|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr11 | genome | chr11:449941..451561 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G01290.2 vs.
Match: EWM25115.1 (hypothetical protein Naga_100016g7 [Nannochloropsis gaditana]) HSP 1 Score: 166.4 bits (420), Expect = 1.000e-37 Identity = 95/171 (55.56%), Postives = 112/171 (65.50%), Query Frame = 0
Query: 11 TASMKHLRTLFVDKYLENTVKHLCTKDVPETFGGLKDQLDGPLFNILMTLVKEKMQGLGPFAQNEFEEMCAEMGLEDKFRQVETQEAAKVAAAQAVVTAAEKKKSDAVAAALAAAAAAVRRKGGNGPAGQVGEEDSSDRLG-GMTPEGLARHRRMVIKRKELTELQGMHEK 181
TA MKHLRTLFVDKYLE++ KHLCT D+PE F LK QLDGP FNILMT+VKEKMQ LGPFAQ EF+E+C E+GLEDKFRQVE Q + AA +++ + A P Q G E+ +D + M PE ARHRRMVIKRKEL EL+GM E+
Sbjct: 10 TARMKHLRTLFVDKYLESSTKHLCTTDIPEAFADLKSQLDGPSFNILMTMVKEKMQALGPFAQKEFQELCTELGLEDKFRQVEAQ----------ISEAATHREAASRTKGRRNARTGKEGMKSTDPQEQFGNENCNDSVADDMPPEDSARHRRMVIKRKELAELRGMQER 170
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G01290.2 ID=NO11G01290.2|Name=NO11G01290.2|organism=Nannochloropsis oceanica|type=mRNA|length=1175bp
AGCCCGCTCTCTCCGCCCTCAACAGCCACCGCCCCGTCGTCCACCGCACC
ATCATATTATCATTATCAGATGGAGAAGACGACGCTTAACCCAGCCGCTA
CCGCCAGCATGAAGCACCTGCGCACGCTCTTTGTGGACAAGTATCTGGAG
AATACAGTTAAGCACTTGTGTACCAAGGACGTACCGGAAACCTTCGGCGG
ACTCAAAGATCAACTCGACGGTCCCCTCTTTAATATTCTCATGACATTGG
TCAAGGAGAAGATGCAGGGCCTCGGACCCTTCGCCCAGAACGAATTTGAG
GAGATGTGTGCTGAGATGGGATTGGAAGACAAATTTCGACAAGTGGAGAC
CCAGGAGGCTGCGAAAGTCGCGGCCGCCCAAGCAGTGGTCACGGCGGCGG
AGAAAAAGAAGTCCGATGCGGTTGCTGCTGCACTGGCGGCAGCGGCGGCG
GCGGTTAGGAGGAAAGGGGGAAACGGGCCCGCGGGGCAGGTAGGGGAGGA
GGACAGCAGTGATCGGCTAGGTGGCATGACTCCTGAGGGCTTGGCTCGAC
ATCGACGTATGGTGATAAAGCGGAAGGAGTTGACGGAGCTGCAGGGTATG
CATGAGAAGGTACGTGTTAAAGATGTCAGAGATGTAGGGTATCACACACC
TGGATTTTCGGGCATGGGGTTGACGCAACAACGTCCCTCTTGTCATCCCC
ATCTACCACCGCCCACCCTCCAACATAAATAATAGGAGGCATCGCTGTAC
TCAGAAGCGGAGGAAGACTTGAAGGTGGCCAAGAATAAGATGAAGGAGGT
GTATAATGACTTGGGCACCCTTGCTCCTGAGGCGCAGAGGCTCCTGCAAC
GCTGTGTTGAAAACTGAAGAGTCGATGTCCGATGGGAGTTTACACGTGTG
TTGTGGCTTGATACCAACTGGGAGGGGAGGAGCGGGAATGGGACAAGGGG
GCGCAGGCAGAGTATGTGTTTGCGACTTTAAAAAAAGGCAATGGACGTGT
ATGTGGGTTGAGGAAATACCACAAAGTACGGAAAGGTCGACAAATGCGAA
GGGACCCAGCGACGAGTGAAAAGGAAGGCCATATCTTCCGAACATGTGTA
TTATCGGGACGAGGCATATTCAAAAGAAACCCTAACCCTACATATCAACA
ATAACAAACGAGCAGACAACAAAAA back to topprotein sequence of NO11G01290.2 >NO11G01290.2-protein ID=NO11G01290.2-protein|Name=NO11G01290.2|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MEKTTLNPAATASMKHLRTLFVDKYLENTVKHLCTKDVPETFGGLKDQLD
GPLFNILMTLVKEKMQGLGPFAQNEFEEMCAEMGLEDKFRQVETQEAAKV
AAAQAVVTAAEKKKSDAVAAALAAAAAAVRRKGGNGPAGQVGEEDSSDRL
GGMTPEGLARHRRMVIKRKELTELQGMHEKVRVKDVRDVGYHTPGFSGMG
LTQQRPSCHPHLPPPTLQHK* back to topmRNA from alignment at chr11:449941..451561+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G01290.2 ID=NO11G01290.2|Name=NO11G01290.2|organism=Nannochloropsis oceanica|type=mRNA|length=1621bp|location=Sequence derived from alignment at chr11:449941..451561+ (Nannochloropsis oceanica)
AGCCCGCTCTCTCCGCCCTCAACAGCCACCGCCCCGTCGTCCACCGCACC
ATCATATTATCATTATCAGATGGAGAAGACGACGCTTAACCCAGCCGCTA
CCGCCAGCATGAAGCACCTGCGCACGCTCTTTGTGGACAAGTATCTGGAG
AATACAGTTAAGCACTTGTGTACCAAGGACGTACCGGTAAGTCGATGGCG
GAGGCGCGATTCGGATGGAGGTCTTGGTGTCCAGAGGGCCGAATGGGAGG
GGATAAAGAGACGTGGCAGGCGGAGGGAAGGCGTGATGCTTTGCCGTGGG
CGTGAGATTAAAAAGCCCCCACGGTTGGGATATGGCATTTTCGGGAGGGG
AATAGAAGAATTGATTGACGAGGCGGGTCCTGGGCATGAATGGGTGCGGT
GGCCTTCGAGGGTTGGTAGGAGCTCATTCCGCTTGACCCTGTACCCACGC
AGTCTCTGCGCCCGCCACGTAGTCGAAAAGAGGGGCGTCGCATGAAGCGG
TGGACTGTGTTGCATCACATCACTCCCCCATTCTCTCCCCTTGTCTGCCA
CGCACATGTCCCTGCTCCTCAACAAGCCCTCCGCAATCTCTCACCCCCCT
TCCCTTCTCGACCGTCCTTAATATCGATTTAGGAAACCTTCGGCGGACTC
AAAGATCAACTCGACGGTCCCCTCTTTAATATTCTCATGACATTGGTCAA
GGAGAAGATGCAGGGCCTCGGACCCTTCGCCCAGAACGAATTTGAGGAGA
TGTGTGCTGAGATGGGATTGGAAGACAAATTTCGACAAGTGGAGACCCAG
GAGGCTGCGAAAGTCGCGGCCGCCCAAGCAGTGGTCACGGCGGCGGAGAA
AAAGAAGTCCGATGCGGTTGCTGCTGCACTGGCGGCAGCGGCGGCGGCGG
TTAGGAGGAAAGGGGGAAACGGGCCCGCGGGGCAGGTAGGGGAGGAGGAC
AGCAGTGATCGGCTAGGTGGCATGACTCCTGAGGGCTTGGCTCGACATCG
ACGTATGGTGATAAAGCGGAAGGAGTTGACGGAGCTGCAGGGTATGCATG
AGAAGGTACGTGTTAAAGATGTCAGAGATGTAGGGTATCACACACCTGGA
TTTTCGGGCATGGGGTTGACGCAACAACGTCCCTCTTGTCATCCCCATCT
ACCACCGCCCACCCTCCAACATAAATAATAGGAGGCATCGCTGTACTCAG
AAGCGGAGGAAGACTTGAAGGTGGCCAAGAATAAGATGAAGGAGGTGTAT
AATGACTTGGGCACCCTTGCTCCTGAGGCGCAGAGGCTCCTGCAACGCTG
TGTTGAAAACTGAAGAGTCGATGTCCGATGGGAGTTTACACGTGTGTTGT
GGCTTGATACCAACTGGGAGGGGAGGAGCGGGAATGGGACAAGGGGGCGC
AGGCAGAGTATGTGTTTGCGACTTTAAAAAAAGGCAATGGACGTGTATGT
GGGTTGAGGAAATACCACAAAGTACGGAAAGGTCGACAAATGCGAAGGGA
CCCAGCGACGAGTGAAAAGGAAGGCCATATCTTCCGAACATGTGTATTAT
CGGGACGAGGCATATTCAAAAGAAACCCTAACCCTACATATCAACAATAA
CAAACGAGCAGACAACAAAAA back to topCoding sequence (CDS) from alignment at chr11:449941..451561+ >NO11G01290.2 ID=NO11G01290.2|Name=NO11G01290.2|organism=Nannochloropsis oceanica|type=CDS|length=663bp|location=Sequence derived from alignment at chr11:449941..451561+ (Nannochloropsis oceanica)
ATGGAGAAGACGACGCTTAACCCAGCCGCTACCGCCAGCATGAAGCACCT
GCGCACGCTCTTTGTGGACAAGTATCTGGAGAATACAGTTAAGCACTTGT
GTACCAAGGACGTACCGGAAACCTTCGGCGGACTCAAAGATCAACTCGAC
GGTCCCCTCTTTAATATTCTCATGACATTGGTCAAGGAGAAGATGCAGGG
CCTCGGACCCTTCGCCCAGAACGAATTTGAGGAGATGTGTGCTGAGATGG
GATTGGAAGACAAATTTCGACAAGTGGAGACCCAGGAGGCTGCGAAAGTC
GCGGCCGCCCAAGCAGTGGTCACGGCGGCGGAGAAAAAGAAGTCCGATGC
GGTTGCTGCTGCACTGGCGGCAGCGGCGGCGGCGGTTAGGAGGAAAGGGG
GAAACGGGCCCGCGGGGCAGGTAGGGGAGGAGGACAGCAGTGATCGGCTA
GGTGGCATGACTCCTGAGGGCTTGGCTCGACATCGACGTATGGTGATAAA
GCGGAAGGAGTTGACGGAGCTGCAGGGTATGCATGAGAAGGTACGTGTTA
AAGATGTCAGAGATGTAGGGTATCACACACCTGGATTTTCGGGCATGGGG
TTGACGCAACAACGTCCCTCTTGTCATCCCCATCTACCACCGCCCACCCT
CCAACATAAATAA back to top
|