NO11G00570.1, NO11G00570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00570.1
Unique NameNO11G00570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1521
Alignment locationchr11:246549..248069 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:246549..248069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G00570.1 vs.
Match: EWM25111.1 (ankyrin [Nannochloropsis gaditana])

HSP 1 Score: 338.2 bits (866), Expect = 4.400e-89
Identity = 214/403 (53.10%), Postives = 261/403 (64.76%), Query Frame = 0 
Query:  111 LVPCISSSPSSSSNA-APSTASS-LPLLLFLLLGLGGGITTAVSPSLALSPKPPIPSEDDYKDSSSLPPSPSHLRQLQHDRACALLLQHLFRFSLPPSLSSSSSSSSSRRFHRGARGNNAPIIRQYLQRTLPLSLPSSHQKTGGEGEGDRSGVHTNECRDSLGRSALAVAAMQGDVASVEVLMDGGYWVGGEDVHRLTPLSYAAWKGHVKVVRALLQGGAEGGHMDDFGVSPLHKAVSFGHPEVVVALLEGG-----TDGGSVDVNLKTGSVLAPPHYEAKTLHQTPLHLALRPSLTLSPELRLQIVETLLGFGASVCIEDVNDDTAVHAAARLGDARVLWSVLVHAIAEEKRREREGGREGGREGE--KVWKRRNKKEETPLQCLPWASWCLVPLFVMAGAW 505
            LV  + S  S + +A +P  A S LP L+  LLGLG G  + +SPS   S  P + S++D     SL  SP   R+ QHD+ACA LLQHL RF  PPS +SS  SSS RR     R   A   R+YLQ+TLP     S ++ GG     R  +   ECRD+LGRSALA+AAMQGD  SV+VL++ GY VG EDVHRLTPLSYAAWKGH  VV  LL+GGA+GGH DDFGV+PLHKA +FGHP VV  LL G           ++ +L TG VLAPPHYEA++LHQTPLHL+LRPS  L   +R ++V TLL  GASV  +D+N DTA+HAAARLG+A +LW +LV A  E + R   GGR   RE E  K W+  N K ETP++CL W    L  LF+MAGAW
Sbjct:   31 LVTALLSLLSRTMSAFSPRLARSFLPPLV--LLGLGTGAASLLSPS-PTSASPNVLSQEDDAVPPSLSSSP---RRRQHDQACAHLLQHLSRFKAPPSFASSPPSSSRRR-----RRGGAATTRRYLQQTLP----PSRERAGG-----REVLRAVECRDALGRSALAIAAMQGDEESVQVLIEDGYQVGAEDVHRLTPLSYAAWKGHAAVVELLLEGGADGGHFDDFGVTPLHKAAAFGHPRVVSMLLRGRGREECEGEAPLEADLPTGPVLAPPHYEAQSLHQTPLHLSLRPSPALDSAVRQELVLTLLAHGASVSAQDLNGDTALHAAARLGEAPLLWLLLVGATEEGQDR---GGRSVEREAERKKAWRITNAKGETPVECLAWWKLYLSLLFLMAGAW 410
The following BLAST results are available for this feature:
BLAST of NO11G00570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25111.14.400e-8953.10ankyrin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00570NO11G00570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00570.1NO11G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00570.1.cds1NO11G00570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00570.1 ID=NO11G00570.1|Name=NO11G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1521bp
ATGTGCTTGCCGCGCCAATTAACGGCAGGGAATGGTGGCGCCTATGTGTG
CAGATGGACTGATAAAAATTACCCATCACACACCCCAAAAGCACAGAAAA
CAAATAAAGAAGCTGCTGCTTCTCCACGTTCCCCCTTATCGGCAAAAACA
CCTCATCAACGACAACTCCAACAGAACCGCCACCAGCATCAGCACCACCA
CGCGTGCACTCCCCCGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAATTATCGTCCCTCTATGCCACTTCTCGAGTA
ATGATAAGAAAGCTGGCGACCCTCTCCCCTCTCGTCCCTTGCATTTCCTC
CTCTCCCTCCTCCTCATCTAATGCCGCTCCGAGCACTGCCTCCTCCCTCC
CCCTCCTCCTCTTCCTCCTCCTCGGCCTTGGTGGGGGCATCACCACAGCC
GTTTCTCCCTCCCTCGCTCTCTCTCCCAAACCGCCAATACCCAGCGAGGA
CGACTACAAGGACTCCTCCTCTCTCCCTCCCTCGCCCTCCCACCTTCGGC
AACTGCAGCATGACCGGGCCTGCGCTCTCCTCCTCCAGCATCTTTTCCGT
TTCTCCCTCCCTCCCTCCCTCTCTTCCTCCTCTTCCTCGTCTTCCTCCCG
TCGCTTCCACCGTGGTGCACGTGGGAACAACGCACCGATCATCCGCCAGT
ACCTGCAAAGAACTCTCCCTCTCTCCCTCCCTTCCTCCCACCAAAAAACA
GGAGGGGAAGGGGAGGGAGACAGGTCCGGAGTGCACACGAACGAGTGTCG
AGATTCCCTAGGGCGTTCGGCTTTGGCTGTGGCTGCCATGCAGGGAGACG
TGGCCAGCGTCGAGGTCTTGATGGATGGAGGGTACTGGGTCGGGGGGGAA
GATGTCCACCGACTCACCCCCCTTTCCTACGCGGCATGGAAGGGGCATGT
GAAGGTGGTGAGGGCGCTACTGCAGGGAGGGGCGGAGGGGGGACACATGG
ATGATTTTGGGGTGAGTCCTTTGCACAAAGCAGTATCATTTGGGCACCCG
GAAGTGGTGGTGGCACTGTTGGAGGGAGGGACGGACGGAGGGTCGGTGGA
TGTGAATTTGAAGACGGGTTCAGTGTTGGCACCACCGCACTATGAAGCCA
AGACGTTGCATCAGACGCCCCTCCACCTTGCCCTCCGTCCCTCCCTCACC
CTTTCTCCGGAGTTGCGGCTGCAGATTGTGGAGACGCTGTTAGGTTTTGG
TGCGAGTGTGTGTATAGAGGATGTGAATGATGATACAGCAGTTCATGCAG
CTGCTCGCCTGGGTGACGCCCGGGTGTTGTGGTCGGTTCTTGTGCATGCC
ATCGCCGAAGAGAAGAGGAGGGAAAGAGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGCGAAAAGGTATGGAAGAGGAGGAATAAGAAAGAAGAGACGCCGT
TGCAGTGTTTGCCGTGGGCGAGTTGGTGCTTGGTGCCTTTGTTTGTCATG
GCGGGGGCATGGGGGGGATAA
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protein sequence of NO11G00570.1

>NO11G00570.1-protein ID=NO11G00570.1-protein|Name=NO11G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=507bp
MCLPRQLTAGNGGAYVCRWTDKNYPSHTPKAQKTNKEAAASPRSPLSAKT
PHQRQLQQNRHQHQHHHACTPPKQQQQQQQQQQQQQQQQQLSSLYATSRV
MIRKLATLSPLVPCISSSPSSSSNAAPSTASSLPLLLFLLLGLGGGITTA
VSPSLALSPKPPIPSEDDYKDSSSLPPSPSHLRQLQHDRACALLLQHLFR
FSLPPSLSSSSSSSSSRRFHRGARGNNAPIIRQYLQRTLPLSLPSSHQKT
GGEGEGDRSGVHTNECRDSLGRSALAVAAMQGDVASVEVLMDGGYWVGGE
DVHRLTPLSYAAWKGHVKVVRALLQGGAEGGHMDDFGVSPLHKAVSFGHP
EVVVALLEGGTDGGSVDVNLKTGSVLAPPHYEAKTLHQTPLHLALRPSLT
LSPELRLQIVETLLGFGASVCIEDVNDDTAVHAAARLGDARVLWSVLVHA
IAEEKRREREGGREGGREGEKVWKRRNKKEETPLQCLPWASWCLVPLFVM
AGAWGG*
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mRNA from alignment at chr11:246549..248069+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00570.1 ID=NO11G00570.1|Name=NO11G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1521bp|location=Sequence derived from alignment at chr11:246549..248069+ (Nannochloropsis oceanica)
ATGTGCTTGCCGCGCCAATTAACGGCAGGGAATGGTGGCGCCTATGTGTG
CAGATGGACTGATAAAAATTACCCATCACACACCCCAAAAGCACAGAAAA
CAAATAAAGAAGCTGCTGCTTCTCCACGTTCCCCCTTATCGGCAAAAACA
CCTCATCAACGACAACTCCAACAGAACCGCCACCAGCATCAGCACCACCA
CGCGTGCACTCCCCCGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAATTATCGTCCCTCTATGCCACTTCTCGAGTA
ATGATAAGAAAGCTGGCGACCCTCTCCCCTCTCGTCCCTTGCATTTCCTC
CTCTCCCTCCTCCTCATCTAATGCCGCTCCGAGCACTGCCTCCTCCCTCC
CCCTCCTCCTCTTCCTCCTCCTCGGCCTTGGTGGGGGCATCACCACAGCC
GTTTCTCCCTCCCTCGCTCTCTCTCCCAAACCGCCAATACCCAGCGAGGA
CGACTACAAGGACTCCTCCTCTCTCCCTCCCTCGCCCTCCCACCTTCGGC
AACTGCAGCATGACCGGGCCTGCGCTCTCCTCCTCCAGCATCTTTTCCGT
TTCTCCCTCCCTCCCTCCCTCTCTTCCTCCTCTTCCTCGTCTTCCTCCCG
TCGCTTCCACCGTGGTGCACGTGGGAACAACGCACCGATCATCCGCCAGT
ACCTGCAAAGAACTCTCCCTCTCTCCCTCCCTTCCTCCCACCAAAAAACA
GGAGGGGAAGGGGAGGGAGACAGGTCCGGAGTGCACACGAACGAGTGTCG
AGATTCCCTAGGGCGTTCGGCTTTGGCTGTGGCTGCCATGCAGGGAGACG
TGGCCAGCGTCGAGGTCTTGATGGATGGAGGGTACTGGGTCGGGGGGGAA
GATGTCCACCGACTCACCCCCCTTTCCTACGCGGCATGGAAGGGGCATGT
GAAGGTGGTGAGGGCGCTACTGCAGGGAGGGGCGGAGGGGGGACACATGG
ATGATTTTGGGGTGAGTCCTTTGCACAAAGCAGTATCATTTGGGCACCCG
GAAGTGGTGGTGGCACTGTTGGAGGGAGGGACGGACGGAGGGTCGGTGGA
TGTGAATTTGAAGACGGGTTCAGTGTTGGCACCACCGCACTATGAAGCCA
AGACGTTGCATCAGACGCCCCTCCACCTTGCCCTCCGTCCCTCCCTCACC
CTTTCTCCGGAGTTGCGGCTGCAGATTGTGGAGACGCTGTTAGGTTTTGG
TGCGAGTGTGTGTATAGAGGATGTGAATGATGATACAGCAGTTCATGCAG
CTGCTCGCCTGGGTGACGCCCGGGTGTTGTGGTCGGTTCTTGTGCATGCC
ATCGCCGAAGAGAAGAGGAGGGAAAGAGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGCGAAAAGGTATGGAAGAGGAGGAATAAGAAAGAAGAGACGCCGT
TGCAGTGTTTGCCGTGGGCGAGTTGGTGCTTGGTGCCTTTGTTTGTCATG
GCGGGGGCATGGGGGGGATAA
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Coding sequence (CDS) from alignment at chr11:246549..248069+

>NO11G00570.1 ID=NO11G00570.1|Name=NO11G00570.1|organism=Nannochloropsis oceanica|type=CDS|length=1521bp|location=Sequence derived from alignment at chr11:246549..248069+ (Nannochloropsis oceanica)
ATGTGCTTGCCGCGCCAATTAACGGCAGGGAATGGTGGCGCCTATGTGTG
CAGATGGACTGATAAAAATTACCCATCACACACCCCAAAAGCACAGAAAA
CAAATAAAGAAGCTGCTGCTTCTCCACGTTCCCCCTTATCGGCAAAAACA
CCTCATCAACGACAACTCCAACAGAACCGCCACCAGCATCAGCACCACCA
CGCGTGCACTCCCCCGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAATTATCGTCCCTCTATGCCACTTCTCGAGTA
ATGATAAGAAAGCTGGCGACCCTCTCCCCTCTCGTCCCTTGCATTTCCTC
CTCTCCCTCCTCCTCATCTAATGCCGCTCCGAGCACTGCCTCCTCCCTCC
CCCTCCTCCTCTTCCTCCTCCTCGGCCTTGGTGGGGGCATCACCACAGCC
GTTTCTCCCTCCCTCGCTCTCTCTCCCAAACCGCCAATACCCAGCGAGGA
CGACTACAAGGACTCCTCCTCTCTCCCTCCCTCGCCCTCCCACCTTCGGC
AACTGCAGCATGACCGGGCCTGCGCTCTCCTCCTCCAGCATCTTTTCCGT
TTCTCCCTCCCTCCCTCCCTCTCTTCCTCCTCTTCCTCGTCTTCCTCCCG
TCGCTTCCACCGTGGTGCACGTGGGAACAACGCACCGATCATCCGCCAGT
ACCTGCAAAGAACTCTCCCTCTCTCCCTCCCTTCCTCCCACCAAAAAACA
GGAGGGGAAGGGGAGGGAGACAGGTCCGGAGTGCACACGAACGAGTGTCG
AGATTCCCTAGGGCGTTCGGCTTTGGCTGTGGCTGCCATGCAGGGAGACG
TGGCCAGCGTCGAGGTCTTGATGGATGGAGGGTACTGGGTCGGGGGGGAA
GATGTCCACCGACTCACCCCCCTTTCCTACGCGGCATGGAAGGGGCATGT
GAAGGTGGTGAGGGCGCTACTGCAGGGAGGGGCGGAGGGGGGACACATGG
ATGATTTTGGGGTGAGTCCTTTGCACAAAGCAGTATCATTTGGGCACCCG
GAAGTGGTGGTGGCACTGTTGGAGGGAGGGACGGACGGAGGGTCGGTGGA
TGTGAATTTGAAGACGGGTTCAGTGTTGGCACCACCGCACTATGAAGCCA
AGACGTTGCATCAGACGCCCCTCCACCTTGCCCTCCGTCCCTCCCTCACC
CTTTCTCCGGAGTTGCGGCTGCAGATTGTGGAGACGCTGTTAGGTTTTGG
TGCGAGTGTGTGTATAGAGGATGTGAATGATGATACAGCAGTTCATGCAG
CTGCTCGCCTGGGTGACGCCCGGGTGTTGTGGTCGGTTCTTGTGCATGCC
ATCGCCGAAGAGAAGAGGAGGGAAAGAGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGCGAAAAGGTATGGAAGAGGAGGAATAAGAAAGAAGAGACGCCGT
TGCAGTGTTTGCCGTGGGCGAGTTGGTGCTTGGTGCCTTTGTTTGTCATG
GCGGGGGCATGGGGGGGATAA
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Synonyms
Publications