NO10G03980, NO10G03980 (gene) Nannochloropsis oceanica

Overview
NameNO10G03980
Unique NameNO10G03980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2704
Alignment locationchr10:1183264..1185967 +

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin repeat-containing domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:1183264..1185967 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Homology
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BLAST of NO10G03980 vs. NCBI_GenBank
Match: EWM25603.1 (Ankyrin repeat-containing domain protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 208.8 bits (530), Expect = 6.700e-50
Identity = 117/247 (47.37%), Postives = 153/247 (61.94%), Query Frame = 0 
Query:  601 GWSVIHHAAWQGKTSLLFSLLSSTSPFAFLQ----RGPGGVTPLMLAAKGGHVEAVKLLVGIEEVRRVGRARDEKGRHALLDAWEGRNEGVVLPLLQCFGEEVGGR------------EGEAEAPSAAFLPLPTLNDLHWQTGRSLLHEAVKEEWKKVLKALLIMASATEGKGGTVDVNVRSGGWGV-GWGRGRTPMQLAVWRQDEEIGRMLWAREEVREEHRWDWMVRGWVWWRGVGGKGGREEGR 831
            GWS  H AA +G  S L SLL S  P          GPGGV PLML+ + GHV  VK+L+ +   +   RARDE GRHALL+AWE R+  ++  L+ CF EE GG+            E E +      LP P+LNDLHW++G+ L+H+AV+E W++VLK L+ M    +G    VD+N+RSGG GV GW  G TPMQ+A  + D+E GR+LW  E VRE+HR D MVR WVWWR +GG+  R++ R
Sbjct:   14 GWSATHTAAEKGDVSSLRSLLQSLPPXXXXXLVTGPGPGGVRPLMLSVRTGHVGVVKILLQLG--KEACRARDEVGRHALLEAWERRDVEMIRVLISCFQEERGGKSWGKDEEDEGREEREGDRRGEKTLPAPSLNDLHWRSGQGLIHDAVREGWREVLKELIAM--GRKGSKNIVDINLRSGGMGVTGW--GWTPMQMAAMKDDKEGGRLLWREEAVREKHRCDLMVRSWVWWRKIGGEEERKKTR 254
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BLAST of NO10G03980 vs. NCBI_GenBank
Match: EWM25602.1 (hypothetical protein Naga_100936g2 [Nannochloropsis gaditana])

HSP 1 Score: 121.3 bits (303), Expect = 1.400e-23
Identity = 68/193 (35.23%), Postives = 100/193 (51.81%), Query Frame = 0 
Query:   11 THPNNTKAPSRRLILKTLAFLVLAAGTSVGGLLLLIDSINRGFISHPVPDVLKPSALSEVGIFSRQLYHTCTTHLRLLLDTFITSPIHKTLSSLGDLLLEIQLWLLRVDGEHAEGVWALTASMLHYVERGPGEGXXXXXXXXXRHLDMAAELLTTTQVHYMRHAPDWLHELLHLGLKVVCAFVAVAALRWGHR 204
            +H +    PSR   L+  + L+L +G  +G  LLL+D I RG  S P P +   + LS+VG   RQ   T TT L  LLDT +   +H ++S L D+L ++  WL+R+D    E +WA T SMLHY +R                +    + + TT + Y    P WL E   L L+V+  F+ + A+RWGH+
Sbjct:    7 SHLSVPPRPSRP-FLQVFSILILGSGVCLGSALLLLDQIQRGLPS-PYPAIFTNTTLSDVGRVLRQHDSTSTTQLVSLLDTRVIPLLHSSVSWLSDILTQLHYWLIRMDRGEMENMWAFTTSMLHYDKRWEESSDDKGGAGGYGKMMEVGQFMRTTHMQYKNQVPLWLDEAFWLALRVLAVFLVIGAMRWGHQ 197
The following BLAST results are available for this feature:
BLAST of NO10G03980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM25603.16.700e-5047.37Ankyrin repeat-containing domain protein, partial ... [more]
EWM25602.11.400e-2335.23hypothetical protein Naga_100936g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR004ncniR004Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR016ngnoR016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO10G03980.1NO10G03980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100701g1gene4906Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO10G03980.1NO10G03980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO10G03980 ID=NO10G03980|Name=NO10G03980|organism=Nannochloropsis oceanica|type=gene|length=2704bp
ACAGACATGCTGCTCCCACAACCGCAACCCCCACCAACACACCCGAACAA
CACAAAAGCCCCGTCACGGCGTCTTATCCTCAAGACGTTGGCTTTCCTCG
TTCTCGCTGCTGGCACAAGCGTCGGTGGGCTCTTGCTCCTGATTGACAGC
ATCAACCGCGGCTTCATCTCCCACCCTGTCCCAGATGTCTTGAAACCATC
CGCATTAAGCGAAGTCGGGATCTTTTCCCGCCAGCTCTACCACACGTGCA
CTACGCATCTCCGCCTCCTCCTTGACACCTTCATCACATCGCCCATCCAT
AAAACGCTCTCCTCGCTCGGCGACCTGCTCCTAGAAATCCAGCTATGGTT
ATTGCGGGTCGATGGCGAGCATGCTGAGGGTGTGTGGGCCTTGACTGCCT
CTATGCTTCACTACGTGGAACGAGGCCCAGGGGAAGGAGGAGGAAAGGAG
GGAGGAGGGGGGGGGCGGCACTTGGACATGGCGGCGGAGCTCTTGACCAC
AACCCAGGTACATTACATGCGCCATGCTCCAGACTGGCTGCACGAGTTGC
TTCACTTGGGTTTGAAAGTGGTGTGTGCTTTTGTGGCCGTGGCGGCGTTG
CGGTGGGGGCATCGAGAACATGAGGAGGACGAGGAGGCGGAAGGGGCTGA
AGAAGAGGCAGAGCAGAGCAATGATGCAGCAGCTATTGACGCTATATCTT
CCCCTCTTCCTTCTTCGCCTCTTTGCCCCATTTTTCCCACTTCCACCTCT
GCTACCACCTGTCTTTCCACTGAAGCTCCCCTCCCTCCTCCTTCCCACCC
CTCCCACTCCTCCCTCCGTCCTCCTCATCATCACCTCCATAATACTCGCC
GCCTATGCGAAAAATTTACGACGGCCTTCTTGCTCACCTTCGGCTTTGCT
CTAGGCGTGGGCATCCTTGCCATGGACATTGCACAGCGTGACACGGAGCA
AGATTTTCTCTCCTCCCCGCTCACGGTAGATGTACTCGAAGGGAAGGAGG
TAGGCAGGGAGGGAGAATCCTCTTCAGCTTCATCCTTCTTGTCTTTTTTC
AAGGTGCAGGAAGGAAGAAATATAGAGTCGTTGTCCTTCTCATCATTCTA
CAGGGTGGAGGAAGGGAGGGAAGGGGGGAGAGAAGAAGGCTACTCCTTGA
CTTCTTATCGTAAGGTCGCTACGAGAGGGGAGGGCGAGAGGGAGGGAGGG
CTGCCAGAGTCTCAGCTGCCGCCTGCGGAGAAGGGGTGGGTCTCGTCCTT
AAGTGCGTGGAGGAGAACCACGCCCCGGGCAGTCGCGATGACGGTGAATG
AGTCAGATAAGGAGGGAGAGAGAGACGAAGGGAAGGATGGAGGAAAGGAA
GAGGAGATGCGTTTTGAGGAAGAAGAGGAGGAGGTGACTGATGATGAGGG
AGGGGAGCAAATTTTCAATGACAAGGATGATCTGTGGCCAAGAGGGTGCA
AAGAGGACGAGGGATGGCGGGAAACGTGGGAAGAAGGGCAGTGGGTGGAG
GATGAGGAGGAGGATAAAGAGGACAAGGAGGAGGAGGACGACGACGAGGA
GGAGGACGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGACAAGGAGA
AAGAAGAAGAACAGGAGGACAAGGAGAAAGAAGAAGAAGAGGAGTTGCCG
CTTCAAAGCGAGGTGGACGAGGAGGATCAGGGACGGAAGGGGGGGGCTCT
TCACTACCACCGACAAGACCTACTACGACCTCAAGAAGGGGACGGACAAC
GTCCCCCCCTCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCTGAC
GCCCAAGGCTGGTCTGTCATCCACCACGCTGCTTGGCAAGGCAAGACCTC
CCTCCTCTTTTCCCTCCTCTCCTCCACCTCCCCCTTCGCCTTCCTCCAAC
GTGGACCCGGGGGCGTCACGCCTCTGATGCTGGCCGCAAAAGGAGGACAT
GTAGAGGCAGTCAAACTCCTTGTGGGTATCGAAGAGGTGCGAAGAGTGGG
AAGGGCGAGGGATGAGAAGGGAAGGCATGCCTTGCTAGACGCGTGGGAGG
GGAGAAATGAGGGGGTGGTATTGCCGTTGTTACAGTGTTTTGGGGAGGAG
GTGGGAGGGAGGGAGGGAGAGGCAGAGGCTCCTAGTGCTGCATTTCTTCC
GTTACCGACTTTGAATGACTTGCATTGGCAAACGGGACGGTCTTTATTGC
ATGAGGCAGTAAAGGAGGAATGGAAAAAGGTCTTAAAGGCGCTGCTGATC
ATGGCATCAGCAACGGAAGGGAAAGGCGGAACAGTAGATGTAAATGTGAG
GAGTGGAGGCTGGGGAGTAGGGTGGGGAAGAGGGAGGACCCCTATGCAAT
TGGCAGTATGGAGGCAGGACGAAGAGATTGGGCGGATGCTGTGGGCAAGG
GAGGAAGTGAGAGAGGAGCATCGGTGGGACTGGATGGTGAGGGGGTGGGT
TTGGTGGAGGGGGGTTGGGGGGAAGGGAGGGAGGGAGGAAGGGAGGGAGA
GGGATTGAAAATGGGTCGTACGAGTTGAAGAAAGGTAGGTAGGTGTATGT
ATGTGTGGTTGTAGACGCGAAGTGTAAATGATTTCCTGAGAGCTTGAAGG
CACCCGAGGTGAAGGAAGGGTGTGGCTGTGGAGGAGTCAGGGAGGAAGGA
AAGCGAGAAAGCGAGAAAGCGAGAAAGAAGGAAGGCTGCTGGTTGTATTT
AGTC
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protein sequence of NO10G03980.1

>NO10G03980.1-protein ID=NO10G03980.1-protein|Name=NO10G03980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=834bp
MLLPQPQPPPTHPNNTKAPSRRLILKTLAFLVLAAGTSVGGLLLLIDSIN
RGFISHPVPDVLKPSALSEVGIFSRQLYHTCTTHLRLLLDTFITSPIHKT
LSSLGDLLLEIQLWLLRVDGEHAEGVWALTASMLHYVERGPGEGGGKEGG
GGGRHLDMAAELLTTTQVHYMRHAPDWLHELLHLGLKVVCAFVAVAALRW
GHREHEEDEEAEGAEEEAEQSNDAAAIDAISSPLPSSPLCPIFPTSTSAT
TCLSTEAPLPPPSHPSHSSLRPPHHHLHNTRRLCEKFTTAFLLTFGFALG
VGILAMDIAQRDTEQDFLSSPLTVDVLEGKEVGREGESSSASSFLSFFKV
QEGRNIESLSFSSFYRVEEGREGGREEGYSLTSYRKVATRGEGEREGGLP
ESQLPPAEKGWVSSLSAWRRTTPRAVAMTVNESDKEGERDEGKDGGKEEE
MRFEEEEEEVTDDEGGEQIFNDKDDLWPRGCKEDEGWRETWEEGQWVEDE
EEDKEDKEEEDDDEEEDEEEEEEEEEEEDKEKEEEQEDKEKEEEEELPLQ
SEVDEEDQGRKGGALHYHRQDLLRPQEGDGQRPPLALPPSLPPSLLPDAQ
GWSVIHHAAWQGKTSLLFSLLSSTSPFAFLQRGPGGVTPLMLAAKGGHVE
AVKLLVGIEEVRRVGRARDEKGRHALLDAWEGRNEGVVLPLLQCFGEEVG
GREGEAEAPSAAFLPLPTLNDLHWQTGRSLLHEAVKEEWKKVLKALLIMA
SATEGKGGTVDVNVRSGGWGVGWGRGRTPMQLAVWRQDEEIGRMLWAREE
VREEHRWDWMVRGWVWWRGVGGKGGREEGRERD*
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Synonyms
Publications