NO11G00980, NO11G00980 (gene) Nannochloropsis oceanica

Overview
NameNO11G00980
Unique NameNO11G00980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1419
Alignment locationchr11:369084..370502 -

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Properties
Property NameValue
DescriptionZinc finger, RanBP2-type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:369084..370502 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036443Znf_RanBP2_sf
IPR001841Znf_RING
Homology
BLAST of NO11G00980 vs. NCBI_GenBank
Match: EWM25151.1 (Zinc finger, RanBP2-type [Nannochloropsis gaditana])

HSP 1 Score: 95.9 bits (237), Expect = 3.600e-16
Identity = 82/229 (35.81%), Postives = 107/229 (46.72%), Query Frame = 0
Query:   93 TTIDLTGSSPLNSGRPTLPSIHAPAAAAA----IAMAGNRNLDRGRDDEVVYDSEDDRSSDMAGSGEA-AGRPKDDGVGG-GGRLKGV-----CNEEDNEEEEDGVQIQCATCTFFNEPDMDICQMCMAPLT-----------NQXXXXXXXXXXXXXXDVRELNAHARWTCPLCTYGGNTRGNXXXXXXEVGRPRRQDMLGSTNNDGYVMVSPDALSRGSGGWGRQRG 300
            T IDLTG+SP   G   + S+H+P +A      +  AG  + D G     V D  D     +   G A  GR   +  G  G    GV       E+ +  E+D VQ+QC  CTF N P MD+CQMC+ PLT           +                  + +  A WTCPLCT+ GN RGN      E+GRPRRQDML + + +GY+MVS +   RG  G    RG
Sbjct:   60 TMIDLTGNSP---GVVDI-SVHSPPSAIEATEDVRTAGGWSCDSGE----VSDRTDVHGEGVVREGHAQEGRCHTNTHGPMGSTGHGVDPAERGGEKGDPGEDDSVQVQCPVCTFNNPPSMDLCQMCVHPLTIGLAGRVLHVQHGRVGGGGRGRESGCGGAGDEDLPALWTCPLCTFCGNRRGNWVCQACEMGRPRRQDMLDAESEEGYLMVS-EGTVRGRAGRPGPRG 279          
BLAST of NO11G00980 vs. NCBI_GenBank
Match: GAQ79751.1 (Zinc finger RING-type domain containing protein [Klebsormidium nitens])

HSP 1 Score: 92.4 bits (228), Expect = 4.000e-15
Identity = 46/106 (43.40%), Postives = 65/106 (61.32%), Query Frame = 0
Query:  368 QDAVDRMSYEDLLNLFGPGHEPQKASEVAVSALPEVTVSSTELERMRRESMGNARDCSVCMEEFELGDVTRRLP-CLHTYHKACIDRWLLQCNAMCPICKVPIAQT 473
            Q  VD MSYE+L   FGPG     AS  A+++LP  T+     ER RR+S+GN   C +C++E   GD  R LP C HT+H+ C+D WL Q + +CP+C+  I ++
Sbjct:  206 QVEVDDMSYEELYEFFGPGRVTYGASPAAIASLPLHTIG----ERDRRDSVGNPIGCPICLQELCAGDRARSLPFCRHTFHQPCVDTWLSQ-HGICPVCRHDIRES 306          
BLAST of NO11G00980 vs. NCBI_GenBank
Match: XP_002503907.1 (predicted protein [Micromonas commoda] >ACO65165.1 predicted protein [Micromonas commoda])

HSP 1 Score: 89.0 bits (219), Expect = 4.400e-14
Identity = 49/111 (44.14%), Postives = 66/111 (59.46%), Query Frame = 0
Query:  360 QQMTMIQQQDAVDRMSYEDLLNLFGPGHE-PQKASEVAVSALPEVTVSSTELERM-RRESMGNARDCSVCMEEFELGDVTRRLP-CLHTYHKACIDRWLLQCNAMCPICKV 468
            Q +  I  Q  VD MSYE+LL+ FGPG E P  A   AV A+P   ++  ++E + R E+    R C VC+E++  GD  + LP C H +H  CIDRWLL C   CP+C+V
Sbjct:  117 QLLEAILVQANVDDMSYEELLDRFGPGIEGPAAAPASAVRAVPRRRLTGKDVEALVRNETRSTERACCVCLEDYGKGDTVKTLPRCGHRFHAHCIDRWLL-CRNACPVCRV 226          
BLAST of NO11G00980 vs. NCBI_GenBank
Match: GAX18308.1 (E3 ubiquitin-protein ligase Arkadia [Fistulifera solaris])

HSP 1 Score: 87.0 bits (214), Expect = 1.700e-13
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = 0
Query:  367 QQDAVDRMSYEDLLNLFGPGHEPQKASEVAVSALPEVTVSSTELERMRRESMGNARDCSVCMEEFELGDVTRRLPCLHTYHKACIDRWLLQCNAMCPICKVPI 470
            +Q  +D M+YE LL  FG G E + A E  + +LP  TV+ T           +  DC +C+E F++GD  + LPCLH +H AC+D+W L+ +A CP+CK  I
Sbjct:  295 RQMNIDGMNYEQLLEAFGDGTENRGADEGDIRSLPVSTVTDTS------TIPNDHSDCMICLETFKVGDERKTLPCLHGFHSACVDKW-LRTSASCPVCKYSI 390          
BLAST of NO11G00980 vs. NCBI_GenBank
Match: GAX16667.1 (E3 ubiquitin-protein ligase Arkadia [Fistulifera solaris])

HSP 1 Score: 85.5 bits (210), Expect = 4.800e-13
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 0
Query:  367 QQDAVDRMSYEDLLNLFGPGHEPQKASEVAVSALPEVTVSSTELERMRRESMGNARDCSVCMEEFELGDVTRRLPCLHTYHKACIDRWLLQCNAMCPICKVPI 470
            +Q  +D M+YE LL  FG G E + A E  + +LP  TV+ T           +  DC +C+E F++GD  + LPCLH +H  C+D+W L+ +A CP+CK  I
Sbjct:  297 RQMNIDGMNYEQLLEAFGDGTENRGADEGDIRSLPVSTVTDTS------TIPNDHSDCMICLETFKVGDERKTLPCLHGFHSTCVDKW-LRTSASCPVCKYSI 392          
BLAST of NO11G00980 vs. NCBI_GenBank
Match: XP_014148296.1 (hypothetical protein SARC_13057, partial [Sphaeroforma arctica JP610] >KNC74394.1 hypothetical protein SARC_13057, partial [Sphaeroforma arctica JP610])

HSP 1 Score: 82.4 bits (202), Expect = 4.100e-12
Identity = 39/110 (35.45%), Postives = 63/110 (57.27%), Query Frame = 0
Query:  357 SQFQQMTMIQQQDAVDRMSYEDLLNLFGPGHEPQKASEVAVSALPEVTVSSTELERMRRESMGNARDCSVCMEEFELGDVTRRLPCLHTYHKACIDRWLLQCNAMCPICK 467
            +Q   ++     D +D M+YE+L+  F P    + A+   + ALP  T+S   + ++   S    ++C +C+E+F+ G+  +RLPCLHTYH  CID WL +    CP+CK
Sbjct:   15 TQVPVVSHFNPSDVIDNMNYEELMQRF-PPQVGRAANRWLIHALPTETLSKAAIAKLEEGS----QNCCICLEDFKAGEKMKRLPCLHTYHDHCIDEWLSR-RGTCPVCK 118          
BLAST of NO11G00980 vs. NCBI_GenBank
Match: XP_009418621.2 (PREDICTED: uncharacterized protein LOC103998767 isoform X1 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 80.5 bits (197), Expect = 1.600e-11
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 0
Query:  363 TMIQQQDAVDRMSYEDLLNLFGPGHEPQKASEVAVSALPEVTVSSTELERMRRESMGNARDCSVCMEEFELGDVTRRLPCLHTYHKACIDRWLLQCNAMCPICKVPIA 471
            T++ Q+D +    YE LL L    H+   ASE  ++ LPE  +          +S GN   C +C+E   +GDV R LPCLH +HK CID WL +   +CP+CK  I+
Sbjct:  796 TLLVQRD-ITEDDYEMLLGLDEDNHQHSGASESQINILPESVI----------QSNGNVEACVICLEPPTVGDVIRHLPCLHKFHKECIDTWLRR-KTLCPVCKSGIS 891          
BLAST of NO11G00980 vs. NCBI_GenBank
Match: XP_017226548.1 (PREDICTED: E3 ubiquitin-protein ligase RNF12 [Daucus carota subsp. sativus] >KZM83215.1 hypothetical protein DCAR_030784 [Daucus carota subsp. sativus])

HSP 1 Score: 79.0 bits (193), Expect = 4.500e-11
Identity = 41/104 (39.42%), Postives = 56/104 (53.85%), Query Frame = 0
Query:  363 TMIQQQDAVDRMSYEDLLNLFGPGHEPQKASEVAVSALPEVTVSSTELERMRRESMGNARDCSVCMEEFELGDVTRRLPCLHTYHKACIDRWLLQCNAMCPICK 467
            +++Q Q   +   YE LL L    H+   AS   ++ALPE TV +  LE           +CS+C+E   +GD  R LPCLH +HK CID W+ +    CPICK
Sbjct:  678 SLLQAQRDFNENDYEMLLALDENNHQHGGASAAQINALPESTVQTDNLE-----------ECSICLETPSIGDTIRHLPCLHKFHKDCIDEWVRR-RTTCPICK 769          
BLAST of NO11G00980 vs. NCBI_GenBank
Match: XP_024368279.1 (uncharacterized protein LOC112278768 isoform X2 [Physcomitrella patens] >PNR60044.1 hypothetical protein PHYPA_002837 [Physcomitrella patens])

HSP 1 Score: 78.6 bits (192), Expect = 5.900e-11
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 0
Query:  376 YEDLLNLFGPGHEPQKASEVAVSALPEVTVSSTELERMRRESMGNARDCSVCMEEFELGDVTRRLPCLHTYHKACIDRWLLQCNAMCPICKVPIA 471
            YE LL L       + AS   ++ LP  T++ T++            DCS+C+E    GD+ RRLPC+H +H+ CID+W LQC A+CP+CK  I+
Sbjct:  600 YEMLLALDTDNSSHRGASMETINQLPVTTIAPTDV----------FEDCSICLEVPVSGDIVRRLPCMHVFHQPCIDQW-LQCQAVCPVCKAHIS 683          
BLAST of NO11G00980 vs. NCBI_GenBank
Match: XP_024368276.1 (uncharacterized protein LOC112278768 isoform X1 [Physcomitrella patens] >XP_024368277.1 uncharacterized protein LOC112278768 isoform X1 [Physcomitrella patens] >XP_024368278.1 uncharacterized protein LOC112278768 isoform X1 [Physcomitrella patens])

HSP 1 Score: 78.6 bits (192), Expect = 5.900e-11
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 0
Query:  376 YEDLLNLFGPGHEPQKASEVAVSALPEVTVSSTELERMRRESMGNARDCSVCMEEFELGDVTRRLPCLHTYHKACIDRWLLQCNAMCPICKVPIA 471
            YE LL L       + AS   ++ LP  T++ T++            DCS+C+E    GD+ RRLPC+H +H+ CID+W LQC A+CP+CK  I+
Sbjct:  610 YEMLLALDTDNSSHRGASMETINQLPVTTIAPTDV----------FEDCSICLEVPVSGDIVRRLPCMHVFHQPCIDQW-LQCQAVCPVCKAHIS 693          
The following BLAST results are available for this feature:
BLAST of NO11G00980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25151.13.600e-1635.81Zinc finger, RanBP2-type [Nannochloropsis gaditana... [more]
GAQ79751.14.000e-1543.40Zinc finger RING-type domain containing protein [K... [more]
XP_002503907.14.400e-1444.14predicted protein [Micromonas commoda] >ACO65165.1... [more]
GAX18308.11.700e-1340.78E3 ubiquitin-protein ligase Arkadia [Fistulifera s... [more]
GAX16667.14.800e-1339.81E3 ubiquitin-protein ligase Arkadia [Fistulifera s... [more]
XP_014148296.14.100e-1235.45hypothetical protein SARC_13057, partial [Sphaerof... [more]
XP_009418621.21.600e-1138.89PREDICTED: uncharacterized protein LOC103998767 is... [more]
XP_017226548.14.500e-1139.42PREDICTED: E3 ubiquitin-protein ligase RNF12 [Dauc... [more]
XP_024368279.15.900e-1140.00uncharacterized protein LOC112278768 isoform X2 [P... [more]
XP_024368276.15.900e-1140.00uncharacterized protein LOC112278768 isoform X1 [P... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002175NSK002175Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00980.1NO11G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590981gene_4972Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100016g44gene5377Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00980.1NO11G00980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00980 ID=NO11G00980|Name=NO11G00980|organism=Nannochloropsis oceanica|type=gene|length=1419bp
ATGGACTCGGACAACTATGACACATGTCCCACTTGCAGCACCAATTACCC
TCCTGTCAACGCGGCCCTACATCAGGCCCGATGTCCAAGGCAGCACCAGC
AGGCACCGCACCACCGTATGCATGTTGCGGCTTCCTCCGCTACCGCACCA
TCGCGGGCTTCCCGAGAGCAGCAGAAGCAGCAGCAGCAAGAGCACGACCA
CGAGGGAGAGGAGGAGCACGAGAAGGAGAAGGAGGGGCACGAGAAGGAGG
AGGAGGGAGAGGAGAGGGAGGAAGCAACAACTATCGACCTGACGGGTAGC
AGCCCCTTAAATTCAGGCAGGCCCACCCTCCCAAGCATCCATGCTCCGGC
GGCCGCGGCAGCGATTGCGATGGCGGGAAACAGGAACCTTGACAGGGGAC
GGGATGATGAGGTGGTATACGATAGCGAGGATGATCGCAGCAGTGATATG
GCCGGTTCGGGGGAGGCGGCAGGCCGTCCAAAGGACGATGGGGTGGGCGG
AGGTGGCAGGCTTAAGGGGGTATGCAACGAAGAGGATAACGAGGAGGAGG
AAGACGGCGTTCAAATTCAGTGCGCCACTTGCACTTTTTTTAACGAACCA
GACATGGACATCTGTCAGATGTGTATGGCACCGCTGACCAATCAGGCCGG
TGGTGGCGGGGGCGGTGGCATGGAGGAACAGGAAAATGATGTGCGAGAAC
TTAACGCGCACGCCCGATGGACTTGTCCATTGTGTACGTACGGCGGTAAT
ACGAGAGGCAATTGGATTTGCCAAGCCTGTGAGGTGGGGCGGCCCCGACG
TCAAGATATGCTTGGCTCGACGAACAATGACGGGTACGTAATGGTATCGC
CCGACGCGCTGAGTCGGGGCAGCGGAGGGTGGGGGAGGCAAAGAGGCGGC
GGGAGAGGAGGAGCTCAGGGGATGCTGGAGGCTGTGGTAACGGGGGCATT
GTTTGGTGGAGGTGCAGCGGGATTAGGATCGGCCCTGGCAGGAGGCACAA
GAGCGGATAGTCATCGTCGCATGCTGATGGGCTCCCTGGTGGGAGGGTTA
GGGGGAGGGATCTTGGGCTCTCAGTTCCAGCAAATGACGATGATCCAACA
GCAGGACGCTGTCGACAGAATGAGCTACGAGGACTTGCTCAATTTATTCG
GTCCTGGGCATGAGCCGCAGAAGGCGAGTGAGGTCGCGGTCAGCGCACTT
CCTGAGGTCACGGTGAGCAGCACGGAACTCGAGAGGATGCGGCGGGAAAG
CATGGGGAATGCGCGCGACTGCAGTGTGTGTATGGAAGAATTTGAGCTGG
GTGACGTCACTAGGCGCCTGCCCTGCTTGCACACGTATCACAAGGCGTGC
ATTGACCGGTGGCTACTTCAGTGCAATGCCATGTGCCCTATCTGCAAGGT
CCCCATTGCCCAGACATGA
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protein sequence of NO11G00980.1

>NO11G00980.1-protein ID=NO11G00980.1-protein|Name=NO11G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MDSDNYDTCPTCSTNYPPVNAALHQARCPRQHQQAPHHRMHVAASSATAP
SRASREQQKQQQQEHDHEGEEEHEKEKEGHEKEEEGEEREEATTIDLTGS
SPLNSGRPTLPSIHAPAAAAAIAMAGNRNLDRGRDDEVVYDSEDDRSSDM
AGSGEAAGRPKDDGVGGGGRLKGVCNEEDNEEEEDGVQIQCATCTFFNEP
DMDICQMCMAPLTNQAGGGGGGGMEEQENDVRELNAHARWTCPLCTYGGN
TRGNWICQACEVGRPRRQDMLGSTNNDGYVMVSPDALSRGSGGWGRQRGG
GRGGAQGMLEAVVTGALFGGGAAGLGSALAGGTRADSHRRMLMGSLVGGL
GGGILGSQFQQMTMIQQQDAVDRMSYEDLLNLFGPGHEPQKASEVAVSAL
PEVTVSSTELERMRRESMGNARDCSVCMEEFELGDVTRRLPCLHTYHKAC
IDRWLLQCNAMCPICKVPIAQT*
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Synonyms
Publications