NO11G00570, NO11G00570 (gene) Nannochloropsis oceanica

Overview
NameNO11G00570
Unique NameNO11G00570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1521
Alignment locationchr11:246549..248069 +

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:246549..248069 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO11G00570 vs. NCBI_GenBank
Match: EWM25111.1 (ankyrin [Nannochloropsis gaditana])

HSP 1 Score: 159.1 bits (401), Expect = 3.700e-35
Identity = 151/254 (59.45%), Postives = 173/254 (68.11%), Query Frame = 0 
Query:  256 GDRSGVHTNECRDSLGRSALAVAAMQGDVASVEVLMDGGYWVGGEDVHR-----LTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNLKTGSVLAPPHYEAKTLHQTPLHLALRPSLTLSPELRLQIVETLLGFGASVCIEDVNDDTAVHAAARLGDARVLWSVLVHAIAEEKXXXXXXXXXXXXXXXXXXXRRNKKEETPLQCLPWASWCLVPLFVMAGAW 505
            G R  +   ECRD+LGRSALA+AAMQGD  SV+VL++ GY VG EDVHR       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             +L TG VLAPPHYEA++LHQTPLHL+LRPS  L   +R ++V TLL  GASV  +D+N DTA+HAAARLG+A +LW +LV A  EE                      N K ETP++CL W    L  LF+MAGAW
Sbjct:  158 GGREVLRAVECRDALGRSALAIAAMQGDEESVQVLIEDGYQVGAEDVHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREECEGEAPLEADLPTGPVLAPPHYEAQSLHQTPLHLSLRPSPALDSAVRQELVLTLLAHGASVSAQDLNGDTALHAAARLGEAPLLWLLLVGA-TEEGQDRGGRSVEREAERKKAWRITNAKGETPVECLAWWKLYLSLLFLMAGAW 410
The following BLAST results are available for this feature:
BLAST of NO11G00570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25111.13.700e-3559.45ankyrin [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL115nonsL115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR067ncniR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR010ncniR010Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002213NSK002213Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00570.1NO11G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555779gene_4921Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100016g84gene5339Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00570.1NO11G00570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00570 ID=NO11G00570|Name=NO11G00570|organism=Nannochloropsis oceanica|type=gene|length=1521bp
ATGTGCTTGCCGCGCCAATTAACGGCAGGGAATGGTGGCGCCTATGTGTG
CAGATGGACTGATAAAAATTACCCATCACACACCCCAAAAGCACAGAAAA
CAAATAAAGAAGCTGCTGCTTCTCCACGTTCCCCCTTATCGGCAAAAACA
CCTCATCAACGACAACTCCAACAGAACCGCCACCAGCATCAGCACCACCA
CGCGTGCACTCCCCCGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAATTATCGTCCCTCTATGCCACTTCTCGAGTA
ATGATAAGAAAGCTGGCGACCCTCTCCCCTCTCGTCCCTTGCATTTCCTC
CTCTCCCTCCTCCTCATCTAATGCCGCTCCGAGCACTGCCTCCTCCCTCC
CCCTCCTCCTCTTCCTCCTCCTCGGCCTTGGTGGGGGCATCACCACAGCC
GTTTCTCCCTCCCTCGCTCTCTCTCCCAAACCGCCAATACCCAGCGAGGA
CGACTACAAGGACTCCTCCTCTCTCCCTCCCTCGCCCTCCCACCTTCGGC
AACTGCAGCATGACCGGGCCTGCGCTCTCCTCCTCCAGCATCTTTTCCGT
TTCTCCCTCCCTCCCTCCCTCTCTTCCTCCTCTTCCTCGTCTTCCTCCCG
TCGCTTCCACCGTGGTGCACGTGGGAACAACGCACCGATCATCCGCCAGT
ACCTGCAAAGAACTCTCCCTCTCTCCCTCCCTTCCTCCCACCAAAAAACA
GGAGGGGAAGGGGAGGGAGACAGGTCCGGAGTGCACACGAACGAGTGTCG
AGATTCCCTAGGGCGTTCGGCTTTGGCTGTGGCTGCCATGCAGGGAGACG
TGGCCAGCGTCGAGGTCTTGATGGATGGAGGGTACTGGGTCGGGGGGGAA
GATGTCCACCGACTCACCCCCCTTTCCTACGCGGCATGGAAGGGGCATGT
GAAGGTGGTGAGGGCGCTACTGCAGGGAGGGGCGGAGGGGGGACACATGG
ATGATTTTGGGGTGAGTCCTTTGCACAAAGCAGTATCATTTGGGCACCCG
GAAGTGGTGGTGGCACTGTTGGAGGGAGGGACGGACGGAGGGTCGGTGGA
TGTGAATTTGAAGACGGGTTCAGTGTTGGCACCACCGCACTATGAAGCCA
AGACGTTGCATCAGACGCCCCTCCACCTTGCCCTCCGTCCCTCCCTCACC
CTTTCTCCGGAGTTGCGGCTGCAGATTGTGGAGACGCTGTTAGGTTTTGG
TGCGAGTGTGTGTATAGAGGATGTGAATGATGATACAGCAGTTCATGCAG
CTGCTCGCCTGGGTGACGCCCGGGTGTTGTGGTCGGTTCTTGTGCATGCC
ATCGCCGAAGAGAAGAGGAGGGAAAGAGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGCGAAAAGGTATGGAAGAGGAGGAATAAGAAAGAAGAGACGCCGT
TGCAGTGTTTGCCGTGGGCGAGTTGGTGCTTGGTGCCTTTGTTTGTCATG
GCGGGGGCATGGGGGGGATAA
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protein sequence of NO11G00570.1

>NO11G00570.1-protein ID=NO11G00570.1-protein|Name=NO11G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=507bp
MCLPRQLTAGNGGAYVCRWTDKNYPSHTPKAQKTNKEAAASPRSPLSAKT
PHQRQLQQNRHQHQHHHACTPPKQQQQQQQQQQQQQQQQQLSSLYATSRV
MIRKLATLSPLVPCISSSPSSSSNAAPSTASSLPLLLFLLLGLGGGITTA
VSPSLALSPKPPIPSEDDYKDSSSLPPSPSHLRQLQHDRACALLLQHLFR
FSLPPSLSSSSSSSSSRRFHRGARGNNAPIIRQYLQRTLPLSLPSSHQKT
GGEGEGDRSGVHTNECRDSLGRSALAVAAMQGDVASVEVLMDGGYWVGGE
DVHRLTPLSYAAWKGHVKVVRALLQGGAEGGHMDDFGVSPLHKAVSFGHP
EVVVALLEGGTDGGSVDVNLKTGSVLAPPHYEAKTLHQTPLHLALRPSLT
LSPELRLQIVETLLGFGASVCIEDVNDDTAVHAAARLGDARVLWSVLVHA
IAEEKRREREGGREGGREGEKVWKRRNKKEETPLQCLPWASWCLVPLFVM
AGAWGG*
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Synonyms
Publications