NO11G01290, NO11G01290 (gene) Nannochloropsis oceanica

Overview
NameNO11G01290
Unique NameNO11G01290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1621
Alignment locationchr11:449941..451561 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:449941..451561 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0000818nuclear MIS12/MIND complex
Homology
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BLAST of NO11G01290 vs. NCBI_GenBank
Match: EWM25115.1 (hypothetical protein Naga_100016g7 [Nannochloropsis gaditana])

HSP 1 Score: 167.9 bits (424), Expect = 3.500e-38
Identity = 92/171 (53.80%), Postives = 104/171 (60.82%), Query Frame = 0 
Query:   11 TASMKHLRTLFVDKYLENTVKHLCTKDVPETFGGLKDQLDGPLFNILMTLVKEKMQGLGPFAQNEFEEMCAEMGLEDKFRQVETQEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGQVGEEDSSDRLG-GMTPEGLARHRRMVIKRKELTELQGMHEK 181
            TA MKHLRTLFVDKYLE++ KHLCT D+PE F  LK QLDGP FNILMT+VKEKMQ LGPFAQ EF+E+C E+GLEDKFRQVE Q                                         P  Q G E+ +D +   M PE  ARHRRMVIKRKEL EL+GM E+
Sbjct:   10 TARMKHLRTLFVDKYLESSTKHLCTTDIPEAFADLKSQLDGPSFNILMTMVKEKMQALGPFAQKEFQELCTELGLEDKFRQVEAQ----------ISEAATHREAASRTKGRRNARTGKEGMKSTDPQEQFGNENCNDSVADDMPPEDSARHRRMVIKRKELAELRGMQER 170
The following BLAST results are available for this feature:
BLAST of NO11G01290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25115.13.500e-3853.80hypothetical protein Naga_100016g7 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL116nonsL116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR019ngnoR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002140NSK002140Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01290.1NO11G01290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO11G01290.2NO11G01290.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591090gene_5010Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100016g7gene5409Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01290.1NO11G01290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO11G01290.2NO11G01290.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01290 ID=NO11G01290|Name=NO11G01290|organism=Nannochloropsis oceanica|type=gene|length=1621bp
AGCCCGCTCTCTCCGCCCTCAACAGCCACCGCCCCGTCGTCCACCGCACC
ATCATATTATCATTATCAGATGGAGAAGACGACGCTTAACCCAGCCGCTA
CCGCCAGCATGAAGCACCTGCGCACGCTCTTTGTGGACAAGTATCTGGAG
AATACAGTTAAGCACTTGTGTACCAAGGACGTACCGgtaagtcgatggcg
gaggcgcgattcggatggaggtcttggtgtccagagggccgaatgggagg
ggataaagagacgtggcaggcggagggaaggcgtgatgctttgccgtggg
cgtgagattaaaaagcccccacggttgggatatggcattttcgggagggg
aatagaagaattgattgacgaggcgggtcctgggcatgaatgggtgcggt
ggccttcgagggttggtaggagctcattccgcttgaccctgtacccacgc
agtctctgcgcccgccacgtagtcgaaaagaggggcgtcgcatgaagcgg
tggactgtgttgcatcacatcactcccccattctctccccttgtctgcca
cgcacatgtccctgctcctcaacaagccctccgcaatctctcacccccct
tcccttctcgaccgtccttaatatcgatttagGAAACCTTCGGCGGACTC
AAAGATCAACTCGACGGTCCCCTCTTTAATATTCTCATGACATTGGTCAA
GGAGAAGATGCAGGGCCTCGGACCCTTCGCCCAGAACGAATTTGAGGAGA
TGTGTGCTGAGATGGGATTGGAAGACAAATTTCGACAAGTGGAGACCCAG
GAGGCTGCGAAAGTCGCGGCCGCCCAAGCAGTGGTCACGGCGGCGGAGAA
AAAGAAGTCCGATGCGGTTGCTGCTGCACTGGCGGCAGCGGCGGCGGCGG
TTAGGAGGAAAGGGGGAAACGGGCCCGCGGGGCAGGTAGGGGAGGAGGAC
AGCAGTGATCGGCTAGGTGGCATGACTCCTGAGGGCTTGGCTCGACATCG
ACGTATGGTGATAAAGCGGAAGGAGTTGACGGAGCTGCAGGGTATGCATG
AGAAGgtacgtgttaaagatgtcagagatgtagggtatcacacacctgga
ttttcgggcatggggttgacgcaacaacgtccctcttgtcatccccatct
accaccgcccaccctccaacataaataatagGAGGCATCGCTGTACTCAG
AAGCGGAGGAAGACTTGAAGGTGGCCAAGAATAAGATGAAGGAGGTGTAT
AATGACTTGGGCACCCTTGCTCCTGAGGCGCAGAGGCTCCTGCAACGCTG
TGTTGAAAACTGAAGAGTCGATGTCCGATGGGAGTTTACACGTGTGTTGT
GGCTTGATACCAACTGGGAGGGGAGGAGCGGGAATGGGACAAGGGGGCGC
AGGCAGAGTATGTGTTTGCGACTTTAAAAAAAGGCAATGGACGTGTATGT
GGGTTGAGGAAATACCACAAAGTACGGAAAGGTCGACAAATGCGAAGGGA
CCCAGCGACGAGTGAAAAGGAAGGCCATATCTTCCGAACATGTGTATTAT
CGGGACGAGGCATATTCAAAAGAAACCCTAACCCTACATATCAACAATAA
CAAACGAGCAGACAACAAAAA
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protein sequence of NO11G01290.1

>NO11G01290.1-protein ID=NO11G01290.1-protein|Name=NO11G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MEKTTLNPAATASMKHLRTLFVDKYLENTVKHLCTKDVPETFGGLKDQLD
GPLFNILMTLVKEKMQGLGPFAQNEFEEMCAEMGLEDKFRQVETQEAAKV
AAAQAVVTAAEKKKSDAVAAALAAAAAAVRRKGGNGPAGQVGEEDSSDRL
GGMTPEGLARHRRMVIKRKELTELQGMHEKEASLYSEAEEDLKVAKNKMK
EVYNDLGTLAPEAQRLLQRCVEN*
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protein sequence of NO11G01290.2

>NO11G01290.2-protein ID=NO11G01290.2-protein|Name=NO11G01290.2|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MEKTTLNPAATASMKHLRTLFVDKYLENTVKHLCTKDVPETFGGLKDQLD
GPLFNILMTLVKEKMQGLGPFAQNEFEEMCAEMGLEDKFRQVETQEAAKV
AAAQAVVTAAEKKKSDAVAAALAAAAAAVRRKGGNGPAGQVGEEDSSDRL
GGMTPEGLARHRRMVIKRKELTELQGMHEKVRVKDVRDVGYHTPGFSGMG
LTQQRPSCHPHLPPPTLQHK*
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Synonyms
Publications