NO11G00360, NO11G00360 (gene) Nannochloropsis oceanica

Overview
NameNO11G00360
Unique NameNO11G00360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1068
Alignment locationchr11:158619..159686 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:158619..159686 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025986RPAP3-like_C
Homology
The following BLAST results are available for this feature:
BLAST of NO11G00360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL110nonsL110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR067ncniR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR018ngnoR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007472NSK007472Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO11G00360.1NO11G00360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674571gene_10265Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO11G00360.1NO11G00360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO11G00360 ID=NO11G00360|Name=NO11G00360|organism=Nannochloropsis oceanica|type=gene|length=1068bp
CAGGCCCATTTTCACTTTTCACCCCTTTGTCCATACGTTCAGTCATTTGA
GCCACGCATTGAACAATACACAGgtagcttggcttggcagtagtgtattt
aggttccagatcccctcccaaagtaatgtcgctttgtttttcaggctcat
tttccccgaatcctcctttcctccccttcccctcacaagCACCAAGCCCT
GGACGAAGACCAGCGACTCACACGCGTGGACGTCGTAAAAAAACGCGCCG
TGCGCACGGTTGGAAGCTATGAGGAATTCAAGAATTTGGTGGCTTGTGCC
CACCTTAGACCGCTTACCCGCAAGGACATTCAGAATGTTGCCCAGCGCAC
GCAAGTATGGACTACGACGAGCAGTAGGGCGGCTGGGATGATCAACGTAA
AAAGAAATGAAAGGAACGGAAGGAACAGTAATGCTCTATATGAGCTGCAA
GATGAATATGACAGAAAGAATGCGGCGACGACAATGCATGGAAATCAAAA
CTCCTCCTCTTCAATCCCCTCATCCTCATCCGCTACCGCTACTACCCCCC
TGACCTTTGAGCGTGAATGGCAGCAGCTGGCCAAAGCCGGCAAGACAAAC
CACGAAAAATTATCACTTCTTTCTGCTGGTGGAGCGTCATCTCTGAACCG
GTGCTATGTCATGGGGAAGGAGAAAAGAGAGATGAATGCTGATGTGTTTG
GTGATGTGGTCGTAGTGCTGTGGGAGGCATTGCAAGAAGAGGAAGGCAGT
GGGGGTGGAAGTCGGAAAATGGAGGAATACGATGGTCATGAAGGAAGGGA
AGAGAAAACAGGTGTTGATTTAATCACGGATGTCTTGGAGGTATTGCACG
TTCTGACTAAGATTGATAGGATCCAGATCACCCTTGCGCTGCTGAGCAAG
TCTCAGCGGGAGGCGATGAGTGCATTACTGGGAAGACTGGAGAGAGAGAA
AAGGGAGGGAAAGGATGAGAGAAGGCAGCGCATGGAGGAGGTGCAGCGTG
CGTTTTCATTTTTGGCCCGTGGTGGAGGGAGAAAGCTAGAGGAGGCACGT
GATACCGTTACGTTATAA
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protein sequence of NO11G00360.1

>NO11G00360.1-protein ID=NO11G00360.1-protein|Name=NO11G00360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MINVKRNERNGRNSNALYELQDEYDRKNAATTMHGNQNSSSSIPSSSSAT
ATTPLTFEREWQQLAKAGKTNHEKLSLLSAGGASSLNRCYVMGKEKREMN
ADVFGDVVVVLWEALQEEEGSGGGSRKMEEYDGHEGREEKTGVDLITDVL
EVLHVLTKIDRIQITLALLSKSQREAMSALLGRLEREKREGKDERRQRME
EVQRAFSFLARGGGRKLEEARDTVTL*
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Synonyms
Publications