACACATGCCACACTACAAC
CACCACTCCAACGACCCTGCACCCCTTTCCACAAAGGGCAAGGGCACGTT
TTTTCAGGCGGTTGCTTTCCATCTGTGTCGGCAACATAGTCTCTGGCGTC
ATCATGAGCGGCCTCCTTTCCCTCGATGAAGACGAAGCCAAGCCCCAGGC
CAAGATGTCCAAGACAAAGAAACCCTCCAAGGAAGAGCGCAAGCTGGCCG
CCGCCTTGGCCAAGCTGGAGCTACCTACACAAGCGAGCGAGGATCTGGCG
TTTCTCTATAGAAAGACAACTGTGGCCCAAGCATTAGCGGAGGCATTGGA
AGAGTTTTCGGAGAAACAGGAGCTGCCCGAGCACGTGGTGGCCGAAACGA
TGGAGGTATTTGACAAGGTATAAGGATAAGGATATGGAAAGAGTTGTGGT
TCTGGTGGCATTTGAATGTGGGAGTCAAGGAAGGGACAAAAGAGGGAGAG
ATGAGCAGATGCTGGTCCTTGTTGGCGGTGTTGTTGATGATTGTGGCTGT
GCTCGGTGGGCTTGATTTCATGTAAGAATAAAGTATAAGAAGTATAAAGA
TAATTCAATGCAACAATATGTCGTGGATCTCACGTAGGCTTTCATACGAT
CCCTTTCTCCATCGTTTAGGCTATCCTGCAAGCCACGGAGGAAGCGCGGA
ATATGGGATGTCGGGTCAAGGGAAGGGTGAGTTTATAAAGATGCGACAAG
GAGAAGGTTGACGTGTCTATGCCTTATAAGAGACTCGTATAGACTCCTCC
CTAGTTATTGACTCGCGAAGTCCCAGCCTCAGTGGTTGAGTGGTGCTTGT
GACTTTTCCTCCTCGCACATTGTATATATCATTTTCAGCCCATGCTCACA
TCCACGCACCGTTTCTCCATCCTCCCTCTCTTCTCTCCGGGCCACTTTCA
GGCGCAACTCGAGGCCTACAACAATGTCGACGAACACTGGCGTTTCTTTT
TCAAAGAGGGCGCCTCTTTGACGATCGAGCAGAATATGTCTCTGAATCAG
GACGAGGGAGGGGTGGGCGGCCCGCTGGAGGCACCCTGTAGCGTGTTAGC
TGTGGACGTGGCCAAAACTGTCAAAGGTGGAGGGCTTGTGAAACATCGAG
GTTTCAGATAACGGGATAATGCGAGAGGAAGGGAGGAAGAAGAGGGTTTG
TAAAGGGAATGTGTTATATAGCATATCGTGTACATGGCCAAGATGCCGTG
TCAATAGCCACCACACATCAATTAAAACCAAAATTTATGAATTCATCACG
CCAAACATTCGACACCGAGGCCCCACAGTTTCACTCGGGAATAATCAAGA
AACTCCATCAGTGACCACTCACACACACACACGACATGGTATGAGGTTGT
AAGGCATGCAGGTATGAAGTGAGGTTGTAAGGCATTCAAGCATGAAGAGT
TTGTGGGAGCACCACCAACAACAATCGAATAGTATCTTATCTCCTCCTTT
CTTTTCTTGTCGCTTTCTGTTTTTACTTTTGTTTCTGTGACATTCCTCTA
TAATAGCCTTCACGCTCGTGTGCTTCATGCACCAGCCTGTTCAAAGATGC
GTTTAGTCCAACTTACACTTAAGATGCATCCCTTTAACTTAGACTATAAC
TCCTCTAAGAGCTTTGCTAGCTTCCTCCCCCTCCTCGATATCTTCAAAGT
ACATACATGACAAGTTTGAGGTAACCCCCCCTTGACAGTGAGAGAGTGCC
TCCTTATCACTCAAGAAAAAATCACGGAGATTGATGTACCGTTCACATTC
GCCTAACATAACCCGGGCCATCTCAAGTCACGTCATGTGCATGTTACCCC
CAGCGAATTGAGGGACACCAAAATCCCTTCGCGCGCTCGCCCGCATGCCC
GTCCAAAGCGAATTTTGACCTCAGCATCACGCCTATACAAGTTTCCGTCC
CACTCATTCCTCTACATCCTATCCCTCTTCTTCCACCCCATCCTTCCCCA
CCTCCACCGACCAACGTCGTCGCCGCCTATGAAAAGTATCTCCCGCGAAC
CTCTCAAGAATCCGACAATTAATAACCGCAGGACAATCTAATTCATACAA
CCGCCAAACCCCCCCTCCTCCTTCCTCCTTTCCTGTCCCCCCCTCCTCCC
TTCCCACGTCCAATAAACGAAACGTTGGGTACACACGTAGATACCGAAAG
AGCTGCCCAAGGCCCACACTCTTCTCCCGCAATAAATGCGCACATTCCGG
CGTCTTTGGACTCAGGCTACTTGTGGCCGTGCAGAACACACGACCCATCA
CAGACAAGTCCACTTCACGATCGAAAAGCCCTGGTTCAATTTCCTTGCAG
CGTTTGATGCTCACACTCACAGCAGCGTTGTAATACGAACTAATTATTCG
CTGCAAATCCCCTTCGGCGGAGAGGGCCACGCGTTCGAGCGGACTGAATG
TCTCAGGCAACCGGATCTCGACGTCTTTAAATCCGACGCGTTCCATGATT
TGGGCGGGAATTCCAGCAGGAAACGAGGTGCTCGAAGACGATAATGCTGG
TGGTCTTGGGTTGGTGGTCTTCTCCAAGTCGCTTTCTGTCATGAGAAATG
GAGGGGCGGTATCGGCCTCGGGAGGAGTGGTGGAGCAGAGGTGGAGAGAC
CCACCGGCAGGGCGCACACAGGAAAAGGACAAGGATTTCACGAACACGCA
GGTGTGCTGCCTTATCCTTTTATCCTGGACTGGTCGAGAGGTAGAGGCCA
TCGCAGTCATCATCGTCGTCACGGCCTCATGCTGACGAAGAAGCAGTCCG
ATGCAGAACGCAAGGAGGAGCGCAGGTCTCCTCCTCATGACCTTGGTGGG
ACACAGCAGTGGCCCCAGCAGGTTCTCGTGTTTGTAGTCTCTGT
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Coding sequence (CDS) from alignment at chr11:562454..565397+

>NO11G01710.1 ID=NO11G01710.1|Name=NO11G01710.1|organism=Nannochloropsis oceanica|type=CDS|length=531bp|location=Sequence derived from alignment at chr11:562454..565397+ (Nannochloropsis oceanica)
ATGAGCGGCCTCCTTTCCCTCGATGAAGACGAAGCCAAGCCCCAGGCCAA
GATGTCCAAGACAAAGAAACCCTCCAAGGAAGAGCGCAAGCTGGCCGCCG
CCTTGGCCAAGCTGGAGCTACCTACACAAGCGAGCGAGGATCTGGCGTTT
CTCTATAGAAAGACAACTGTGGCCCAAGCATTAGCGGAGGCATTGGAAGA
GTTTTCGGAGAAACAGGAGCTGCCCGAGCACGTGGTGGCCGAAACGATGG
AGGTATTTGACAAGGCTATCCTGCAAGCCACGGAGGAAGCGCGGAATATG
GGATGTCGGGTCAAGGGAAGGGCGCAACTCGAGGCCTACAACAATGTCGA
CGAACACTGGCGTTTCTTTTTCAAAGAGGGCGCCTCTTTGACGATCGAGC
AGAATATGTCTCTGAATCAGGACGAGGGAGGGGTGGGCGGCCCGCTGGAG
GCACCCTGTAGCGTGTTAGCTGTGGACGTGGCCAAAACTGTCAAAGGTGG
AGGGCTTGTGAAACATCGAGGTTTCAGATAA
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Synonyms
Publications