NO11G00970, NO11G00970 (gene) Nannochloropsis oceanica

Overview
NameNO11G00970
Unique NameNO11G00970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1718
Alignment locationchr11:367111..368828 +

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Properties
Property NameValue
DescriptionPhd zinc finger-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:367111..368828 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR019787Znf_PHD-finger
IPR001965Znf_PHD
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Homology
BLAST of NO11G00970 vs. NCBI_GenBank
Match: XP_005856290.1 (phd zinc finger-containing protein [Nannochloropsis gaditana CCMP526] >EKU20070.1 phd zinc finger-containing protein [Nannochloropsis gaditana CCMP526] >EWM25130.1 phd zinc finger-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 433.3 bits (1113), Expect = 9.000e-118
Identity = 218/427 (51.05%), Postives = 289/427 (67.68%), Query Frame = 0
Query:   33 EDADNKQNQDLAVAG--LFSTHLPPRAGCESTGPMGDRAKREDCCVICHQEEFDAQVNEIIYCDRCDLGFHQQCYGVPKVPDGDFFCEFCSVAKEASDRKKNAPAAVCELCRQRGGGLVKAWIVDPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXECVDADAVAAALRASPPSLSCPSALPAFVHKVCALAGWNRRPRRLVRFVAGTNAQVAILSRVLVAKYRYATANEDAAAAQWQSVDIAMCGICYSSVGLLIRCRHHDPESEFFKCSFYAHAACAFNAGQASLLLHDVRQSPLVQIWCATHKPGPSIERPGGEAVARCLGLLLHPPPAAVEEHQHQQWQDRSRRQPLLQHLLYERKRESYGRLGGYMDDKYSLLQQRLASS-----PSGAEGARLILCWTDRAKEIYACREPHPATPIV 453
            +D  + Q+Q+   +   + ++  P R+G  + GPMGDRAK+EDCCVIC Q EF +  NEI+YCD CDLGFHQQCYG+P+VP+GDFFC+FC++A++ S+  K   A +CELC Q+GGGL++ WIVD                                    C+     A A  +   SL  P A P FVHKVCALAGWN++P RLVRFVAGTNAQVA++SR +VA YR   A E+  A++WQ+ D   CGIC SSVGLL+RC HHDP+S  F+CSF AHAACAFNA QASLLLHDV++SPLV +WC+ H+P PS+ERPGG+AVA+CLG LL P  + +++H+    Q +    PLL+HL++ER++E YGRLGGY+DDK  LL++R++ +     P+ +   RLILC   RA+E++ACR+  PATP V
Sbjct:   19 DDKGDLQSQNFGASNQCVENSTQPTRSG--AMGPMGDRAKKEDCCVICFQGEFQS-TNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRI-APMCELCHQKGGGLLRIWIVD-----RGEGQYSDEDYVRDGSEDEDNDCGSTFEVAACIRPSDKANAFASISTSLPNPLAEPLFVHKVCALAGWNQQP-RLVRFVAGTNAQVAVVSRDIVATYRNLKAQEETMASRWQAADALSCGICDSSVGLLVRCCHHDPDSAVFRCSFSAHAACAFNAAQASLLLHDVQRSPLVTVWCSAHRPEPSVERPGGDAVAKCLGFLLPPLASPLDQHEQDGRQYQPCHTPLLRHLVHERRKEGYGRLGGYLDDKLRLLERRMSLAGALPVPTHSTDGRLILCAAGRAEEMFACRQRLPATPEV 435          
BLAST of NO11G00970 vs. NCBI_GenBank
Match: XP_003058521.1 (PHD zinc finger protein [Micromonas pusilla CCMP1545] >EEH56976.1 PHD zinc finger protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 75.1 bits (183), Expect = 6.300e-10
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 0
Query:   63 GPMGDRAKREDCCVICHQEEFDAQVNEIIYCDRCDLGFHQQCYGVPKVPDGDFFCEFCSVAKEASDRKKNAPAAVCELCRQRGGGL 149
            GPM +    + C V  + E +D   N I+YC++C +  HQ CYG+ K+P GD+FC+ C V  +A  +KKNA    C LC   GG L
Sbjct:  199 GPMTEEEMADACHVCWNGESYDD--NVILYCEKCLVPVHQACYGIKKIPKGDWFCKAC-VKTKADGKKKNAKPPACCLCPVPGGAL 281          
BLAST of NO11G00970 vs. NCBI_GenBank
Match: XP_005856317.1 (kinesin-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU20040.1 kinesin-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 72.8 bits (177), Expect = 3.100e-9
Identity = 44/125 (35.20%), Postives = 65/125 (52.00%), Query Frame = 0
Query:   27 QGEREMEDADNKQNQDLAVAGLFSTHLPPRAGCESTGPMGDRAKRED----CCVICHQEEFDAQVNEIIYCDRCDLGFHQQCYGVPKVPDGDFFCEFCSVAKEASDRKKNAPAAVCELCRQRGGG 148
            +G R+ E   NK  +++  A  +S  +  R    +   +   A  ED     C++C  +    + NEI++CD CD+  HQ CYG+P+VP+GDFFC+ C    E  DR    P A C LC +  GG
Sbjct:  367 RGLRDQEPDFNKHKEEVLPAS-WSLPVDGRPPPPAPEALAREAATEDVDDSICMVCF-DGSSTESNEIVFCDGCDMAAHQACYGLPEVPEGDFFCDKCLGLMEDPDR----PIA-CTLCPEVHGG 484          
BLAST of NO11G00970 vs. NCBI_GenBank
Match: CDM81653.1 (unnamed protein product [Triticum aestivum])

HSP 1 Score: 72.8 bits (177), Expect = 3.100e-9
Identity = 35/78 (44.87%), Postives = 44/78 (56.41%), Query Frame = 0
Query:   75 CVICHQEEFDAQVNEIIYCDRCDLGFHQQCYGVP---KVPDGDFFCEFCSVAKEASDRKKNAPA-AVCELCRQRGGGL 149
            C +C   + D Q + I++CD CDL  H  CYG P    +PDGD+FC  CSV   A+  KK  PA   C LC  RGG +
Sbjct:  589 CAVCRSTDGD-QSDPIVFCDGCDLMVHATCYGNPLAQSIPDGDWFCSLCSVKPAAAAGKKGKPARPPCRLCPARGGAM 665          
BLAST of NO11G00970 vs. NCBI_GenBank
Match: EWM24254.1 (bromodomain containing 1 [Nannochloropsis gaditana])

HSP 1 Score: 72.8 bits (177), Expect = 3.100e-9
Identity = 44/125 (35.20%), Postives = 65/125 (52.00%), Query Frame = 0
Query:   27 QGEREMEDADNKQNQDLAVAGLFSTHLPPRAGCESTGPMGDRAKRED----CCVICHQEEFDAQVNEIIYCDRCDLGFHQQCYGVPKVPDGDFFCEFCSVAKEASDRKKNAPAAVCELCRQRGGG 148
            +G R+ E   NK  +++  A  +S  +  R    +   +   A  ED     C++C  +    + NEI++CD CD+  HQ CYG+P+VP+GDFFC+ C    E  DR    P A C LC +  GG
Sbjct:  665 RGLRDQEPDFNKHKEEVLPAS-WSLPVDGRPPPPAPEALAREAATEDVDDSICMVCF-DGSSTESNEIVFCDGCDMAAHQACYGLPEVPEGDFFCDKCLGLMEDPDR----PIA-CTLCPEVHGG 782          
BLAST of NO11G00970 vs. NCBI_GenBank
Match: XP_012757193.1 (hypothetical protein SAMD00019534_024410 [Acytostelium subglobosum LB1] >GAM19266.1 hypothetical protein SAMD00019534_024410 [Acytostelium subglobosum LB1])

HSP 1 Score: 71.6 bits (174), Expect = 6.900e-9
Identity = 44/133 (33.08%), Postives = 60/133 (45.11%), Query Frame = 0
Query:   16 EDDFEDVIPRQQGEREMEDADNKQNQDLAVAGLFSTHLPPRAGCESTGPMGDRAKREDCCVICHQEEFDAQVNEIIYCDRCDLGFHQQCYGVPKVPDGDFFCEFCSVAKEASDRKKNAPAAVCELCRQRGGGL 149
            EDDFE+VI R     E E    KQ+    +   FS H                 + ED C +C     D   N+I+YCD CD+  HQ+CYG+  +P+G +FC+ C  A        N     C LC++  G L
Sbjct:  225 EDDFEEVIDR----LEKETFAYKQSIGSDMFPHFSAH-----------------EAEDVCSVCFDGTSD-DTNQIVYCDGCDIAVHQECYGIVLIPEGHWFCQKCESA--------NKDNITCALCKKSSGAL 327          
BLAST of NO11G00970 vs. NCBI_GenBank
Match: ORX71078.1 (hypothetical protein DL89DRAFT_274394 [Linderina pennispora])

HSP 1 Score: 71.6 bits (174), Expect = 6.900e-9
Identity = 32/76 (42.11%), Postives = 41/76 (53.95%), Query Frame = 0
Query:   75 CVICHQEEFDAQVNEIIYCDRCDLGFHQQCYGVPKVPDGDFFCEFCSVAKEASDRKKNAPAAVCELCRQRGGGLVK 151
            C IC +EE D   N I++CD C+L  HQ CYGVP +P+G + C  C +A +         A  C  C QRGG   K
Sbjct:   72 CAICGEEECD-NTNAIVFCDGCNLAVHQDCYGVPYIPEGQWLCRRCMLAPD--------KAVACMFCPQRGGAFKK 138          
BLAST of NO11G00970 vs. NCBI_GenBank
Match: XP_018734790.1 (Nto1p [Sugiyamaella lignohabitans] >ANB12313.1 Nto1p [Sugiyamaella lignohabitans])

HSP 1 Score: 71.2 bits (173), Expect = 9.000e-9
Identity = 36/91 (39.56%), Postives = 48/91 (52.75%), Query Frame = 0
Query:   57 AGCESTGPMGDRAKREDCCVICHQEEFDAQVNEIIYCDRCDLGFHQQCYGVPKVPDGDFFCEFCSVAKEASDRKKNAPAAVCELCRQRGGG 148
            AG +S  P  D  + E+ CVIC   E D   N I++CD CD+  HQ CYGVP +P+G + C  C+V++           A C  C  R GG
Sbjct:  443 AGKDSLLP-SDATETEEKCVICDDSECD-NSNAIVFCDGCDIAVHQDCYGVPFIPEGQWLCRQCTVSRRL--------RASCIFCPNRSGG 523          
BLAST of NO11G00970 vs. NCBI_GenBank
Match: XP_024663694.1 (NuA3 HAT complex component NTO1 [[Candida] sorbophila] >PRT53748.1 NuA3 HAT complex component NTO1 [[Candida] sorbophila])

HSP 1 Score: 70.9 bits (172), Expect = 1.200e-8
Identity = 33/78 (42.31%), Postives = 43/78 (55.13%), Query Frame = 0
Query:   75 CVICHQEEFDAQVNEIIYCDRCDLGFHQQCYGVPKVPDGDFFCEFCSVAKEASDRKKNAPAA--VCELCRQRGGGLVK 151
            CVIC++ + D  +N I+YCD CD+  HQ+CYGVP +P+G + C  C         K  APA    C  C  R G L K
Sbjct:  187 CVICNEADVD-NLNSIVYCDGCDIAVHQECYGVPFIPEGQWLCRRC---------KAQAPATSISCLFCPHRSGALTK 254          
BLAST of NO11G00970 vs. NCBI_GenBank
Match: OQS00722.1 (DEAD/DEAH box RNA helicase, partial [Thraustotheca clavata])

HSP 1 Score: 69.7 bits (169), Expect = 2.600e-8
Identity = 39/106 (36.79%), Postives = 54/106 (50.94%), Query Frame = 0
Query:   52 HLPPRAGCESTGPMGDRAKREDCCVICHQEEFDAQVNEIIYCDRCDLGFHQQCYGVPKVPDGDFFCEFCSVAKEASDRKKNAPAAVCELCRQRGGG----LVKAWI 154
            + P +A  +ST         EDC V      FD   N I++CD C++G HQ+CYGV +VP+G +FC+FCS  K+ +  K       C LC    G     L K W+
Sbjct: 1197 YTPDKAPSQSTD--------EDCQVCGETYSFDC--NPILFCDGCNIGVHQECYGVQEVPNGSWFCDFCSKVKKGTKPK-------CALCPIVKGAYKQTLCKQWV 1285          
The following BLAST results are available for this feature:
BLAST of NO11G00970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856290.19.000e-11851.05phd zinc finger-containing protein [Nannochloropsi... [more]
XP_003058521.16.300e-1041.86PHD zinc finger protein [Micromonas pusilla CCMP15... [more]
XP_005856317.13.100e-935.20kinesin-like protein, partial [Nannochloropsis gad... [more]
CDM81653.13.100e-944.87unnamed protein product [Triticum aestivum][more]
EWM24254.13.100e-935.20bromodomain containing 1 [Nannochloropsis gaditana... [more]
XP_012757193.16.900e-933.08hypothetical protein SAMD00019534_024410 [Acytoste... [more]
ORX71078.16.900e-942.11hypothetical protein DL89DRAFT_274394 [Linderina p... [more]
XP_018734790.19.000e-939.56Nto1p [Sugiyamaella lignohabitans] >ANB12313.1 Nto... [more]
XP_024663694.11.200e-842.31NuA3 HAT complex component NTO1 [[Candida] sorboph... [more]
OQS00722.12.600e-836.79DEAD/DEAH box RNA helicase, partial [Thraustotheca... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002176NSK002176Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00970.1NO11G00970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|49871gene_4971Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100016g45gene5376Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00970.1NO11G00970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00970 ID=NO11G00970|Name=NO11G00970|organism=Nannochloropsis oceanica|type=gene|length=1718bp
ATGGCGTCCACAATgtaagtgctgcggcttatcaaccttcatgccaagag
atgttaggcccctcttttgtccaatcctcggaatgaaattcagaaacctg
cgactatagttggaaagcaaaagctgtttccccccacatgttactcccat
acagtccgcatggtctgcaggccagggtcgtcatatacccccaaccaatg
ttagacaattttgcttgctgttttctgttgatcgatgcatttaacgtaaa
aataagctggagagacacagcctatcctttaccaattgaaacgccgcctt
tccaaacctcacccctttgtgatcctcatttctcacgtttcgaaatcggg
aacattgaaaactaattacatagCATCGAGGCGAAGTGGGACGGCATCGA
AGAGGAAGACGACTTTGAGGACGTTATCCCACGCCAACAAGGCGAACGGG
AAATGGAAGATGCGGATAATAAACAGAATCAAGACCTGGCCGTCGCCGGG
CTGTTTTCCACCCATTTACCGCCACGAGCAGGGTGCGAATCAACGGGCCC
CATGGGAGACCGTGCCAAGCGCGAAGATTGCTGCGTCATTTGCCACCAAG
AGGAATTTGATGCGCAGGTGAATGAAATAATTTATTGTGATAGATGTGAT
TTGGGGTTCCATCAACAATGCTATGGTGTGCCAAAGGTCCCGGATGGTGA
TTTCTTTTGTGAATTCTGCAGTGTTGCCAAGGAGGCTTCCGACAGGAAGA
AGAATGCACCCGCAGCTGTGTGTGAGCTCTGCCGTCAACGAGGTGGGGGA
CTTGTGAAGGCCTGGATTGTGGACCCCGATGTGGACGAGAATCTGGAGGA
GGAGGAGGAGGAGGACAACGACGACGACGAATGGAACGAGAACGAGGAGG
AGGAAGATGAAGACGACGATGTCATGAGTGAATGCGTGGATGCAGATGCT
GTTGCTGCTGCATTGCGTGCGTCACCGCCATCTTTGTCTTGCCCATCGGC
TTTGCCAGCCTTTGTGCACAAGGTCTGTGCTTTGGCAGGCTGGAATCGAC
GGCCACGCCGGCTGGTGCGGTTCGTGGCGGGTACGAACGCTCAAGTGGCC
ATTTTGTCACGTGTTTTGGTGGCAAAGTATCGGTATGCCACGGCCAATGA
AGATGCTGCCGCCGCCCAATGGCAGTCAGTGGACATTGCCATGTGTGGTA
TCTGCTATTCTTCTGTTGGCTTGCTTATTCGTTGTCGCCACCACGATCCT
GAGAGTGAGTTTTTCAAGTGCTCGTTCTATGCTCATGCCGCTTGTGCCTT
CAATGCTGGTCAGGCCTCGCTCCTTTTGCACGACGTTCGGCAATCCCCCT
TAGTTCAGATATGGTGTGCCACGCACAAGCCTGGACCTTCTATCGAAAGG
CCGGGGGGAGAGGCCGTCGCGCGGTGCCTGGGTCTTCTCTTGCACCCTCC
GCCCGCAGCCGTCGAGGAGCACCAGCACCAGCAGTGGCAAGATCGGTCCC
GGCGCCAGCCACTTTTGCAACACTTGCTTTACGAGCGGAAGAGAGAAAGC
TACGGGCGCTTGGGGGGTTATATGGACGACAAATATAGTTTGCTGCAGCA
GCGGCTAGCATCGTCGCCTTCGGGGGCTGAGGGGGCTCGCCTGATCCTTT
GTTGGACGGATCGGGCAAAGGAGATTTATGCATGCCGGGAGCCTCATCCT
GCCACGCCCATCGTCTGA
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protein sequence of NO11G00970.1

>NO11G00970.1-protein ID=NO11G00970.1-protein|Name=NO11G00970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MASTIIEAKWDGIEEEDDFEDVIPRQQGEREMEDADNKQNQDLAVAGLFS
THLPPRAGCESTGPMGDRAKREDCCVICHQEEFDAQVNEIIYCDRCDLGF
HQQCYGVPKVPDGDFFCEFCSVAKEASDRKKNAPAAVCELCRQRGGGLVK
AWIVDPDVDENLEEEEEEDNDDDEWNENEEEEDEDDDVMSECVDADAVAA
ALRASPPSLSCPSALPAFVHKVCALAGWNRRPRRLVRFVAGTNAQVAILS
RVLVAKYRYATANEDAAAAQWQSVDIAMCGICYSSVGLLIRCRHHDPESE
FFKCSFYAHAACAFNAGQASLLLHDVRQSPLVQIWCATHKPGPSIERPGG
EAVARCLGLLLHPPPAAVEEHQHQQWQDRSRRQPLLQHLLYERKRESYGR
LGGYMDDKYSLLQQRLASSPSGAEGARLILCWTDRAKEIYACREPHPATP
IV*
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Synonyms
Publications