NO11G00980.1, NO11G00980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00980.1
Unique NameNO11G00980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1419
Alignment locationchr11:369084..370502 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:369084..370502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G00980.1 vs.
Match: EWM25151.1 (Zinc finger, RanBP2-type [Nannochloropsis gaditana])

HSP 1 Score: 169.1 bits (427), Expect = 3.300e-38
Identity = 129/302 (42.72%), Postives = 162/302 (53.64%), Query Frame = 0
Query:   84 EEGEEREEATTIDLTGSSPLNSGRPTLPSIHAPAAAAA----IAMAGNRNLDRGRDDEVVYDSEDDRSSDMAGSGEAA-GRPKDDGVGGGGRL-KGVCNEEDNEE-----EEDGVQIQCATCTFFNEPDMDICQMCMAPLT-NQAG----------GGGGGGMEEQENDVRELNAHARWTCPLCTYGGNTRGNWICQACEVGRPRRQDMLGSTNNDGYVMVSPDALSRGSG-----GWGRQRGGGRGGAQGM--LEAVVTGALFGGGAAGLGSALAGGTRADSHRRMLMGSLVGGLGGGILG 357
            +E    E  T IDLTG+SP   G   + S+H+P +A      +  AG  + D G     V D  D     +   G A  GR   +  G  G    GV   E   E     E+D VQ+QC  CTF N P MD+CQMC+ PLT   AG          GGGG G E       + +  A WTCPLCT+ GN RGNW+CQACE+GRPRRQDML + + +GY+MVS   +   +G     G    R GGR     M  LE VV GAL G G AG+GSA+AGG+R++  RR  +G +VGGLG G+LG
Sbjct:   51 DEHNSDEGTTMIDLTGNSP---GVVDI-SVHSPPSAIEATEDVRTAGGWSCDSGE----VSDRTDVHGEGVVREGHAQEGRCHTNTHGPMGSTGHGVDPAERGGEKGDPGEDDSVQVQCPVCTFNNPPSMDLCQMCVHPLTIGLAGRVLHVQHGRVGGGGRGRESGCGGAGDEDLPALWTCPLCTFCGNRRGNWVCQACEMGRPRRQDMLDAESEEGYLMVSEGTVRGRAGRPGPRGRSPARAGGRVADTSMQTLEDVVRGALLGSGVAGVGSAVAGGSRSEHRRRAFIGGVVGGLGAGLLG 344          
The following BLAST results are available for this feature:
BLAST of NO11G00980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25151.13.300e-3842.72Zinc finger, RanBP2-type [Nannochloropsis gaditana... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00980NO11G00980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00980.1NO11G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00980.1.cds1NO11G00980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00980.1 ID=NO11G00980.1|Name=NO11G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1419bp
ATGGACTCGGACAACTATGACACATGTCCCACTTGCAGCACCAATTACCC
TCCTGTCAACGCGGCCCTACATCAGGCCCGATGTCCAAGGCAGCACCAGC
AGGCACCGCACCACCGTATGCATGTTGCGGCTTCCTCCGCTACCGCACCA
TCGCGGGCTTCCCGAGAGCAGCAGAAGCAGCAGCAGCAAGAGCACGACCA
CGAGGGAGAGGAGGAGCACGAGAAGGAGAAGGAGGGGCACGAGAAGGAGG
AGGAGGGAGAGGAGAGGGAGGAAGCAACAACTATCGACCTGACGGGTAGC
AGCCCCTTAAATTCAGGCAGGCCCACCCTCCCAAGCATCCATGCTCCGGC
GGCCGCGGCAGCGATTGCGATGGCGGGAAACAGGAACCTTGACAGGGGAC
GGGATGATGAGGTGGTATACGATAGCGAGGATGATCGCAGCAGTGATATG
GCCGGTTCGGGGGAGGCGGCAGGCCGTCCAAAGGACGATGGGGTGGGCGG
AGGTGGCAGGCTTAAGGGGGTATGCAACGAAGAGGATAACGAGGAGGAGG
AAGACGGCGTTCAAATTCAGTGCGCCACTTGCACTTTTTTTAACGAACCA
GACATGGACATCTGTCAGATGTGTATGGCACCGCTGACCAATCAGGCCGG
TGGTGGCGGGGGCGGTGGCATGGAGGAACAGGAAAATGATGTGCGAGAAC
TTAACGCGCACGCCCGATGGACTTGTCCATTGTGTACGTACGGCGGTAAT
ACGAGAGGCAATTGGATTTGCCAAGCCTGTGAGGTGGGGCGGCCCCGACG
TCAAGATATGCTTGGCTCGACGAACAATGACGGGTACGTAATGGTATCGC
CCGACGCGCTGAGTCGGGGCAGCGGAGGGTGGGGGAGGCAAAGAGGCGGC
GGGAGAGGAGGAGCTCAGGGGATGCTGGAGGCTGTGGTAACGGGGGCATT
GTTTGGTGGAGGTGCAGCGGGATTAGGATCGGCCCTGGCAGGAGGCACAA
GAGCGGATAGTCATCGTCGCATGCTGATGGGCTCCCTGGTGGGAGGGTTA
GGGGGAGGGATCTTGGGCTCTCAGTTCCAGCAAATGACGATGATCCAACA
GCAGGACGCTGTCGACAGAATGAGCTACGAGGACTTGCTCAATTTATTCG
GTCCTGGGCATGAGCCGCAGAAGGCGAGTGAGGTCGCGGTCAGCGCACTT
CCTGAGGTCACGGTGAGCAGCACGGAACTCGAGAGGATGCGGCGGGAAAG
CATGGGGAATGCGCGCGACTGCAGTGTGTGTATGGAAGAATTTGAGCTGG
GTGACGTCACTAGGCGCCTGCCCTGCTTGCACACGTATCACAAGGCGTGC
ATTGACCGGTGGCTACTTCAGTGCAATGCCATGTGCCCTATCTGCAAGGT
CCCCATTGCCCAGACATGA
back to top

protein sequence of NO11G00980.1

>NO11G00980.1-protein ID=NO11G00980.1-protein|Name=NO11G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MDSDNYDTCPTCSTNYPPVNAALHQARCPRQHQQAPHHRMHVAASSATAP
SRASREQQKQQQQEHDHEGEEEHEKEKEGHEKEEEGEEREEATTIDLTGS
SPLNSGRPTLPSIHAPAAAAAIAMAGNRNLDRGRDDEVVYDSEDDRSSDM
AGSGEAAGRPKDDGVGGGGRLKGVCNEEDNEEEEDGVQIQCATCTFFNEP
DMDICQMCMAPLTNQAGGGGGGGMEEQENDVRELNAHARWTCPLCTYGGN
TRGNWICQACEVGRPRRQDMLGSTNNDGYVMVSPDALSRGSGGWGRQRGG
GRGGAQGMLEAVVTGALFGGGAAGLGSALAGGTRADSHRRMLMGSLVGGL
GGGILGSQFQQMTMIQQQDAVDRMSYEDLLNLFGPGHEPQKASEVAVSAL
PEVTVSSTELERMRRESMGNARDCSVCMEEFELGDVTRRLPCLHTYHKAC
IDRWLLQCNAMCPICKVPIAQT*
back to top

mRNA from alignment at chr11:369084..370502-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00980.1 ID=NO11G00980.1|Name=NO11G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1419bp|location=Sequence derived from alignment at chr11:369084..370502- (Nannochloropsis oceanica)
ATGGACTCGGACAACTATGACACATGTCCCACTTGCAGCACCAATTACCC TCCTGTCAACGCGGCCCTACATCAGGCCCGATGTCCAAGGCAGCACCAGC AGGCACCGCACCACCGTATGCATGTTGCGGCTTCCTCCGCTACCGCACCA TCGCGGGCTTCCCGAGAGCAGCAGAAGCAGCAGCAGCAAGAGCACGACCA CGAGGGAGAGGAGGAGCACGAGAAGGAGAAGGAGGGGCACGAGAAGGAGG AGGAGGGAGAGGAGAGGGAGGAAGCAACAACTATCGACCTGACGGGTAGC AGCCCCTTAAATTCAGGCAGGCCCACCCTCCCAAGCATCCATGCTCCGGC GGCCGCGGCAGCGATTGCGATGGCGGGAAACAGGAACCTTGACAGGGGAC GGGATGATGAGGTGGTATACGATAGCGAGGATGATCGCAGCAGTGATATG GCCGGTTCGGGGGAGGCGGCAGGCCGTCCAAAGGACGATGGGGTGGGCGG AGGTGGCAGGCTTAAGGGGGTATGCAACGAAGAGGATAACGAGGAGGAGG AAGACGGCGTTCAAATTCAGTGCGCCACTTGCACTTTTTTTAACGAACCA GACATGGACATCTGTCAGATGTGTATGGCACCGCTGACCAATCAGGCCGG TGGTGGCGGGGGCGGTGGCATGGAGGAACAGGAAAATGATGTGCGAGAAC TTAACGCGCACGCCCGATGGACTTGTCCATTGTGTACGTACGGCGGTAAT ACGAGAGGCAATTGGATTTGCCAAGCCTGTGAGGTGGGGCGGCCCCGACG TCAAGATATGCTTGGCTCGACGAACAATGACGGGTACGTAATGGTATCGC CCGACGCGCTGAGTCGGGGCAGCGGAGGGTGGGGGAGGCAAAGAGGCGGC GGGAGAGGAGGAGCTCAGGGGATGCTGGAGGCTGTGGTAACGGGGGCATT GTTTGGTGGAGGTGCAGCGGGATTAGGATCGGCCCTGGCAGGAGGCACAA GAGCGGATAGTCATCGTCGCATGCTGATGGGCTCCCTGGTGGGAGGGTTA GGGGGAGGGATCTTGGGCTCTCAGTTCCAGCAAATGACGATGATCCAACA GCAGGACGCTGTCGACAGAATGAGCTACGAGGACTTGCTCAATTTATTCG GTCCTGGGCATGAGCCGCAGAAGGCGAGTGAGGTCGCGGTCAGCGCACTT CCTGAGGTCACGGTGAGCAGCACGGAACTCGAGAGGATGCGGCGGGAAAG CATGGGGAATGCGCGCGACTGCAGTGTGTGTATGGAAGAATTTGAGCTGG GTGACGTCACTAGGCGCCTGCCCTGCTTGCACACGTATCACAAGGCGTGC ATTGACCGGTGGCTACTTCAGTGCAATGCCATGTGCCCTATCTGCAAGGT CCCCATTGCCCAGACATGA
back to top

Coding sequence (CDS) from alignment at chr11:369084..370502-

>NO11G00980.1 ID=NO11G00980.1|Name=NO11G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=1419bp|location=Sequence derived from alignment at chr11:369084..370502- (Nannochloropsis oceanica)
ATGGACTCGGACAACTATGACACATGTCCCACTTGCAGCACCAATTACCC
TCCTGTCAACGCGGCCCTACATCAGGCCCGATGTCCAAGGCAGCACCAGC
AGGCACCGCACCACCGTATGCATGTTGCGGCTTCCTCCGCTACCGCACCA
TCGCGGGCTTCCCGAGAGCAGCAGAAGCAGCAGCAGCAAGAGCACGACCA
CGAGGGAGAGGAGGAGCACGAGAAGGAGAAGGAGGGGCACGAGAAGGAGG
AGGAGGGAGAGGAGAGGGAGGAAGCAACAACTATCGACCTGACGGGTAGC
AGCCCCTTAAATTCAGGCAGGCCCACCCTCCCAAGCATCCATGCTCCGGC
GGCCGCGGCAGCGATTGCGATGGCGGGAAACAGGAACCTTGACAGGGGAC
GGGATGATGAGGTGGTATACGATAGCGAGGATGATCGCAGCAGTGATATG
GCCGGTTCGGGGGAGGCGGCAGGCCGTCCAAAGGACGATGGGGTGGGCGG
AGGTGGCAGGCTTAAGGGGGTATGCAACGAAGAGGATAACGAGGAGGAGG
AAGACGGCGTTCAAATTCAGTGCGCCACTTGCACTTTTTTTAACGAACCA
GACATGGACATCTGTCAGATGTGTATGGCACCGCTGACCAATCAGGCCGG
TGGTGGCGGGGGCGGTGGCATGGAGGAACAGGAAAATGATGTGCGAGAAC
TTAACGCGCACGCCCGATGGACTTGTCCATTGTGTACGTACGGCGGTAAT
ACGAGAGGCAATTGGATTTGCCAAGCCTGTGAGGTGGGGCGGCCCCGACG
TCAAGATATGCTTGGCTCGACGAACAATGACGGGTACGTAATGGTATCGC
CCGACGCGCTGAGTCGGGGCAGCGGAGGGTGGGGGAGGCAAAGAGGCGGC
GGGAGAGGAGGAGCTCAGGGGATGCTGGAGGCTGTGGTAACGGGGGCATT
GTTTGGTGGAGGTGCAGCGGGATTAGGATCGGCCCTGGCAGGAGGCACAA
GAGCGGATAGTCATCGTCGCATGCTGATGGGCTCCCTGGTGGGAGGGTTA
GGGGGAGGGATCTTGGGCTCTCAGTTCCAGCAAATGACGATGATCCAACA
GCAGGACGCTGTCGACAGAATGAGCTACGAGGACTTGCTCAATTTATTCG
GTCCTGGGCATGAGCCGCAGAAGGCGAGTGAGGTCGCGGTCAGCGCACTT
CCTGAGGTCACGGTGAGCAGCACGGAACTCGAGAGGATGCGGCGGGAAAG
CATGGGGAATGCGCGCGACTGCAGTGTGTGTATGGAAGAATTTGAGCTGG
GTGACGTCACTAGGCGCCTGCCCTGCTTGCACACGTATCACAAGGCGTGC
ATTGACCGGTGGCTACTTCAGTGCAATGCCATGTGCCCTATCTGCAAGGT
CCCCATTGCCCAGACATGA
back to top
Synonyms
Publications