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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:369084..370502 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G00980.1 vs.
Match: EWM25151.1 (Zinc finger, RanBP2-type [Nannochloropsis gaditana]) HSP 1 Score: 169.1 bits (427), Expect = 3.300e-38 Identity = 129/302 (42.72%), Postives = 162/302 (53.64%), Query Frame = 0
Query: 84 EEGEEREEATTIDLTGSSPLNSGRPTLPSIHAPAAAAA----IAMAGNRNLDRGRDDEVVYDSEDDRSSDMAGSGEAA-GRPKDDGVGGGGRL-KGVCNEEDNEE-----EEDGVQIQCATCTFFNEPDMDICQMCMAPLT-NQAG----------GGGGGGMEEQENDVRELNAHARWTCPLCTYGGNTRGNWICQACEVGRPRRQDMLGSTNNDGYVMVSPDALSRGSG-----GWGRQRGGGRGGAQGM--LEAVVTGALFGGGAAGLGSALAGGTRADSHRRMLMGSLVGGLGGGILG 357
+E E T IDLTG+SP G + S+H+P +A + AG + D G V D D + G A GR + G G GV E E E+D VQ+QC CTF N P MD+CQMC+ PLT AG GGGG G E + + A WTCPLCT+ GN RGNW+CQACE+GRPRRQDML + + +GY+MVS + +G G R GGR M LE VV GAL G G AG+GSA+AGG+R++ RR +G +VGGLG G+LG
Sbjct: 51 DEHNSDEGTTMIDLTGNSP---GVVDI-SVHSPPSAIEATEDVRTAGGWSCDSGE----VSDRTDVHGEGVVREGHAQEGRCHTNTHGPMGSTGHGVDPAERGGEKGDPGEDDSVQVQCPVCTFNNPPSMDLCQMCVHPLTIGLAGRVLHVQHGRVGGGGRGRESGCGGAGDEDLPALWTCPLCTFCGNRRGNWVCQACEMGRPRRQDMLDAESEEGYLMVSEGTVRGRAGRPGPRGRSPARAGGRVADTSMQTLEDVVRGALLGSGVAGVGSAVAGGSRSEHRRRAFIGGVVGGLGAGLLG 344
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G00980.1 ID=NO11G00980.1|Name=NO11G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1419bp ATGGACTCGGACAACTATGACACATGTCCCACTTGCAGCACCAATTACCC TCCTGTCAACGCGGCCCTACATCAGGCCCGATGTCCAAGGCAGCACCAGC AGGCACCGCACCACCGTATGCATGTTGCGGCTTCCTCCGCTACCGCACCA TCGCGGGCTTCCCGAGAGCAGCAGAAGCAGCAGCAGCAAGAGCACGACCA CGAGGGAGAGGAGGAGCACGAGAAGGAGAAGGAGGGGCACGAGAAGGAGG AGGAGGGAGAGGAGAGGGAGGAAGCAACAACTATCGACCTGACGGGTAGC AGCCCCTTAAATTCAGGCAGGCCCACCCTCCCAAGCATCCATGCTCCGGC GGCCGCGGCAGCGATTGCGATGGCGGGAAACAGGAACCTTGACAGGGGAC GGGATGATGAGGTGGTATACGATAGCGAGGATGATCGCAGCAGTGATATG GCCGGTTCGGGGGAGGCGGCAGGCCGTCCAAAGGACGATGGGGTGGGCGG AGGTGGCAGGCTTAAGGGGGTATGCAACGAAGAGGATAACGAGGAGGAGG AAGACGGCGTTCAAATTCAGTGCGCCACTTGCACTTTTTTTAACGAACCA GACATGGACATCTGTCAGATGTGTATGGCACCGCTGACCAATCAGGCCGG TGGTGGCGGGGGCGGTGGCATGGAGGAACAGGAAAATGATGTGCGAGAAC TTAACGCGCACGCCCGATGGACTTGTCCATTGTGTACGTACGGCGGTAAT ACGAGAGGCAATTGGATTTGCCAAGCCTGTGAGGTGGGGCGGCCCCGACG TCAAGATATGCTTGGCTCGACGAACAATGACGGGTACGTAATGGTATCGC CCGACGCGCTGAGTCGGGGCAGCGGAGGGTGGGGGAGGCAAAGAGGCGGC GGGAGAGGAGGAGCTCAGGGGATGCTGGAGGCTGTGGTAACGGGGGCATT GTTTGGTGGAGGTGCAGCGGGATTAGGATCGGCCCTGGCAGGAGGCACAA GAGCGGATAGTCATCGTCGCATGCTGATGGGCTCCCTGGTGGGAGGGTTA GGGGGAGGGATCTTGGGCTCTCAGTTCCAGCAAATGACGATGATCCAACA GCAGGACGCTGTCGACAGAATGAGCTACGAGGACTTGCTCAATTTATTCG GTCCTGGGCATGAGCCGCAGAAGGCGAGTGAGGTCGCGGTCAGCGCACTT CCTGAGGTCACGGTGAGCAGCACGGAACTCGAGAGGATGCGGCGGGAAAG CATGGGGAATGCGCGCGACTGCAGTGTGTGTATGGAAGAATTTGAGCTGG GTGACGTCACTAGGCGCCTGCCCTGCTTGCACACGTATCACAAGGCGTGC ATTGACCGGTGGCTACTTCAGTGCAATGCCATGTGCCCTATCTGCAAGGT CCCCATTGCCCAGACATGA back to topprotein sequence of NO11G00980.1 >NO11G00980.1-protein ID=NO11G00980.1-protein|Name=NO11G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp MDSDNYDTCPTCSTNYPPVNAALHQARCPRQHQQAPHHRMHVAASSATAP SRASREQQKQQQQEHDHEGEEEHEKEKEGHEKEEEGEEREEATTIDLTGS SPLNSGRPTLPSIHAPAAAAAIAMAGNRNLDRGRDDEVVYDSEDDRSSDM AGSGEAAGRPKDDGVGGGGRLKGVCNEEDNEEEEDGVQIQCATCTFFNEP DMDICQMCMAPLTNQAGGGGGGGMEEQENDVRELNAHARWTCPLCTYGGN TRGNWICQACEVGRPRRQDMLGSTNNDGYVMVSPDALSRGSGGWGRQRGG GRGGAQGMLEAVVTGALFGGGAAGLGSALAGGTRADSHRRMLMGSLVGGL GGGILGSQFQQMTMIQQQDAVDRMSYEDLLNLFGPGHEPQKASEVAVSAL PEVTVSSTELERMRRESMGNARDCSVCMEEFELGDVTRRLPCLHTYHKAC IDRWLLQCNAMCPICKVPIAQT* back to topmRNA from alignment at chr11:369084..370502- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G00980.1 ID=NO11G00980.1|Name=NO11G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1419bp|location=Sequence derived from alignment at chr11:369084..370502- (Nannochloropsis oceanica) ATGGACTCGGACAACTATGACACATGTCCCACTTGCAGCACCAATTACCC
TCCTGTCAACGCGGCCCTACATCAGGCCCGATGTCCAAGGCAGCACCAGC
AGGCACCGCACCACCGTATGCATGTTGCGGCTTCCTCCGCTACCGCACCA
TCGCGGGCTTCCCGAGAGCAGCAGAAGCAGCAGCAGCAAGAGCACGACCA
CGAGGGAGAGGAGGAGCACGAGAAGGAGAAGGAGGGGCACGAGAAGGAGG
AGGAGGGAGAGGAGAGGGAGGAAGCAACAACTATCGACCTGACGGGTAGC
AGCCCCTTAAATTCAGGCAGGCCCACCCTCCCAAGCATCCATGCTCCGGC
GGCCGCGGCAGCGATTGCGATGGCGGGAAACAGGAACCTTGACAGGGGAC
GGGATGATGAGGTGGTATACGATAGCGAGGATGATCGCAGCAGTGATATG
GCCGGTTCGGGGGAGGCGGCAGGCCGTCCAAAGGACGATGGGGTGGGCGG
AGGTGGCAGGCTTAAGGGGGTATGCAACGAAGAGGATAACGAGGAGGAGG
AAGACGGCGTTCAAATTCAGTGCGCCACTTGCACTTTTTTTAACGAACCA
GACATGGACATCTGTCAGATGTGTATGGCACCGCTGACCAATCAGGCCGG
TGGTGGCGGGGGCGGTGGCATGGAGGAACAGGAAAATGATGTGCGAGAAC
TTAACGCGCACGCCCGATGGACTTGTCCATTGTGTACGTACGGCGGTAAT
ACGAGAGGCAATTGGATTTGCCAAGCCTGTGAGGTGGGGCGGCCCCGACG
TCAAGATATGCTTGGCTCGACGAACAATGACGGGTACGTAATGGTATCGC
CCGACGCGCTGAGTCGGGGCAGCGGAGGGTGGGGGAGGCAAAGAGGCGGC
GGGAGAGGAGGAGCTCAGGGGATGCTGGAGGCTGTGGTAACGGGGGCATT
GTTTGGTGGAGGTGCAGCGGGATTAGGATCGGCCCTGGCAGGAGGCACAA
GAGCGGATAGTCATCGTCGCATGCTGATGGGCTCCCTGGTGGGAGGGTTA
GGGGGAGGGATCTTGGGCTCTCAGTTCCAGCAAATGACGATGATCCAACA
GCAGGACGCTGTCGACAGAATGAGCTACGAGGACTTGCTCAATTTATTCG
GTCCTGGGCATGAGCCGCAGAAGGCGAGTGAGGTCGCGGTCAGCGCACTT
CCTGAGGTCACGGTGAGCAGCACGGAACTCGAGAGGATGCGGCGGGAAAG
CATGGGGAATGCGCGCGACTGCAGTGTGTGTATGGAAGAATTTGAGCTGG
GTGACGTCACTAGGCGCCTGCCCTGCTTGCACACGTATCACAAGGCGTGC
ATTGACCGGTGGCTACTTCAGTGCAATGCCATGTGCCCTATCTGCAAGGT
CCCCATTGCCCAGACATGA back to topCoding sequence (CDS) from alignment at chr11:369084..370502- >NO11G00980.1 ID=NO11G00980.1|Name=NO11G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=1419bp|location=Sequence derived from alignment at chr11:369084..370502- (Nannochloropsis oceanica) ATGGACTCGGACAACTATGACACATGTCCCACTTGCAGCACCAATTACCC TCCTGTCAACGCGGCCCTACATCAGGCCCGATGTCCAAGGCAGCACCAGC AGGCACCGCACCACCGTATGCATGTTGCGGCTTCCTCCGCTACCGCACCA TCGCGGGCTTCCCGAGAGCAGCAGAAGCAGCAGCAGCAAGAGCACGACCA CGAGGGAGAGGAGGAGCACGAGAAGGAGAAGGAGGGGCACGAGAAGGAGG AGGAGGGAGAGGAGAGGGAGGAAGCAACAACTATCGACCTGACGGGTAGC AGCCCCTTAAATTCAGGCAGGCCCACCCTCCCAAGCATCCATGCTCCGGC GGCCGCGGCAGCGATTGCGATGGCGGGAAACAGGAACCTTGACAGGGGAC GGGATGATGAGGTGGTATACGATAGCGAGGATGATCGCAGCAGTGATATG GCCGGTTCGGGGGAGGCGGCAGGCCGTCCAAAGGACGATGGGGTGGGCGG AGGTGGCAGGCTTAAGGGGGTATGCAACGAAGAGGATAACGAGGAGGAGG AAGACGGCGTTCAAATTCAGTGCGCCACTTGCACTTTTTTTAACGAACCA GACATGGACATCTGTCAGATGTGTATGGCACCGCTGACCAATCAGGCCGG TGGTGGCGGGGGCGGTGGCATGGAGGAACAGGAAAATGATGTGCGAGAAC TTAACGCGCACGCCCGATGGACTTGTCCATTGTGTACGTACGGCGGTAAT ACGAGAGGCAATTGGATTTGCCAAGCCTGTGAGGTGGGGCGGCCCCGACG TCAAGATATGCTTGGCTCGACGAACAATGACGGGTACGTAATGGTATCGC CCGACGCGCTGAGTCGGGGCAGCGGAGGGTGGGGGAGGCAAAGAGGCGGC GGGAGAGGAGGAGCTCAGGGGATGCTGGAGGCTGTGGTAACGGGGGCATT GTTTGGTGGAGGTGCAGCGGGATTAGGATCGGCCCTGGCAGGAGGCACAA GAGCGGATAGTCATCGTCGCATGCTGATGGGCTCCCTGGTGGGAGGGTTA GGGGGAGGGATCTTGGGCTCTCAGTTCCAGCAAATGACGATGATCCAACA GCAGGACGCTGTCGACAGAATGAGCTACGAGGACTTGCTCAATTTATTCG GTCCTGGGCATGAGCCGCAGAAGGCGAGTGAGGTCGCGGTCAGCGCACTT CCTGAGGTCACGGTGAGCAGCACGGAACTCGAGAGGATGCGGCGGGAAAG CATGGGGAATGCGCGCGACTGCAGTGTGTGTATGGAAGAATTTGAGCTGG GTGACGTCACTAGGCGCCTGCCCTGCTTGCACACGTATCACAAGGCGTGC ATTGACCGGTGGCTACTTCAGTGCAATGCCATGTGCCCTATCTGCAAGGT CCCCATTGCCCAGACATGA back to top
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