NO11G01190.1, NO11G01190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01190.1
Unique NameNO11G01190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length723
Alignment locationchr11:425760..426619 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:425760..426619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01190.1 vs.
Match: EWM25139.1 (hypothetical protein Naga_100016g18 [Nannochloropsis gaditana])

HSP 1 Score: 315.5 bits (807), Expect = 1.500e-82
Identity = 172/232 (74.14%), Postives = 204/232 (87.93%), Query Frame = 0 
Query:    9 AATFDLEAQLERLSLDSDVYKGYIEGIMDDEDGGKLEERVESVLAFLESATEEDLGGFGAELKKQYEVRHAAEAARAASVIDADKAEERRRYEERLEQDKRAAQAEQERQAANLIERTQGDKATARGREALLNKYAFGDDVVDEDGNPVGKASSGKDGSNEKGEADVLLGALLGENSNKKQVEAAARALREKSKAEHEKKVIREKELLIKEKMKKEAEKRRTQKREKQRGCG 241
            A++FDLE +L RLSLD++VY+GYIEG+MDDED G LEERVE+VLAFL  AT+EDL GF  +LK  ++++HAAEAAR  S+IDADKA+ERRRYEERLEQDK+AA+ EQ+RQAA L  RT+GD+AT RGREA+LNKYAFGDDVVDEDGNPVGK   GKD  +  GEADV+LGALLG NSNK QVEAAA+A+REKSKAEHEKKV+REKELL+++KM+KE+EKRRT KREKQRGCG
Sbjct:    5 ASSFDLERELARLSLDTNVYRGYIEGMMDDEDTGDLEERVEAVLAFLGGATDEDLSGFAIDLKTHHQLKHAAEAARETSLIDADKAKERRRYEERLEQDKKAAKTEQDRQAAELKSRTEGDRATMRGREAILNKYAFGDDVVDEDGNPVGKPRGGKDDKSGAGEADVVLGALLGANSNKAQVEAAAKAMREKSKAEHEKKVLREKELLLRDKMRKESEKRRTMKREKQRGCG 236
The following BLAST results are available for this feature:
BLAST of NO11G01190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25139.11.500e-8274.14hypothetical protein Naga_100016g18 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01190NO11G01190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01190.1NO11G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01190.1.cds1NO11G01190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01190.1.cds2NO11G01190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01190.1 ID=NO11G01190.1|Name=NO11G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=723bp
ATGTCCAGCACGGACACAAGAGATGCGGCGACATTCGACCTAGAGGCTCA
GCTCGAGCGCTTGTCCCTCGACTCAGACGTATACAAGGGCTATATTGAGG
GCATCATGGACGACGAGGACGGAGGGAAACTGGAAGAACGCGTGGAGTCC
GTCCTGGCCTTCTTAGAGAGTGCGACGGAGGAGGATCTTGGGGGGTTTGG
AGCGGAACTAAAGAAACAATACGAGGTCCGACATGCAGCTGAGGCAGCAC
GCGCAGCGAGCGTGATAGACGCAGACAAGGCGGAGGAAAGGCGGCGCTAT
GAAGAGCGGTTGGAACAAGACAAGCGAGCTGCGCAAGCCGAACAGGAAAG
ACAGGCAGCCAATTTGATTGAGCGGACGCAGGGAGATAAGGCCACGGCAC
GAGGAAGAGAGGCATTGCTAAATAAATATGCGTTTGGCGACGATGTGGTG
GATGAGGATGGCAACCCTGTAGGGAAAGCAAGTAGTGGGAAGGACGGCAG
TAATGAAAAGGGGGAGGCAGATGTTCTGCTTGGAGCATTGCTAGGTGAGA
ACAGTAACAAGAAGCAGGTGGAGGCGGCGGCGAGGGCGTTGCGTGAGAAG
AGCAAGGCGGAACACGAGAAGAAGGTAATCAGAGAGAAGGAACTTCTCAT
AAAGGAAAAGATGAAGAAAGAGGCCGAAAAAAGGAGGACACAGAAGAGGG
AGAAACAGCGAGGCTGTGGATGA
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protein sequence of NO11G01190.1

>NO11G01190.1-protein ID=NO11G01190.1-protein|Name=NO11G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MSSTDTRDAATFDLEAQLERLSLDSDVYKGYIEGIMDDEDGGKLEERVES
VLAFLESATEEDLGGFGAELKKQYEVRHAAEAARAASVIDADKAEERRRY
EERLEQDKRAAQAEQERQAANLIERTQGDKATARGREALLNKYAFGDDVV
DEDGNPVGKASSGKDGSNEKGEADVLLGALLGENSNKKQVEAAARALREK
SKAEHEKKVIREKELLIKEKMKKEAEKRRTQKREKQRGCG*
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mRNA from alignment at chr11:425760..426619+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01190.1 ID=NO11G01190.1|Name=NO11G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=860bp|location=Sequence derived from alignment at chr11:425760..426619+ (Nannochloropsis oceanica)
ATGTCCAGCACGGACACAAGAGATGCGGCGACATTCGACCTAGAGGCTCA
GCTCGAGCGCTTGTCCCTCGACTCAGACGTATACAAGGGCTATATTGAGG
GCATCATGGACGACGAGGACGGAGGGAAACTGGAAGAACGCGTGGAGTCC
GTCCTGGCCTTCTTAGAGAGTGCGACGGAGGAGGATCTTGGGGGGTTTGG
AGCGGAACTAAAGAAACAATACGAGGTCCGACATGCAGCTGAGGCAGCAC
GCGCAGCGAGCGTGATAGACGCAGACAAGGCGGAGGAAAGGCGGCGCTAT
GAAGAGCGGTTGGAACAAGACAAGCGAGCTGCGCAAGCCGAACAGGAAAG
ACAGGCAGCCAATTTGATTGAGCGGACGCAGGGAGATAAGGCCACGGCAC
GAGGAAGAGAGGCATTGCTAAATAAATATGCGTTTGGCGACGATGTGGTG
GATGAGGATGGCAACCCTGTAGGGAAAGCAAGTAGTGGGAAGGACGGCAG
TAATGAAAAGGGGGAGGCAGATGTTCTGCTTGGAGCATTGCTAGGTGAGA
ACAGTAACAAGAAGCAGGTGGAGGCGGCGGCGAGGGCGTTGCGTGAGAAG
AGCAAGGCGGAACACGAGAAGAAGGTAATCAGAGAGAAGGTACGCATGTC
TTGCGTGTTGAATAAAGTGGAGGTGTTCAAACACACAGTGGTGGTTTTAT
TTTGTGGCAAATATGTTTTCCTTTGAAGCGCACCTCCTCTGCCCTCCCTT
CCCATCACCACACACCTCGATGACAGGAACTTCTCATAAAGGAAAAGATG
AAGAAAGAGGCCGAAAAAAGGAGGACACAGAAGAGGGAGAAACAGCGAGG
CTGTGGATGA
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Coding sequence (CDS) from alignment at chr11:425760..426619+

>NO11G01190.1 ID=NO11G01190.1|Name=NO11G01190.1|organism=Nannochloropsis oceanica|type=CDS|length=723bp|location=Sequence derived from alignment at chr11:425760..426619+ (Nannochloropsis oceanica)
ATGTCCAGCACGGACACAAGAGATGCGGCGACATTCGACCTAGAGGCTCA
GCTCGAGCGCTTGTCCCTCGACTCAGACGTATACAAGGGCTATATTGAGG
GCATCATGGACGACGAGGACGGAGGGAAACTGGAAGAACGCGTGGAGTCC
GTCCTGGCCTTCTTAGAGAGTGCGACGGAGGAGGATCTTGGGGGGTTTGG
AGCGGAACTAAAGAAACAATACGAGGTCCGACATGCAGCTGAGGCAGCAC
GCGCAGCGAGCGTGATAGACGCAGACAAGGCGGAGGAAAGGCGGCGCTAT
GAAGAGCGGTTGGAACAAGACAAGCGAGCTGCGCAAGCCGAACAGGAAAG
ACAGGCAGCCAATTTGATTGAGCGGACGCAGGGAGATAAGGCCACGGCAC
GAGGAAGAGAGGCATTGCTAAATAAATATGCGTTTGGCGACGATGTGGTG
GATGAGGATGGCAACCCTGTAGGGAAAGCAAGTAGTGGGAAGGACGGCAG
TAATGAAAAGGGGGAGGCAGATGTTCTGCTTGGAGCATTGCTAGGTGAGA
ACAGTAACAAGAAGCAGGTGGAGGCGGCGGCGAGGGCGTTGCGTGAGAAG
AGCAAGGCGGAACACGAGAAGAAGGTAATCAGAGAGAAGGAACTTCTCAT
AAAGGAAAAGATGAAGAAAGAGGCCGAAAAAAGGAGGACACAGAAGAGGG
AGAAACAGCGAGGCTGTGGATGA
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Synonyms
Publications