NO11G01190, NO11G01190 (gene) Nannochloropsis oceanica

Overview
NameNO11G01190
Unique NameNO11G01190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length860
Alignment locationchr11:425760..426619 +

Link to JBrowse

Properties
Property NameValue
DescriptionCoiled-coil domain-containing protein 43 homolog
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:425760..426619 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR037666CCDC43
Homology
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BLAST of NO11G01190 vs. NCBI_GenBank
Match: XP_005852530.1 (ccd43 dicdi ame: coiled-coil domain-containing 43-like protein [Nannochloropsis gaditana CCMP526] >EKU23303.1 ccd43 dicdi ame: coiled-coil domain-containing 43-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 210.3 bits (534), Expect = 6.600e-51
Identity = 123/196 (62.76%), Postives = 144/196 (73.47%), Query Frame = 0 
Query:    9 AATFDLEAQLERLSLDSDVYKGYIEGIMDDEDGGKLEERVESVLAFLESATEEDLGGFGAELKKQYEVRHAAEAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANLIERTQGDKATARGREALLNKYAFGDDVVDEDGNPVGKASSGKDGSNEKGEADVLLGALLGENSNKKQVEAAARALREKSKAE 205
            A++FDLE +L RLSLD++VY+GYIEG+MDDED G LEERVE+VLAFL  AT+EDL GF  +LK  ++++HAAEAAR                           XXXXXXXX  L  RT+GD+AT RGREA+LNKYAFGDDVVDEDGNPVGK   GKD  +  GEADV+LGALLG NSNK QVEAAA+A+REKSKAE
Sbjct:    5 ASSFDLERELARLSLDTNVYRGYIEGMMDDEDTGDLEERVEAVLAFLGGATDEDLSGFAIDLKTHHQLKHAAEAARETSLIDADKAKERRRYEERLEQDKKAAXXXXXXXXXXLKSRTEGDRATMRGREAILNKYAFGDDVVDEDGNPVGKPRGGKDDKSGAGEADVVLGALLGANSNKAQVEAAAKAMREKSKAE 200
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BLAST of NO11G01190 vs. NCBI_GenBank
Match: EWM25139.1 (hypothetical protein Naga_100016g18 [Nannochloropsis gaditana])

HSP 1 Score: 201.8 bits (512), Expect = 2.400e-48
Identity = 118/191 (61.78%), Postives = 139/191 (72.77%), Query Frame = 0 
Query:    9 AATFDLEAQLERLSLDSDVYKGYIEGIMDDEDGGKLEERVESVLAFLESATEEDLGGFGAELKKQYEVRHAAEAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANLIERTQGDKATARGREALLNKYAFGDDVVDEDGNPVGKASSGKDGSNEKGEADVLLGALLGENSNKKQVEAAARALRE 200
            A++FDLE +L RLSLD++VY+GYIEG+MDDED G LEERVE+VLAFL  AT+EDL GF  +LK  ++++HAAEAAR                           XXXXXXXX  L  RT+GD+AT RGREA+LNKYAFGDDVVDEDGNPVGK   GKD  +  GEADV+LGALLG NSNK QVEAAA+A+RE
Sbjct:    5 ASSFDLERELARLSLDTNVYRGYIEGMMDDEDTGDLEERVEAVLAFLGGATDEDLSGFAIDLKTHHQLKHAAEAARETSLIDADKAKERRRYEERLEQDKKAAXXXXXXXXXXLKSRTEGDRATMRGREAILNKYAFGDDVVDEDGNPVGKPRGGKDDKSGAGEADVVLGALLGANSNKAQVEAAAKAMRE 195
The following BLAST results are available for this feature:
BLAST of NO11G01190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005852530.16.600e-5162.76ccd43 dicdi ame: coiled-coil domain-containing 43-... [more]
EWM25139.12.400e-4861.78hypothetical protein Naga_100016g18 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL116nonsL116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL114nonsL114Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR021ngnoR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR019ngnoR019Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002150NSK002150Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G01190.1NO11G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671182gene_4999Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100016g18gene5399Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G01190.1NO11G01190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G01190 ID=NO11G01190|Name=NO11G01190|organism=Nannochloropsis oceanica|type=gene|length=860bp
ATGTCCAGCACGGACACAAGAGATGCGGCGACATTCGACCTAGAGGCTCA
GCTCGAGCGCTTGTCCCTCGACTCAGACGTATACAAGGGCTATATTGAGG
GCATCATGGACGACGAGGACGGAGGGAAACTGGAAGAACGCGTGGAGTCC
GTCCTGGCCTTCTTAGAGAGTGCGACGGAGGAGGATCTTGGGGGGTTTGG
AGCGGAACTAAAGAAACAATACGAGGTCCGACATGCAGCTGAGGCAGCAC
GCGCAGCGAGCGTGATAGACGCAGACAAGGCGGAGGAAAGGCGGCGCTAT
GAAGAGCGGTTGGAACAAGACAAGCGAGCTGCGCAAGCCGAACAGGAAAG
ACAGGCAGCCAATTTGATTGAGCGGACGCAGGGAGATAAGGCCACGGCAC
GAGGAAGAGAGGCATTGCTAAATAAATATGCGTTTGGCGACGATGTGGTG
GATGAGGATGGCAACCCTGTAGGGAAAGCAAGTAGTGGGAAGGACGGCAG
TAATGAAAAGGGGGAGGCAGATGTTCTGCTTGGAGCATTGCTAGGTGAGA
ACAGTAACAAGAAGCAGGTGGAGGCGGCGGCGAGGGCGTTGCGTGAGAAG
AGCAAGGCGGAACACGAGAAGAAGGTAATCAGAGAGAAGgtacgcatgtc
ttgcgtgttgaataaagtggaggtgttcaaacacacagtggtggttttat
tttgtggcaaatatgttttcctttgaagcgcacctcctctgccctccctt
cccatcaccacacacctcgatgacagGAACTTCTCATAAAGGAAAAGATG
AAGAAAGAGGCCGAAAAAAGGAGGACACAGAAGAGGGAGAAACAGCGAGG
CTGTGGATGA
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protein sequence of NO11G01190.1

>NO11G01190.1-protein ID=NO11G01190.1-protein|Name=NO11G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MSSTDTRDAATFDLEAQLERLSLDSDVYKGYIEGIMDDEDGGKLEERVES
VLAFLESATEEDLGGFGAELKKQYEVRHAAEAARAASVIDADKAEERRRY
EERLEQDKRAAQAEQERQAANLIERTQGDKATARGREALLNKYAFGDDVV
DEDGNPVGKASSGKDGSNEKGEADVLLGALLGENSNKKQVEAAARALREK
SKAEHEKKVIREKELLIKEKMKKEAEKRRTQKREKQRGCG*
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Synonyms
Publications