NO11G00960, NO11G00960 (gene) Nannochloropsis oceanica

Overview
NameNO11G00960
Unique NameNO11G00960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length648
Alignment locationchr11:365795..366442 -

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Properties
Property NameValue
Description40S ribosomal protein S8
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:365795..366442 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: INTERPRO
TermDefinition
IPR001047Ribosomal_S8e
IPR022309Ribosomal_S8e/biogenesis_NSA2
Homology
BLAST of NO11G00960 vs. NCBI_GenBank
Match: EWM25134.1 (40s ribosomal protein s8 [Nannochloropsis gaditana])

HSP 1 Score: 349.0 bits (894), Expect = 1.100e-92
Identity = 183/215 (85.12%), Postives = 192/215 (89.30%), Query Frame = 0
Query:    1 MGITRDSRHKRRHTGGKRPSYRKKRKFELGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETQAKKTRILDVVYNASNNELVRTKTLVKSAVVQIDATPFRQYYEQHYGQEVGSKKKRGAVAAAAKTTETEAVKKSNHALRKLAKRKGDLETHLEEQFASGRLLACITSRPGQSGRADGYILEGKELEFYQKQLAKKKKGQK 216
            MGI+RDSRHKRRHTGGKRPSYRKKRKFE+GRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSET A+KTRILDVVYNASNNELVRTKTLVKSA+VQIDA PFRQY+EQHYGQEVGS  K                 KS+H LRKLAKRKG+LE+HLEEQFASGRLLA I+SRPGQSGRADGYILEGKELEFYQKQLAKKKKGQK
Sbjct:    1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGS--KXXXXXXXXXXXXXXXXXKSSHVLRKLAKRKGELESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFYQKQLAKKKKGQK 213          
BLAST of NO11G00960 vs. NCBI_GenBank
Match: XP_005856295.1 (small subunit ribosomal protein S8e, partial [Nannochloropsis gaditana CCMP526] >EKU20075.1 small subunit ribosomal protein S8e, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 305.8 bits (782), Expect = 1.000e-79
Identity = 160/192 (83.33%), Postives = 169/192 (88.02%), Query Frame = 0
Query:    1 MGITRDSRHKRRHTGGKRPSYRKKRKFELGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETQAKKTRILDVVYNASNNELVRTKTLVKSAVVQIDATPFRQYYEQHYGQEVGSKKKRGAVAAAAKTTETEAVKKSNHALRKLAKRKGDLETHLEEQFASGRLLACITSRPGQSGRADG 193
            MGI+RDSRHKRRHTGGKRPSYRKKRKFE+GRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSET A+KTRILDVVYNASNNELVRTKTLVKSA+VQIDA PFRQY+EQHYGQEVGS  K                 KS+H LRKLAKRKG+LE+HLEEQFASGRLLA I+SRPGQSGRADG
Sbjct:    1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGS--KXXXXXXXXXXXXXXXXXKSSHVLRKLAKRKGELESHLEEQFASGRLLASISSRPGQSGRADG 190          
BLAST of NO11G00960 vs. NCBI_GenBank
Match: XP_009524162.1 (hypothetical protein PHYSODRAFT_285611 [Phytophthora sojae] >EGZ21445.1 hypothetical protein PHYSODRAFT_285611 [Phytophthora sojae])

HSP 1 Score: 273.1 bits (697), Expect = 7.500e-70
Identity = 152/213 (71.36%), Postives = 170/213 (79.81%), Query Frame = 0
Query:    1 MGITRDSRHKRRHTGGKRPSYRKKRKFELGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETQAKKTRILDVVYNASNNELVRTKTLVKSAVVQIDATPFRQYYEQHYGQEVGSKKKRGAVAAAAKTTETEAVKKSNHALRKLA--KRKGDLETHLEEQFASGRLLACITSRPGQSGRADGYILEGKELEFYQKQLAKKK 212
            MGI+RDSRHKRR TGGKR  YRKKRKFELGR  A TKL    G KRVH VR RGG+LKFRAL LETGNF+W +E  A+KTRILDVVYNASNNELVRTKTLVK AVV +DATPFRQ+YE HYG ++G KK        A+ TE E VKKS+H LRKLA  +R  +L+  L+EQ ASGRLLA I+SRPGQSGRADGYILEGKELEFYQ++LA KK
Sbjct:    1 MGISRDSRHKRRETGGKRKQYRKKRKFELGRQPANTKL----GGKRVHTVRVRGGHLKFRALHLETGNFSWGTEVCARKTRILDVVYNASNNELVRTKTLVKGAVVLVDATPFRQWYEAHYGVKIGVKKN-------AEKTEEEEVKKSDHVLRKLAARQRTRELDAKLDEQVASGRLLAVISSRPGQSGRADGYILEGKELEFYQRKLATKK 202          
BLAST of NO11G00960 vs. NCBI_GenBank
Match: CCA22399.1 (40S ribosomal protein S82 putative [Albugo laibachii Nc14])

HSP 1 Score: 271.6 bits (693), Expect = 2.200e-69
Identity = 148/213 (69.48%), Postives = 169/213 (79.34%), Query Frame = 0
Query:    1 MGITRDSRHKRRHTGGKRPSYRKKRKFELGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETQAKKTRILDVVYNASNNELVRTKTLVKSAVVQIDATPFRQYYEQHYGQEVGSKKKRGAVAAAAKTTETEAVKKSNHALRKLAKRKGD--LETHLEEQFASGRLLACITSRPGQSGRADGYILEGKELEFYQKQLAKKK 212
            MGI+RDSRHKRR TGGKR  YRKKRKFELGR  A TKL    G KRVH VR RGG+ KFRALRLETGNF+W SE  ++KTRILDVVYNASNNELVRTKTLVKSA+V IDATPFRQ+YE HYG ++G KK       A  T + E  KKS+H +RKLA+R+     +  L+EQF SGR+LAC++SRPGQSGRADGYILEGKELEFYQ++LA KK
Sbjct:    1 MGISRDSRHKRRDTGGKRKQYRKKRKFELGRQPANTKL----GGKRVHRVRVRGGHFKFRALRLETGNFSWGSEAVSRKTRILDVVYNASNNELVRTKTLVKSAIVSIDATPFRQWYETHYGVKIGQKKN------AETTEKVEQEKKSDHVMRKLAQRQRGRIFDPKLDEQFTSGRILACVSSRPGQSGRADGYILEGKELEFYQRKLATKK 203          
BLAST of NO11G00960 vs. NCBI_GenBank
Match: CBJ28525.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 270.0 bits (689), Expect = 6.300e-69
Identity = 147/213 (69.01%), Postives = 168/213 (78.87%), Query Frame = 0
Query:    1 MGITRDSRHKRRHTGGKRPSYRKKRKFELGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETQAKKTRILDVVYNASNNELVRTKTLVKSAVVQIDATPFRQYYEQHYGQEVGSKKKRGAVAAAAKTTETEAVKKSNHALRKLAKRKGD--LETHLEEQFASGRLLACITSRPGQSGRADGYILEGKELEFYQKQLAKKK 212
            MGI+RDSRHKRR TGG+R  YRKKRKFE+GRPAA TKL    G KRVH VR RGGN+K+RALRL++GNF+W +E   +KTRILDVVYNASNNELVRTKTLVK+A+V +DA PF+ +YE HYG  +G KK +      A   E EAV KS+H  RKLAKR+ D  L T L+EQ ASGR LACI+SRPGQSGR DGYILEGKELEFYQK LAKKK
Sbjct:    1 MGISRDSRHKRRETGGRRSKYRKKRKFEMGRPAANTKL----GHKRVHPVRCRGGNMKYRALRLDSGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVVIGLKKGK-----KAAPVEEEAVAKSDHVKRKLAKRQTDRTLSTLLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKK 204          
BLAST of NO11G00960 vs. NCBI_GenBank
Match: GAX92731.1 (40S ribosomal protein S8 [Pythium insidiosum])

HSP 1 Score: 270.0 bits (689), Expect = 6.300e-69
Identity = 148/213 (69.48%), Postives = 168/213 (78.87%), Query Frame = 0
Query:    1 MGITRDSRHKRRHTGGKRPSYRKKRKFELGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETQAKKTRILDVVYNASNNELVRTKTLVKSAVVQIDATPFRQYYEQHYGQEVGSKKKRGAVAAAAKTTETEAVKKSNHALRKLAKRKGD--LETHLEEQFASGRLLACITSRPGQSGRADGYILEGKELEFYQKQLAKKK 212
            MGI+RDSRHKRR TGGKR  YRKKRKFELGR  A TKL    G KRVH VR RGGN KFRALRL+TGNF+W +E  ++KTRILDVVYNASNNELVRTKT+VK  +V IDATPFRQ+YE HYG ++G KK       A +T + EA KKS+H  RK+A R+ D  L+  L+EQFASGRLLA I SRPGQSGRADGYILEGKELEFYQ++LA KK
Sbjct:    1 MGISRDSRHKRRETGGKRKQYRKKRKFELGRQPANTKL----GHKRVHTVRVRGGNTKFRALRLDTGNFSWGTEVLSRKTRILDVVYNASNNELVRTKTIVKGCIVSIDATPFRQWYEAHYGAKIGQKKN------AVETADDEA-KKSSHVQRKIANRQRDRVLDVKLDEQFASGRLLAAIASRPGQSGRADGYILEGKELEFYQRKLATKK 202          
BLAST of NO11G00960 vs. NCBI_GenBank
Match: OWZ16065.1 (40S ribosomal protein S8-2 [Phytophthora megakarya])

HSP 1 Score: 269.6 bits (688), Expect = 8.200e-69
Identity = 149/213 (69.95%), Postives = 169/213 (79.34%), Query Frame = 0
Query:    1 MGITRDSRHKRRHTGGKRPSYRKKRKFELGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETQAKKTRILDVVYNASNNELVRTKTLVKSAVVQIDATPFRQYYEQHYGQEVGSKKKRGAVAAAAKTTETEAVKKSNHALRKLAKRK--GDLETHLEEQFASGRLLACITSRPGQSGRADGYILEGKELEFYQKQLAKKK 212
            +GI+RDSRHKRR TGGKR  YRKKRKFELGR  A TKL    G KRVH VR RGG+LKFRAL LETGNF+W +E  A+KTRILDVVYNASNNELVRTKTLVK AVV +DATPFRQ+YE HYG ++G KK        A+  E E VKKS+H LRKLA R+   +L+T ++EQ +SGRLLA I SRPGQSGRADGYILEGKELEFYQ++LA KK
Sbjct:   12 VGISRDSRHKRRETGGKRKQYRKKRKFELGRQPAATKL----GGKRVHTVRTRGGHLKFRALHLETGNFSWGTEVCARKTRILDVVYNASNNELVRTKTLVKGAVVLVDATPFRQWYEAHYGVKIGVKKN-------AEKQEEEDVKKSSHVLRKLANRQRTRELDTKIDEQVSSGRLLAVIASRPGQSGRADGYILEGKELEFYQRKLATKK 213          
BLAST of NO11G00960 vs. NCBI_GenBank
Match: XP_008905363.1 (40S ribosomal protein S8 [Phytophthora parasitica INRA-310] >ETI47179.1 40S ribosomal protein S8 [Phytophthora parasitica P1569] >ETK87132.1 40S ribosomal protein S8 [Phytophthora parasitica] >ETL93691.1 40S ribosomal protein S8 [Phytophthora parasitica] >ETM46929.1 40S ribosomal protein S8 [Phytophthora parasitica] >ETN09530.1 40S ribosomal protein S8 [Phytophthora parasitica INRA-310] >ETO75860.1 40S ribosomal protein S8 [Phytophthora parasitica P1976] >KUF89735.1 40S ribosomal protein S8 [Phytophthora nicotianae])

HSP 1 Score: 265.8 bits (678), Expect = 1.200e-67
Identity = 148/213 (69.48%), Postives = 167/213 (78.40%), Query Frame = 0
Query:    1 MGITRDSRHKRRHTGGKRPSYRKKRKFELGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETQAKKTRILDVVYNASNNELVRTKTLVKSAVVQIDATPFRQYYEQHYGQEVGSKKKRGAVAAAAKTTETEAVKKSNHALRKLAKRKGD--LETHLEEQFASGRLLACITSRPGQSGRADGYILEGKELEFYQKQLAKKK 212
            MGI+RDSRHKRR TGGKR  +RKKRKFELGR  A TKL    G KRVH VR RGG+LKFRALRLETGNF+W +E  A+KTRILDVVYNASNNELVRTKTLVK AVV +DATPFRQ+YE HYG ++G KK        A   E E VKKS+H LRKLA R+    L+  ++EQ  SGRLLA I+SRPGQSGRADGY+LEGKELEFYQ++LA KK
Sbjct:    1 MGISRDSRHKRRETGGKRKQFRKKRKFELGRQPANTKL----GGKRVHAVRVRGGHLKFRALRLETGNFSWGTEVCARKTRILDVVYNASNNELVRTKTLVKGAVVLVDATPFRQWYEAHYGVKIGVKKN-------APQHEEEEVKKSDHVLRKLANRQRTRVLDPKIDEQVTSGRLLAVISSRPGQSGRADGYLLEGKELEFYQRKLATKK 202          
BLAST of NO11G00960 vs. NCBI_GenBank
Match: EPZ31448.1 (40S ribosomal protein S8-B [Rozella allomycis CSF55])

HSP 1 Score: 265.4 bits (677), Expect = 1.600e-67
Identity = 143/213 (67.14%), Postives = 166/213 (77.93%), Query Frame = 0
Query:    1 MGITRDSRHKRRHTGGKRPSYRKKRKFELGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETQAKKTRILDVVYNASNNELVRTKTLVKSAVVQIDATPFRQYYEQHYGQEVGSKKKRGAVAAAAKTTETEAVKKSNHALRKLAKRKGD--LETHLEEQFASGRLLACITSRPGQSGRADGYILEGKELEFYQKQLAKKK 212
            MGI+RDSRHKR HTG KR  YRKKRKFELGR  A TKL    G KR+H VR RGGN KFRA+RL+TGNF+W SE   +KTRI+DVVYNASNNELVRTKTLVKSA+VQIDATPFRQ+YE HYG  +G KK    +A AA T   +A KKSNH  RK+  RK D  ++  L++QF++GRL ACI+SRPGQSGR DGYILEGKELEFY K++  +K
Sbjct:    1 MGISRDSRHKRSHTGAKRAQYRKKRKFELGRQPANTKL----GAKRIHPVRVRGGNTKFRAMRLDTGNFSWGSEAITRKTRIIDVVYNASNNELVRTKTLVKSAIVQIDATPFRQWYEAHYGSLLGKKK----LAKAASTEAGDAEKKSNHVQRKIESRKKDAHVDQALDDQFSTGRLYACISSRPGQSGRCDGYILEGKELEFYVKKIKARK 205          
BLAST of NO11G00960 vs. NCBI_GenBank
Match: CCI48864.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 265.4 bits (677), Expect = 1.600e-67
Identity = 145/213 (68.08%), Postives = 167/213 (78.40%), Query Frame = 0
Query:    1 MGITRDSRHKRRHTGGKRPSYRKKRKFELGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETQAKKTRILDVVYNASNNELVRTKTLVKSAVVQIDATPFRQYYEQHYGQEVGSKKKRGAVAAAAKTTETEAVKKSNHALRKLAKRKGD--LETHLEEQFASGRLLACITSRPGQSGRADGYILEGKELEFYQKQLAKKK 212
            MGI+RDSRHKRR TGGKR  +RKKRKFELGR  A TKL    G KRVH VR RGG+ KFRALRLETGNF+W SE  ++KTRILDVVYNASNNELVRTKTLVKSAVV IDATPFR +YE HYG ++G KK          T + E  KKS+H +RKLA+R+     +  L++QF SGR+LAC++SRPGQSGRADGYILEGKELEFYQ++LA KK
Sbjct:    1 MGISRDSRHKRRETGGKRKQFRKKRKFELGRQPANTKL----GGKRVHRVRVRGGHFKFRALRLETGNFSWGSEAVSRKTRILDVVYNASNNELVRTKTLVKSAVVSIDATPFRHWYETHYGVKIGVKKN------TESTEKVEQEKKSDHVMRKLAQRQRGRIFDPKLDDQFMSGRILACVSSRPGQSGRADGYILEGKELEFYQRKLATKK 203          
The following BLAST results are available for this feature:
BLAST of NO11G00960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM25134.11.100e-9285.1240s ribosomal protein s8 [Nannochloropsis gaditana... [more]
XP_005856295.11.000e-7983.33small subunit ribosomal protein S8e, partial [Nann... [more]
XP_009524162.17.500e-7071.36hypothetical protein PHYSODRAFT_285611 [Phytophtho... [more]
CCA22399.12.200e-6969.4840S ribosomal protein S82 putative [Albugo laibach... [more]
CBJ28525.16.300e-6969.01conserved unknown protein [Ectocarpus siliculosus][more]
GAX92731.16.300e-6969.4840S ribosomal protein S8 [Pythium insidiosum][more]
OWZ16065.18.200e-6969.9540S ribosomal protein S8-2 [Phytophthora megakarya... [more]
XP_008905363.11.200e-6769.4840S ribosomal protein S8 [Phytophthora parasitica ... [more]
EPZ31448.11.600e-6767.1440S ribosomal protein S8-B [Rozella allomycis CSF5... [more]
CCI48864.11.600e-6768.08unnamed protein product [Albugo candida][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002177NSK002177Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00960.1NO11G00960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590973gene_4970Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100016g46gene5375Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00960.1NO11G00960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00960 ID=NO11G00960|Name=NO11G00960|organism=Nannochloropsis oceanica|type=gene|length=648bp
ATGGGTATTACTCGTGACTCGCGTCACAAGCGCCGCCACACGGGCGGAAA
GCGGCCCTCCTATCGCAAGAAGCGTAAGTTTGAGCTTGGCAGGCCGGCGG
CCATGACCAAATTGGTGCTGGGTCACGGTGAGAAACGTGTGCACGTGGTG
CGGGGACGAGGTGGGAATCTTAAGTTCCGCGCACTGCGCCTGGAAACCGG
CAATTTTGCGTGGCGCTCCGAGACCCAGGCGAAGAAGACCCGCATCCTAG
ATGTAGTTTACAACGCCTCCAACAACGAGCTGGTCCGCACTAAGACACTT
GTCAAGAGCGCCGTCGTGCAGATCGACGCCACGCCCTTCCGACAGTACTA
TGAGCAGCACTATGGCCAGGAGGTGGGCAGCAAGAAAAAGAGGGGAGCGG
TGGCCGCGGCCGCCAAGACCACCGAGACAGAGGCCGTCAAGAAGTCTAAC
CACGCGCTTCGTAAACTGGCCAAGCGCAAGGGGGACCTTGAGACGCATTT
GGAGGAGCAGTTTGCATCCGGACGCTTGTTGGCCTGCATCACCTCCCGCC
CAGGTCAGAGCGGCCGCGCCGACGGCTACATCTTGGAGGGCAAGGAGCTG
GAGTTCTACCAGAAGCAGCTGGCCAAGAAGAAGAAGGGCCAGAAGTAA
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protein sequence of NO11G00960.1

>NO11G00960.1-protein ID=NO11G00960.1-protein|Name=NO11G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MGITRDSRHKRRHTGGKRPSYRKKRKFELGRPAAMTKLVLGHGEKRVHVV
RGRGGNLKFRALRLETGNFAWRSETQAKKTRILDVVYNASNNELVRTKTL
VKSAVVQIDATPFRQYYEQHYGQEVGSKKKRGAVAAAAKTTETEAVKKSN
HALRKLAKRKGDLETHLEEQFASGRLLACITSRPGQSGRADGYILEGKEL
EFYQKQLAKKKKGQK*
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Synonyms
Publications