NO11G01520.1, NO11G01520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01520.1
Unique NameNO11G01520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length495
Alignment locationchr11:509201..509695 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:509201..509695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01520.1 vs.
Match: EWM25083.1 (hypothetical protein Naga_100098g20 [Nannochloropsis gaditana])

HSP 1 Score: 143.3 bits (360), Expect = 6.800e-31
Identity = 78/148 (52.70%), Postives = 92/148 (62.16%), Query Frame = 0 
Query:   23 PKLLLLLLLELVVIARAFMPCPILLANVPHASACMALQAT--PFYRLTRHALTQSDRA-----TITISIADGRTFVLQDTCPPTNHSLLHAEVDPAILSVQDPVFGTRFDLRTGRLRGAWCPNSWWVRRLFKPADLVLLSSSAILAGE 164
            P LLLL    + +   AF+    +L   P   A     A   P YR+ R A    + +     TIT+S+ADGR F  QD CPPTNHSLLHAE+DP ILS++DPVFGTRFD+RTG LRG WCP  WW R LF+PA LVLLSSS  L  E
Sbjct:   15 PVLLLLHANNISLSHAAFVRRFSILNASPRVMAVAPRHAASVPSYRVIRRAPMHRNESLARDVTITVSLADGRNFTFQDACPPTNHSLLHAEIDPEILSIRDPVFGTRFDMRTGNLRGMWCPQRWWARNLFEPAGLVLLSSSTTLKAE 162
The following BLAST results are available for this feature:
BLAST of NO11G01520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25083.16.800e-3152.70hypothetical protein Naga_100098g20 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01520NO11G01520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01520.1NO11G01520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01520.1.cds1NO11G01520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01520.1 ID=NO11G01520.1|Name=NO11G01520.1|organism=Nannochloropsis oceanica|type=mRNA|length=495bp
ATGTCTGACGCTGCGCTGCCAAATGTTGGACCTCTAATGGCAGCAGCTAG
ACTTCAGCGCTGCATCCCAAAGCTGCTCCTGCTCCTACTCCTCGAGCTGG
TGGTTATTGCAAGGGCATTTATGCCATGTCCTATCCTGCTTGCAAATGTT
CCCCACGCCTCTGCCTGCATGGCTCTCCAGGCCACTCCCTTCTACCGTTT
GACGAGGCACGCTCTCACTCAAAGCGATCGGGCCACAATCACCATCAGCA
TCGCAGATGGTCGCACCTTCGTGCTACAAGATACCTGCCCACCCACTAAC
CACTCCTTGTTACACGCGGAAGTGGATCCGGCAATTTTGTCAGTGCAGGA
CCCTGTCTTCGGTACTCGTTTTGACCTACGAACGGGCCGTCTACGTGGGG
CATGGTGCCCGAACTCCTGGTGGGTCCGGCGGCTGTTCAAGCCGGCGGAC
CTCGTGCTACTATCGTCATCAGCGATATTGGCGGGGGAGAAGTAG
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protein sequence of NO11G01520.1

>NO11G01520.1-protein ID=NO11G01520.1-protein|Name=NO11G01520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MSDAALPNVGPLMAAARLQRCIPKLLLLLLLELVVIARAFMPCPILLANV
PHASACMALQATPFYRLTRHALTQSDRATITISIADGRTFVLQDTCPPTN
HSLLHAEVDPAILSVQDPVFGTRFDLRTGRLRGAWCPNSWWVRRLFKPAD
LVLLSSSAILAGEK*
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mRNA from alignment at chr11:509201..509695+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01520.1 ID=NO11G01520.1|Name=NO11G01520.1|organism=Nannochloropsis oceanica|type=mRNA|length=495bp|location=Sequence derived from alignment at chr11:509201..509695+ (Nannochloropsis oceanica)
ATGTCTGACGCTGCGCTGCCAAATGTTGGACCTCTAATGGCAGCAGCTAG
ACTTCAGCGCTGCATCCCAAAGCTGCTCCTGCTCCTACTCCTCGAGCTGG
TGGTTATTGCAAGGGCATTTATGCCATGTCCTATCCTGCTTGCAAATGTT
CCCCACGCCTCTGCCTGCATGGCTCTCCAGGCCACTCCCTTCTACCGTTT
GACGAGGCACGCTCTCACTCAAAGCGATCGGGCCACAATCACCATCAGCA
TCGCAGATGGTCGCACCTTCGTGCTACAAGATACCTGCCCACCCACTAAC
CACTCCTTGTTACACGCGGAAGTGGATCCGGCAATTTTGTCAGTGCAGGA
CCCTGTCTTCGGTACTCGTTTTGACCTACGAACGGGCCGTCTACGTGGGG
CATGGTGCCCGAACTCCTGGTGGGTCCGGCGGCTGTTCAAGCCGGCGGAC
CTCGTGCTACTATCGTCATCAGCGATATTGGCGGGGGAGAAGTAG
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Coding sequence (CDS) from alignment at chr11:509201..509695+

>NO11G01520.1 ID=NO11G01520.1|Name=NO11G01520.1|organism=Nannochloropsis oceanica|type=CDS|length=495bp|location=Sequence derived from alignment at chr11:509201..509695+ (Nannochloropsis oceanica)
ATGTCTGACGCTGCGCTGCCAAATGTTGGACCTCTAATGGCAGCAGCTAG
ACTTCAGCGCTGCATCCCAAAGCTGCTCCTGCTCCTACTCCTCGAGCTGG
TGGTTATTGCAAGGGCATTTATGCCATGTCCTATCCTGCTTGCAAATGTT
CCCCACGCCTCTGCCTGCATGGCTCTCCAGGCCACTCCCTTCTACCGTTT
GACGAGGCACGCTCTCACTCAAAGCGATCGGGCCACAATCACCATCAGCA
TCGCAGATGGTCGCACCTTCGTGCTACAAGATACCTGCCCACCCACTAAC
CACTCCTTGTTACACGCGGAAGTGGATCCGGCAATTTTGTCAGTGCAGGA
CCCTGTCTTCGGTACTCGTTTTGACCTACGAACGGGCCGTCTACGTGGGG
CATGGTGCCCGAACTCCTGGTGGGTCCGGCGGCTGTTCAAGCCGGCGGAC
CTCGTGCTACTATCGTCATCAGCGATATTGGCGGGGGAGAAGTAG
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Synonyms
Publications