NO11G01520, NO11G01520 (gene) Nannochloropsis oceanica

Overview
NameNO11G01520
Unique NameNO11G01520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length495
Alignment locationchr11:509201..509695 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:509201..509695 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00515372 iron, 2 sulfur cluster binding
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR036922Rieske_2Fe-2S_sf
Homology
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BLAST of NO11G01520 vs. NCBI_GenBank
Match: EWM25083.1 (hypothetical protein Naga_100098g20 [Nannochloropsis gaditana])

HSP 1 Score: 143.3 bits (360), Expect = 6.800e-31
Identity = 78/148 (52.70%), Postives = 92/148 (62.16%), Query Frame = 0 
Query:   23 PKLLLLLLLELVVIARAFMPCPILLANVPHASACMALQA--TPFYRLTRHALTQSDRA-----TITISIADGRTFVLQDTCPPTNHSLLHAEVDPAILSVQDPVFGTRFDLRTGRLRGAWCPNSWWVRRLFKPADLVLLSSSAILAGE 164
            P LLLL    + +   AF+    +L   P   A     A   P YR+ R A    + +     TIT+S+ADGR F  QD CPPTNHSLLHAE+DP ILS++DPVFGTRFD+RTG LRG WCP  WW R LF+PA LVLLSSS  L  E
Sbjct:   15 PVLLLLHANNISLSHAAFVRRFSILNASPRVMAVAPRHAASVPSYRVIRRAPMHRNESLARDVTITVSLADGRNFTFQDACPPTNHSLLHAEIDPEILSIRDPVFGTRFDMRTGNLRGMWCPQRWWARNLFEPAGLVLLSSSTTLKAE 162
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BLAST of NO11G01520 vs. NCBI_GenBank
Match: XP_005855709.1 (hypothetical protein NGA_2060500, partial [Nannochloropsis gaditana CCMP526] >EKU20652.1 hypothetical protein NGA_2060500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 137.5 bits (345), Expect = 3.700e-29
Identity = 74/140 (52.86%), Postives = 89/140 (63.57%), Query Frame = 0 
Query:   23 PKLLLLLLLELVVIARAFMPCPILLANVPHASACMALQA--TPFYRLTRHALTQSDRA-----TITISIADGRTFVLQDTCPPTNHSLLHAEVDPAILSVQDPVFGTRFDLRTGRLRGAWCPNSWWVRRLFKPADLVLLS 156
            P LLLL +  + +   AF+    +L   P   A     A   P YR+ R A    + +     TIT+S+ADGR F  QD CPPTNHSLLHAE+DP ILS++DPVFGTRFD+RTG LRG WCP  WW R LF+PA LVLLS
Sbjct:   15 PVLLLLHVNNISLSHAAFVRRFSILNASPRVMAVAPRHAASVPSYRVIRRAPMHRNESLARDVTITVSLADGRNFTFQDACPPTNHSLLHAEIDPEILSIRDPVFGTRFDMRTGNLRGMWCPQRWWARNLFEPAGLVLLS 154
The following BLAST results are available for this feature:
BLAST of NO11G01520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM25083.16.800e-3152.70hypothetical protein Naga_100098g20 [Nannochlorops... [more]
XP_005855709.13.700e-2952.86hypothetical protein NGA_2060500, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL116nonsL116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR019ngnoR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002113NSK002113Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01520.1NO11G01520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591193gene_5035Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100098g20gene5435Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01520.1NO11G01520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01520 ID=NO11G01520|Name=NO11G01520|organism=Nannochloropsis oceanica|type=gene|length=495bp
ATGTCTGACGCTGCGCTGCCAAATGTTGGACCTCTAATGGCAGCAGCTAG
ACTTCAGCGCTGCATCCCAAAGCTGCTCCTGCTCCTACTCCTCGAGCTGG
TGGTTATTGCAAGGGCATTTATGCCATGTCCTATCCTGCTTGCAAATGTT
CCCCACGCCTCTGCCTGCATGGCTCTCCAGGCCACTCCCTTCTACCGTTT
GACGAGGCACGCTCTCACTCAAAGCGATCGGGCCACAATCACCATCAGCA
TCGCAGATGGTCGCACCTTCGTGCTACAAGATACCTGCCCACCCACTAAC
CACTCCTTGTTACACGCGGAAGTGGATCCGGCAATTTTGTCAGTGCAGGA
CCCTGTCTTCGGTACTCGTTTTGACCTACGAACGGGCCGTCTACGTGGGG
CATGGTGCCCGAACTCCTGGTGGGTCCGGCGGCTGTTCAAGCCGGCGGAC
CTCGTGCTACTATCGTCATCAGCGATATTGGCGGGGGAGAAGTAG
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protein sequence of NO11G01520.1

>NO11G01520.1-protein ID=NO11G01520.1-protein|Name=NO11G01520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MSDAALPNVGPLMAAARLQRCIPKLLLLLLLELVVIARAFMPCPILLANV
PHASACMALQATPFYRLTRHALTQSDRATITISIADGRTFVLQDTCPPTN
HSLLHAEVDPAILSVQDPVFGTRFDLRTGRLRGAWCPNSWWVRRLFKPAD
LVLLSSSAILAGEK*
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Synonyms
Publications