NO11G00960.1, NO11G00960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00960.1
Unique NameNO11G00960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length648
Alignment locationchr11:365795..366442 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:365795..366442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G00960.1 vs.
Match: EWM25134.1 (40s ribosomal protein s8 [Nannochloropsis gaditana])

HSP 1 Score: 369.8 bits (948), Expect = 5.900e-99
Identity = 191/215 (88.84%), Postives = 202/215 (93.95%), Query Frame = 0
Query:    1 MGITRDSRHKRRHTGGKRPSYRKKRKFELGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETQAKKTRILDVVYNASNNELVRTKTLVKSAVVQIDATPFRQYYEQHYGQEVGSKKKRGAVAAAAKTTETEAVKKSNHALRKLAKRKGDLETHLEEQFASGRLLACITSRPGQSGRADGYILEGKELEFYQKQLAKKKKGQK 216
            MGI+RDSRHKRRHTGGKRPSYRKKRKFE+GRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSET A+KTRILDVVYNASNNELVRTKTLVKSA+VQIDA PFRQY+EQHYGQEVGSKKK+ A A A   +E E  KKS+H LRKLAKRKG+LE+HLEEQFASGRLLA I+SRPGQSGRADGYILEGKELEFYQKQLAKKKKGQK
Sbjct:    1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATA--KSEAEPEKKSSHVLRKLAKRKGELESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFYQKQLAKKKKGQK 213          
The following BLAST results are available for this feature:
BLAST of NO11G00960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25134.15.900e-9988.8440s ribosomal protein s8 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00960NO11G00960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00960.1NO11G00960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00960.1.cds1NO11G00960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00960.1 ID=NO11G00960.1|Name=NO11G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=648bp
ATGGGTATTACTCGTGACTCGCGTCACAAGCGCCGCCACACGGGCGGAAA
GCGGCCCTCCTATCGCAAGAAGCGTAAGTTTGAGCTTGGCAGGCCGGCGG
CCATGACCAAATTGGTGCTGGGTCACGGTGAGAAACGTGTGCACGTGGTG
CGGGGACGAGGTGGGAATCTTAAGTTCCGCGCACTGCGCCTGGAAACCGG
CAATTTTGCGTGGCGCTCCGAGACCCAGGCGAAGAAGACCCGCATCCTAG
ATGTAGTTTACAACGCCTCCAACAACGAGCTGGTCCGCACTAAGACACTT
GTCAAGAGCGCCGTCGTGCAGATCGACGCCACGCCCTTCCGACAGTACTA
TGAGCAGCACTATGGCCAGGAGGTGGGCAGCAAGAAAAAGAGGGGAGCGG
TGGCCGCGGCCGCCAAGACCACCGAGACAGAGGCCGTCAAGAAGTCTAAC
CACGCGCTTCGTAAACTGGCCAAGCGCAAGGGGGACCTTGAGACGCATTT
GGAGGAGCAGTTTGCATCCGGACGCTTGTTGGCCTGCATCACCTCCCGCC
CAGGTCAGAGCGGCCGCGCCGACGGCTACATCTTGGAGGGCAAGGAGCTG
GAGTTCTACCAGAAGCAGCTGGCCAAGAAGAAGAAGGGCCAGAAGTAA
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protein sequence of NO11G00960.1

>NO11G00960.1-protein ID=NO11G00960.1-protein|Name=NO11G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MGITRDSRHKRRHTGGKRPSYRKKRKFELGRPAAMTKLVLGHGEKRVHVV
RGRGGNLKFRALRLETGNFAWRSETQAKKTRILDVVYNASNNELVRTKTL
VKSAVVQIDATPFRQYYEQHYGQEVGSKKKRGAVAAAAKTTETEAVKKSN
HALRKLAKRKGDLETHLEEQFASGRLLACITSRPGQSGRADGYILEGKEL
EFYQKQLAKKKKGQK*
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mRNA from alignment at chr11:365795..366442-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00960.1 ID=NO11G00960.1|Name=NO11G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=648bp|location=Sequence derived from alignment at chr11:365795..366442- (Nannochloropsis oceanica)
ATGGGTATTACTCGTGACTCGCGTCACAAGCGCCGCCACACGGGCGGAAA GCGGCCCTCCTATCGCAAGAAGCGTAAGTTTGAGCTTGGCAGGCCGGCGG CCATGACCAAATTGGTGCTGGGTCACGGTGAGAAACGTGTGCACGTGGTG CGGGGACGAGGTGGGAATCTTAAGTTCCGCGCACTGCGCCTGGAAACCGG CAATTTTGCGTGGCGCTCCGAGACCCAGGCGAAGAAGACCCGCATCCTAG ATGTAGTTTACAACGCCTCCAACAACGAGCTGGTCCGCACTAAGACACTT GTCAAGAGCGCCGTCGTGCAGATCGACGCCACGCCCTTCCGACAGTACTA TGAGCAGCACTATGGCCAGGAGGTGGGCAGCAAGAAAAAGAGGGGAGCGG TGGCCGCGGCCGCCAAGACCACCGAGACAGAGGCCGTCAAGAAGTCTAAC CACGCGCTTCGTAAACTGGCCAAGCGCAAGGGGGACCTTGAGACGCATTT GGAGGAGCAGTTTGCATCCGGACGCTTGTTGGCCTGCATCACCTCCCGCC CAGGTCAGAGCGGCCGCGCCGACGGCTACATCTTGGAGGGCAAGGAGCTG GAGTTCTACCAGAAGCAGCTGGCCAAGAAGAAGAAGGGCCAGAAGTAA
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Coding sequence (CDS) from alignment at chr11:365795..366442-

>NO11G00960.1 ID=NO11G00960.1|Name=NO11G00960.1|organism=Nannochloropsis oceanica|type=CDS|length=648bp|location=Sequence derived from alignment at chr11:365795..366442- (Nannochloropsis oceanica)
ATGGGTATTACTCGTGACTCGCGTCACAAGCGCCGCCACACGGGCGGAAA
GCGGCCCTCCTATCGCAAGAAGCGTAAGTTTGAGCTTGGCAGGCCGGCGG
CCATGACCAAATTGGTGCTGGGTCACGGTGAGAAACGTGTGCACGTGGTG
CGGGGACGAGGTGGGAATCTTAAGTTCCGCGCACTGCGCCTGGAAACCGG
CAATTTTGCGTGGCGCTCCGAGACCCAGGCGAAGAAGACCCGCATCCTAG
ATGTAGTTTACAACGCCTCCAACAACGAGCTGGTCCGCACTAAGACACTT
GTCAAGAGCGCCGTCGTGCAGATCGACGCCACGCCCTTCCGACAGTACTA
TGAGCAGCACTATGGCCAGGAGGTGGGCAGCAAGAAAAAGAGGGGAGCGG
TGGCCGCGGCCGCCAAGACCACCGAGACAGAGGCCGTCAAGAAGTCTAAC
CACGCGCTTCGTAAACTGGCCAAGCGCAAGGGGGACCTTGAGACGCATTT
GGAGGAGCAGTTTGCATCCGGACGCTTGTTGGCCTGCATCACCTCCCGCC
CAGGTCAGAGCGGCCGCGCCGACGGCTACATCTTGGAGGGCAAGGAGCTG
GAGTTCTACCAGAAGCAGCTGGCCAAGAAGAAGAAGGGCCAGAAGTAA
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Synonyms
Publications