NO11G00970.1, NO11G00970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00970.1
Unique NameNO11G00970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1359
Alignment locationchr11:367111..368828 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:367111..368828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G00970.1 vs.
Match: XP_005856290.1 (phd zinc finger-containing protein [Nannochloropsis gaditana CCMP526]; EKU20070.1 phd zinc finger-containing protein [Nannochloropsis gaditana CCMP526]; EWM25130.1 phd zinc finger-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 433.0 bits (1112), Expect = 1.200e-117
Identity = 226/430 (52.56%), Postives = 302/430 (70.23%), Query Frame = 0 
Query:   33 EDADNKQNQDLAVAG--LFSTHLPPRAGCESTGPMGDRAKREDCCVICHQEEFDAQVNEIIYCDRCDLGFHQQCYGVPKVPDGDFFCEFCSVAKEASDRKKNAPAAVCELCRQRGGGLVKAWIVDPDVDENLEEEEEEDNDDDEWNENEEEEDEDDDVMSE---CVDADAVAAALRASPPSLSCPSALPAFVHKVCALAGWNRRPRRLVRFVAGTNAQVAILSRVLVAKYRYATANEDAAAAQWQSVDIAMCGICYSSVGLLIRCRHHDPESEFFKCSFYAHAACAFNAGQASLLLHDVRQSPLVQIWCATHKPGPSIERPGGEAVARCLGLLLHPPPAAVEEHQHQQWQDRSRRQPLLQHLLYERKRESYGRLGGYMDDKYSLLQQRLASS-----PSGAEGARLILCWTDRAKEIYACREPHPATPIV 453
            +D  + Q+Q+   +   + ++  P R+G  + GPMGDRAK+EDCCVIC Q EF +  NEI+YCD CDLGFHQQCYG+P+VP+GDFFC+FC++A++ S+  K   A +CELC Q+GGGL++ WIVD          E + +D+D   +  E+ED D     E   C+     A A  +   SL  P A P FVHKVCALAGWN++PR LVRFVAGTNAQVA++SR +VA YR   A E+  A++WQ+ D   CGIC SSVGLL+RC HHDP+S  F+CSF AHAACAFNA QASLLLHDV++SPLV +WC+ H+P PS+ERPGG+AVA+CLG LL P  + +++H+    Q +    PLL+HL++ER++E YGRLGGY+DDK  LL++R++ +     P+ +   RLILC   RA+E++ACR+  PATP V
Sbjct:   19 DDKGDLQSQNFGASNQCVENSTQPTRSG--AMGPMGDRAKKEDCCVICFQGEFQS-TNEIVYCDACDLGFHQQCYGLPRVPEGDFFCDFCAIARDISNTDKRI-APMCELCHQKGGGLLRIWIVD--------RGEGQYSDEDYVRDGSEDEDNDCGSTFEVAACIRPSDKANAFASISTSLPNPLAEPLFVHKVCALAGWNQQPR-LVRFVAGTNAQVAVVSRDIVATYRNLKAQEETMASRWQAADALSCGICDSSVGLLVRCCHHDPDSAVFRCSFSAHAACAFNAAQASLLLHDVQRSPLVTVWCSAHRPEPSVERPGGDAVAKCLGFLLPPLASPLDQHEQDGRQYQPCHTPLLRHLVHERRKEGYGRLGGYLDDKLRLLERRMSLAGALPVPTHSTDGRLILCAAGRAEEMFACRQRLPATPEV 435
The following BLAST results are available for this feature:
BLAST of NO11G00970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856290.11.200e-11752.56phd zinc finger-containing protein [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00970NO11G00970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00970.1NO11G00970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00970.1.cds1NO11G00970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00970.1.cds2NO11G00970.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00970.1 ID=NO11G00970.1|Name=NO11G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp
ATGGCGTCCACAATCATCGAGGCGAAGTGGGACGGCATCGAAGAGGAAGA
CGACTTTGAGGACGTTATCCCACGCCAACAAGGCGAACGGGAAATGGAAG
ATGCGGATAATAAACAGAATCAAGACCTGGCCGTCGCCGGGCTGTTTTCC
ACCCATTTACCGCCACGAGCAGGGTGCGAATCAACGGGCCCCATGGGAGA
CCGTGCCAAGCGCGAAGATTGCTGCGTCATTTGCCACCAAGAGGAATTTG
ATGCGCAGGTGAATGAAATAATTTATTGTGATAGATGTGATTTGGGGTTC
CATCAACAATGCTATGGTGTGCCAAAGGTCCCGGATGGTGATTTCTTTTG
TGAATTCTGCAGTGTTGCCAAGGAGGCTTCCGACAGGAAGAAGAATGCAC
CCGCAGCTGTGTGTGAGCTCTGCCGTCAACGAGGTGGGGGACTTGTGAAG
GCCTGGATTGTGGACCCCGATGTGGACGAGAATCTGGAGGAGGAGGAGGA
GGAGGACAACGACGACGACGAATGGAACGAGAACGAGGAGGAGGAAGATG
AAGACGACGATGTCATGAGTGAATGCGTGGATGCAGATGCTGTTGCTGCT
GCATTGCGTGCGTCACCGCCATCTTTGTCTTGCCCATCGGCTTTGCCAGC
CTTTGTGCACAAGGTCTGTGCTTTGGCAGGCTGGAATCGACGGCCACGCC
GGCTGGTGCGGTTCGTGGCGGGTACGAACGCTCAAGTGGCCATTTTGTCA
CGTGTTTTGGTGGCAAAGTATCGGTATGCCACGGCCAATGAAGATGCTGC
CGCCGCCCAATGGCAGTCAGTGGACATTGCCATGTGTGGTATCTGCTATT
CTTCTGTTGGCTTGCTTATTCGTTGTCGCCACCACGATCCTGAGAGTGAG
TTTTTCAAGTGCTCGTTCTATGCTCATGCCGCTTGTGCCTTCAATGCTGG
TCAGGCCTCGCTCCTTTTGCACGACGTTCGGCAATCCCCCTTAGTTCAGA
TATGGTGTGCCACGCACAAGCCTGGACCTTCTATCGAAAGGCCGGGGGGA
GAGGCCGTCGCGCGGTGCCTGGGTCTTCTCTTGCACCCTCCGCCCGCAGC
CGTCGAGGAGCACCAGCACCAGCAGTGGCAAGATCGGTCCCGGCGCCAGC
CACTTTTGCAACACTTGCTTTACGAGCGGAAGAGAGAAAGCTACGGGCGC
TTGGGGGGTTATATGGACGACAAATATAGTTTGCTGCAGCAGCGGCTAGC
ATCGTCGCCTTCGGGGGCTGAGGGGGCTCGCCTGATCCTTTGTTGGACGG
ATCGGGCAAAGGAGATTTATGCATGCCGGGAGCCTCATCCTGCCACGCCC
ATCGTCTGA
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protein sequence of NO11G00970.1

>NO11G00970.1-protein ID=NO11G00970.1-protein|Name=NO11G00970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MASTIIEAKWDGIEEEDDFEDVIPRQQGEREMEDADNKQNQDLAVAGLFS
THLPPRAGCESTGPMGDRAKREDCCVICHQEEFDAQVNEIIYCDRCDLGF
HQQCYGVPKVPDGDFFCEFCSVAKEASDRKKNAPAAVCELCRQRGGGLVK
AWIVDPDVDENLEEEEEEDNDDDEWNENEEEEDEDDDVMSECVDADAVAA
ALRASPPSLSCPSALPAFVHKVCALAGWNRRPRRLVRFVAGTNAQVAILS
RVLVAKYRYATANEDAAAAQWQSVDIAMCGICYSSVGLLIRCRHHDPESE
FFKCSFYAHAACAFNAGQASLLLHDVRQSPLVQIWCATHKPGPSIERPGG
EAVARCLGLLLHPPPAAVEEHQHQQWQDRSRRQPLLQHLLYERKRESYGR
LGGYMDDKYSLLQQRLASSPSGAEGARLILCWTDRAKEIYACREPHPATP
IV*
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mRNA from alignment at chr11:367111..368828+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00970.1 ID=NO11G00970.1|Name=NO11G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1718bp|location=Sequence derived from alignment at chr11:367111..368828+ (Nannochloropsis oceanica)
ATGGCGTCCACAATGTAAGTGCTGCGGCTTATCAACCTTCATGCCAAGAG
ATGTTAGGCCCCTCTTTTGTCCAATCCTCGGAATGAAATTCAGAAACCTG
CGACTATAGTTGGAAAGCAAAAGCTGTTTCCCCCCACATGTTACTCCCAT
ACAGTCCGCATGGTCTGCAGGCCAGGGTCGTCATATACCCCCAACCAATG
TTAGACAATTTTGCTTGCTGTTTTCTGTTGATCGATGCATTTAACGTAAA
AATAAGCTGGAGAGACACAGCCTATCCTTTACCAATTGAAACGCCGCCTT
TCCAAACCTCACCCCTTTGTGATCCTCATTTCTCACGTTTCGAAATCGGG
AACATTGAAAACTAATTACATAGCATCGAGGCGAAGTGGGACGGCATCGA
AGAGGAAGACGACTTTGAGGACGTTATCCCACGCCAACAAGGCGAACGGG
AAATGGAAGATGCGGATAATAAACAGAATCAAGACCTGGCCGTCGCCGGG
CTGTTTTCCACCCATTTACCGCCACGAGCAGGGTGCGAATCAACGGGCCC
CATGGGAGACCGTGCCAAGCGCGAAGATTGCTGCGTCATTTGCCACCAAG
AGGAATTTGATGCGCAGGTGAATGAAATAATTTATTGTGATAGATGTGAT
TTGGGGTTCCATCAACAATGCTATGGTGTGCCAAAGGTCCCGGATGGTGA
TTTCTTTTGTGAATTCTGCAGTGTTGCCAAGGAGGCTTCCGACAGGAAGA
AGAATGCACCCGCAGCTGTGTGTGAGCTCTGCCGTCAACGAGGTGGGGGA
CTTGTGAAGGCCTGGATTGTGGACCCCGATGTGGACGAGAATCTGGAGGA
GGAGGAGGAGGAGGACAACGACGACGACGAATGGAACGAGAACGAGGAGG
AGGAAGATGAAGACGACGATGTCATGAGTGAATGCGTGGATGCAGATGCT
GTTGCTGCTGCATTGCGTGCGTCACCGCCATCTTTGTCTTGCCCATCGGC
TTTGCCAGCCTTTGTGCACAAGGTCTGTGCTTTGGCAGGCTGGAATCGAC
GGCCACGCCGGCTGGTGCGGTTCGTGGCGGGTACGAACGCTCAAGTGGCC
ATTTTGTCACGTGTTTTGGTGGCAAAGTATCGGTATGCCACGGCCAATGA
AGATGCTGCCGCCGCCCAATGGCAGTCAGTGGACATTGCCATGTGTGGTA
TCTGCTATTCTTCTGTTGGCTTGCTTATTCGTTGTCGCCACCACGATCCT
GAGAGTGAGTTTTTCAAGTGCTCGTTCTATGCTCATGCCGCTTGTGCCTT
CAATGCTGGTCAGGCCTCGCTCCTTTTGCACGACGTTCGGCAATCCCCCT
TAGTTCAGATATGGTGTGCCACGCACAAGCCTGGACCTTCTATCGAAAGG
CCGGGGGGAGAGGCCGTCGCGCGGTGCCTGGGTCTTCTCTTGCACCCTCC
GCCCGCAGCCGTCGAGGAGCACCAGCACCAGCAGTGGCAAGATCGGTCCC
GGCGCCAGCCACTTTTGCAACACTTGCTTTACGAGCGGAAGAGAGAAAGC
TACGGGCGCTTGGGGGGTTATATGGACGACAAATATAGTTTGCTGCAGCA
GCGGCTAGCATCGTCGCCTTCGGGGGCTGAGGGGGCTCGCCTGATCCTTT
GTTGGACGGATCGGGCAAAGGAGATTTATGCATGCCGGGAGCCTCATCCT
GCCACGCCCATCGTCTGA
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Coding sequence (CDS) from alignment at chr11:367111..368828+

>NO11G00970.1 ID=NO11G00970.1|Name=NO11G00970.1|organism=Nannochloropsis oceanica|type=CDS|length=1359bp|location=Sequence derived from alignment at chr11:367111..368828+ (Nannochloropsis oceanica)
ATGGCGTCCACAATCATCGAGGCGAAGTGGGACGGCATCGAAGAGGAAGA
CGACTTTGAGGACGTTATCCCACGCCAACAAGGCGAACGGGAAATGGAAG
ATGCGGATAATAAACAGAATCAAGACCTGGCCGTCGCCGGGCTGTTTTCC
ACCCATTTACCGCCACGAGCAGGGTGCGAATCAACGGGCCCCATGGGAGA
CCGTGCCAAGCGCGAAGATTGCTGCGTCATTTGCCACCAAGAGGAATTTG
ATGCGCAGGTGAATGAAATAATTTATTGTGATAGATGTGATTTGGGGTTC
CATCAACAATGCTATGGTGTGCCAAAGGTCCCGGATGGTGATTTCTTTTG
TGAATTCTGCAGTGTTGCCAAGGAGGCTTCCGACAGGAAGAAGAATGCAC
CCGCAGCTGTGTGTGAGCTCTGCCGTCAACGAGGTGGGGGACTTGTGAAG
GCCTGGATTGTGGACCCCGATGTGGACGAGAATCTGGAGGAGGAGGAGGA
GGAGGACAACGACGACGACGAATGGAACGAGAACGAGGAGGAGGAAGATG
AAGACGACGATGTCATGAGTGAATGCGTGGATGCAGATGCTGTTGCTGCT
GCATTGCGTGCGTCACCGCCATCTTTGTCTTGCCCATCGGCTTTGCCAGC
CTTTGTGCACAAGGTCTGTGCTTTGGCAGGCTGGAATCGACGGCCACGCC
GGCTGGTGCGGTTCGTGGCGGGTACGAACGCTCAAGTGGCCATTTTGTCA
CGTGTTTTGGTGGCAAAGTATCGGTATGCCACGGCCAATGAAGATGCTGC
CGCCGCCCAATGGCAGTCAGTGGACATTGCCATGTGTGGTATCTGCTATT
CTTCTGTTGGCTTGCTTATTCGTTGTCGCCACCACGATCCTGAGAGTGAG
TTTTTCAAGTGCTCGTTCTATGCTCATGCCGCTTGTGCCTTCAATGCTGG
TCAGGCCTCGCTCCTTTTGCACGACGTTCGGCAATCCCCCTTAGTTCAGA
TATGGTGTGCCACGCACAAGCCTGGACCTTCTATCGAAAGGCCGGGGGGA
GAGGCCGTCGCGCGGTGCCTGGGTCTTCTCTTGCACCCTCCGCCCGCAGC
CGTCGAGGAGCACCAGCACCAGCAGTGGCAAGATCGGTCCCGGCGCCAGC
CACTTTTGCAACACTTGCTTTACGAGCGGAAGAGAGAAAGCTACGGGCGC
TTGGGGGGTTATATGGACGACAAATATAGTTTGCTGCAGCAGCGGCTAGC
ATCGTCGCCTTCGGGGGCTGAGGGGGCTCGCCTGATCCTTTGTTGGACGG
ATCGGGCAAAGGAGATTTATGCATGCCGGGAGCCTCATCCTGCCACGCCC
ATCGTCTGA
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Synonyms
Publications